rna6730, rna6730 (mRNA) Nannochloropsis gaditana

Overview
Namerna6730
Unique Namerna6730
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1648
Alignment locationCM002469.1:361570..363540 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100027g37.157.mrna
Orig protein idgnl|cribi|Naga_100027g37.157
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:361570..363540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g37gene6507Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23979.1cds6714Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6730rna6730-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6730 ID=rna6730|Name=rna6730|organism=Nannochloropsis gaditana|type=mRNA|length=1648bp
TTTAGATATTAGCCATGTCATCCACTCAGGTGATTTGATATAAAAATGCC
TCAGCCGCAAGATGAACATCACGCGCGAAGAAGGGGAGGGGAGAAGCTGT
CGTATGTCCTCCTCTTCATTCTTCTCTTCTTGTTACCAGCTCGTAGCTTC
CAGCACGGATTTCATTATCAGGACCTAGTTATCGCCTTTCGTCATCCCAG
TCGTAACACCAAGGGTTTTTGCACGGGTGTCGAGAAGAACTACGTGCTGC
CGCAATTTGAATTTCTGGCGGCCTTAAATACCTCACAGTGCAGTACATTT
GCAAAAAGCTTAGCACTTAGACCATTTTTCCACTCTTCGACAATACCATT
TTACAGCATTCGGTATGGAGATGATATTGTAGGTCCGTATTTCACAAAAG
ACCTCGCGGACGTGTCGCGACGTTGCATTTTGACATACGGTCTCTTTCAT
CTCTTGGCAGCTGGCAAGAACCCCAGCGACACTGCTGCCTCCGCCTGCAA
GGCGAGCAACAGCAAAGGATACAATCACAAGAAAGGAATGTTTTCGACCA
CGATCCCCAAATATTCTTTATCAACAAAGTTGGGGAAAAGATGGCGCGTG
GGGGTAGTAGGAGTTTCGGATCAGAACGAGGAAATTCTGTTGTCCTCTCG
TCAGAAAGAAAATGCTGTGAATGCATTTCAACCTTTTTTGCACGGCACCG
CTGGTCTTGATCCCACTTTACGACAATTAGACGAGAGAGGGCCTCCTCCT
GAGCTCGACTTCTTCATTTTCATTTTCCCAAAATGTGGTCAGGTGCTTTT
GTGCCTCCGCTTGGCTCAGGGCCCCGGTACGGGCAAGGGCTACACGTTTG
CCTCAAAGCCTCGACGGCCCCGTAGTGGAGTATTAAAAGCACTGGCCGCT
TACAGAGAAAAGGCTACCTTCATTTCGCCTACAGCCATGGATCCCGAGCT
TGCGTGGGTAATGAATAACATGGGTGGGGTGAGGAAAAGAAGCAGAGTGT
TTGACCCGTTCATGGGCTCGGGAAGTTTGCTCTTTACTGCGAGCCTGTTA
GGCGCCGAAGAGTTGTTTGGAAGCGATGCTGCACAAGAGCTCATGGGAGG
CGAAAGCCGTGTGAACAAGCAACTAATAATCAAGTCATTTGCATACGATA
AAAACGATTTCTCCCAGTGGGTAGACTCCTTGACGTCCCCAGTACCTGTT
CTTACTCAGGCAGACATACTTTCCCGTCAGCTTCATCCCCTGTTCCGCTC
CGGTTACTACGACAGCATTGTGACCGATCCGCCCTACAATATCAAGGCTA
AGGTGTTTGGAAAAGCAGAAACTGCGACAGATACGAAGGCAGCCACAGCT
CGTCAGCAGACTATCATACCTGTGATTTTCGCCCTAATTGATATTGCTGC
CAGTGTGCTGGTCCCAGGCGGGCGCCTCGTCTTTTTTTTGCCTGAATGGA
CCAAGCAGGATATTGGATGCAACAAGAAATCTGATGCCAATATACTCTCT
TACATGCTCTCGAGGACGCCCAAGGCTTTTAAAGTCGTCTTCACACTTCC
CCAAACCTTTTCTCCTTCATTTACTCGCTGGCTTGTATGTCTTGAAAAAT
CTGTAAACGAATAAAGTCTTAACAGCTAACAACCAATTATAATGAATA
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protein sequence of rna6730

>rna6730-protein ID=rna6730-protein|Name=rna6730|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MSRIICLGLLLALWSTRNRLSTAAVASTSTPTWPQKGQRNSMANQAQEPS
VTPSRWDLNAFHAFVKGRTGGICSAPVSLPTTNVYWVLHGQLSNPFTGDV
IAEVRGIEVVRFVGYVQAPGQQRGNICGSHPAVDLPKSQSHAMPGTRMCL
QLKDSQPKVTETGEEKRHVDIQTASLQRWCALATSVSAKTFRYFEPCTGR
PLLRFRPGPRAKVRTVPAAITTKQVITYALSHSGSLHLVAESLNGGLVAV
KNEAAGPVLVSQKRKCILCFPPKPPKKFELSLLMWPGSKRGNRDYSRNEG
KASEERKVDGSRRRFPWRSLVQFGTSSAQPACRELYTLTTEPLPKQRGRR
PRIKYLRYGEAPHWCGAGRVCHLALDGTRFDRLQDVPKRYRELFFPTTTT
APLTDESEKKVSAELPPQSVEAFLEEARGVQRAERARFPFCRFVREFG
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mRNA from alignment at CM002469.1:361570..363540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6730 ID=rna6730|Name=rna6730|organism=Nannochloropsis gaditana|type=mRNA|length=1971bp|location=Sequence derived from alignment at CM002469.1:361570..363540- (Nannochloropsis gaditana)
GGAAAAAGGATCTGACATGTCAAGAATAATTTGCCTGGGCTTGCTTTTAG
CCCTGTGGTCGACAAGAAACCGACTCTCAACGGCCGCGGTTGCCAGCACC
TCAACTCCCACATGGCCTCAAAAAGGGCAACGAAACAGTATGGCAAATCA
AGCCCAAGAACCGTCCGTTACTCCGAGCCGATGGGATTTGAATGCCTTTC
ATGCCTTTGTCAAGGGTCGGACGGGGGGAATTTGTTCGGCGCCAGTGTCT
CTGCCTACAACAAACGTCTATTGGGTACTGCATGGCCAGCTCTCTAATCC
CTTTACAGGGGACGTCATAGCCGAAGTACGAGGTATAGAAGTCGTGCGAT
TTGTGGGCTATGTGCAGGCACCAGGGCAACAAAGAGGGAACATATGTGGA
TCCCATCCTGCCGTAGATCTGCCCAAATCACAAAGTCATGCCATGCCCGG
TACGCGGATGTGCTTGCAATTGAAGGATTCTCAGCCTAAAGTGACGGAGA
CAGGCGAGGAAAAGCGGCACGTTGATATACAAACTGCATCGCTTCAGCGG
TGGTGCGCATTGGCCACCTCAGTATCTGCCAAAACGTTCCGATACTTTGA
GCCTTGCACAGGGCGACCCTTGTTGAGATTTCGACCAGGTCCTCGCGCCA
AAGTTCGAACAGTCCCAGCCGCCATCACAACCAAGCAAGTCATCACATAT
GCCTTGTCACATTCCGGTAGCTTACACTTGGTGGCAGAATCCCTCAATGG
TGGTCTTGTGGCGGTGAAAAATGAAGCTGCCGGGCCAGTGCTAGTGTCAC
AGAAAAGAAAATGTATCTTATGCTTTCCGCCTAAGCCACCAAAGAAATTT
GAACTATCTTTACTCATGTGGCCAGGCTCCAAAAGAGGCAATCGTGATTA
TAGCAGGAATGAAGGCAAAGCTTCAGAAGAGAGAAAGGTGGATGGCAGTA
GACGGAGATTCCCGTGGAGGTCCCTCGTGCAGTTCGGCACTTCTTCTGCG
CAGCCAGCTTGCCGTGAGCTCTACACTCTGACCACGGAGCCGCTGCCCAA
GCAGCGTGGCCGTCGTCCACGGATAAAATATCTTCGTTATGGAGAGGCTC
CTCACTGGTGTGGGGCAGGGAGGGTCTGCCACCTTGCCCTCGACGGCACT
AGGTTCGACCGATTGCAGGATGTTCCCAAGCGTTACAGAGAGCTCTTCTT
TCCCACGACGACAACTGCGCCCTTAACCGACGAAAGCGAGAAGAAAGTAT
CAGCAGAGCTGCCTCCGCAGTCCGTTGAGGCCTTCTTGGAGGAAGCCAGA
GGAGTCCAACGGGCAGAACGCGCTCGGTTTCCCTTTTGCAGGTTCGTCCG
GGAGTTTGGATGACGCCGTTGAGACCGTCAGCCAAAGTGCAATAGCTAGA
GTTTCGAATGAGAAAGCAAGTAATTTTTACAGACTGAACACGCGTTAAAC
GAGCATATTCATTATAATTGGTTGTTAGCTGTTAAGACTTTATTCGTTTA
CAGATTTTTCAAGACATACAAGCCAGCGAGTAAATGAAGGAGAAAAGGTT
TGGGGAAGTGTGAAGACGACTTTAAAAGCCTTGGGCGTCCTCGAGAGCAT
GTAAGAGAGTATATTGGCATCAGATTTCTTGTTGCATCCAATATCCTGCT
TGGTCCATTCAGGCAAAAAAAAGACGAGGCGCCCGCCTGGGACCAGCACA
CTGGCAGCAATATCAATTAGGGCGAAAATCACAGGTATGATAGTCTGCTG
ACGAGCTGTGGCTGCCTTCGTATCTGTCGCAGTTTCTGCTTTTCCAAACA
CCTTAGCCTTGATATTGTAGGGCGGATCGGTCACAATGCTGTCGTAGTAA
CCGGAGCGGAACAGGGGATGAAGCTGACGGGAAAGTATGTCTGCCTGAGT
AAGAACAGGTACTGGGGACGTCAAGGAGTCTACCCACTGGGAGAAATCGT
TTTTATCGTATGCAAATGACT
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Coding sequence (CDS) from alignment at CM002469.1:361570..363540-

>rna6730 ID=rna6730|Name=rna6730|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002469.1:361570..363540- (Nannochloropsis gaditana)
ATGTCAAGAATAATTTGCCTGGGCTTGCTTTTAGCCCTGTGGTCGACAAG
AAACCGACTCTCAACGGCCGCGGTTGCCAGCACCTCAACTCCCACATGGC
CTCAAAAAGGGCAACGAAACAGTATGGCAAATCAAGCCCAAGAACCGTCC
GTTACTCCGAGCCGATGGGATTTGAATGCCTTTCATGCCTTTGTCAAGGG
TCGGACGGGGGGAATTTGTTCGGCGCCAGTGTCTCTGCCTACAACAAACG
TCTATTGGGTACTGCATGGCCAGCTCTCTAATCCCTTTACAGGGGACGTC
ATAGCCGAAGTACGAGGTATAGAAGTCGTGCGATTTGTGGGCTATGTGCA
GGCACCAGGGCAACAAAGAGGGAACATATGTGGATCCCATCCTGCCGTAG
ATCTGCCCAAATCACAAAGTCATGCCATGCCCGGTACGCGGATGTGCTTG
CAATTGAAGGATTCTCAGCCTAAAGTGACGGAGACAGGCGAGGAAAAGCG
GCACGTTGATATACAAACTGCATCGCTTCAGCGGTGGTGCGCATTGGCCA
CCTCAGTATCTGCCAAAACGTTCCGATACTTTGAGCCTTGCACAGGGCGA
CCCTTGTTGAGATTTCGACCAGGTCCTCGCGCCAAAGTTCGAACAGTCCC
AGCCGCCATCACAACCAAGCAAGTCATCACATATGCCTTGTCACATTCCG
GTAGCTTACACTTGGTGGCAGAATCCCTCAATGGTGGTCTTGTGGCGGTG
AAAAATGAAGCTGCCGGGCCAGTGCTAGTGTCACAGAAAAGAAAATGTAT
CTTATGCTTTCCGCCTAAGCCACCAAAGAAATTTGAACTATCTTTACTCA
TGTGGCCAGGCTCCAAAAGAGGCAATCGTGATTATAGCAGGAATGAAGGC
AAAGCTTCAGAAGAGAGAAAGGTGGATGGCAGTAGACGGAGATTCCCGTG
GAGGTCCCTCGTGCAGTTCGGCACTTCTTCTGCGCAGCCAGCTTGCCGTG
AGCTCTACACTCTGACCACGGAGCCGCTGCCCAAGCAGCGTGGCCGTCGT
CCACGGATAAAATATCTTCGTTATGGAGAGGCTCCTCACTGGTGTGGGGC
AGGGAGGGTCTGCCACCTTGCCCTCGACGGCACTAGGTTCGACCGATTGC
AGGATGTTCCCAAGCGTTACAGAGAGCTCTTCTTTCCCACGACGACAACT
GCGCCCTTAACCGACGAAAGCGAGAAGAAAGTATCAGCAGAGCTGCCTCC
GCAGTCCGTTGAGGCCTTCTTGGAGGAAGCCAGAGGAGTCCAACGGGCAG
AACGCGCTCGGTTTCCCTTTTGCAGGTTCGTCCGGGAGTTTGGATGA
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Synonyms
Publications