rna6726, rna6726 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6726
Unique Name	rna6726
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1804
Alignment location	CM002469.1:353878..356892 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100027g33.120.mrna
Orig protein id	gnl\|cribi\|Naga_100027g33.120
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002469.1	supercontig	CM002469.1:353878..356892 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100027g33	gene6503	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23942.1	cds6710	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6726	rna6726-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002469.1:353878..356892-
coding sequence from alignment at CM002469.1:353878..356892-

mRNA sequence

>rna6726 ID=rna6726|Name=rna6726|organism=Nannochloropsis gaditana|type=mRNA|length=1804bp
CAGTCTTCCATGTGGCATGTAGGGAGTCCCCAATCTGGCTAACCCTCTTT
CCGTCCTCGATCGCTCATCACCCAGCAGACAAAGCAGCAAAAAAAGGTTT
CCGAGAAAGCGTAGAACAACCTTCATGCATGCGTTGGCTTGTTATTTTTC
CTTTCTTCCTCATTTTGCCCGCAGCAACTATCGTTCTAGACATGGACAAC
CCGCGCCTATCAGACGCAACTCTATGCATGGCCTCACCTGCCCAGTGTTC
AACCTTTTCTCCCGGCCCTCGAAGATAACCAGACAGGTCGAGGTTTTTGG
TGCAACATCGCGTTGTATCACTTTCTGGACGAAACACCTGAAGTTGACGG
CGCGATGACAGCAGCGGCTGGCCAGCAATCAGATGCTTTTTTCGAACCAA
GCAACGTGACACACAATACAACGCCAATCGTCTTAGAGGCCACCAATCGC
ATCCGCGAATTTGCGGCCGGCTATTTGGAGCAAAATCGTGCCATCGTATT
GGTCACCTCCGGAGGCACCGCTGCGCCTTTGGAGCGCAATACTGTGCGAT
CCATAGAAAATTTCAGCACAGGCAAGCGCGGGGCGGCTTCGGCGGAATAC
TTCCTGCGACTGGGCTATGCAGTCATTTTTTTGCATCGTCCAGGGACATC
TTGTCCTTTCTCCAGGACGTTCCAGACGGAGGTCGCGGAGCACGTAGACG
GAGCTCTGATGGATGCCTTGCGCGTGAGAGAGAAAACCGGGGCCTTGGTT
CTGAACGCCAAAGGAGGAGCGGCCGCCTCCTTGTGCGCGGCGCTTGAGGC
GTATCAAGAGGCGCGAGAGGAGGGTACGCTGCTGCAGGTTTCTTACGAGA
CAGTGACAGACTATCTTCTCATCCTACAATCTGCCGCTCGCTGCCTTGCT
CCCTTTAGACAGAATGCCCTGTTCTTTTTGGCCTGTGCGGTGAGTGACTT
CTACGTTCCGGCTTCCGAGATGGCCGACCACAAGATCCAGTCCACCGGGA
AGCACCGGCAGAGGAAGCAAGCAGATGTGAAGGGGAAGGCTGAGGAGTGG
GATGGACTGACGCTGAACCTGCGCGCTGTGCCTAAGTGTCTTTCTCTTCT
CCGGCGAGAGTGGGCCCCGCACGCATTTGTCGTGTCCTTCAAGCTGGAAA
CGGACACAGACGTGCTCTTGGAAAAAGCGCAGGGGGCGGTGGCGCGGTAC
GGCGTGCATATGGTGGTGGCCAACCTTTTGCACACCCGCTACAGAGAGGT
GCAGCTTGTAAAGGCCTCGCCGCGGGCCCGGCAGGGGAGAGAAAGCGCCG
AGGCCACAGAGCCCTCCACCCCGATTTCGACCTGCTTTGAAGTGCGGAAA
GTAGTGCGAGATCCAGCTCAACCAGATTTGGAGGCGACTTTCGTTCCTTT
AGTCGCCCAGGCCCACTACACCTTCATCTCTGAGAGCGACCAGCCTTACG
GCCTTCCTCCCCCGCCTCTTCGGTCACTACCCGTCCCGTCCCTGTGGCAA
CGCCTTCGTCGGGTTGACCTGGCAGATCTCTTCATGGGGATGATCCTCGG
GCCCGGAGTAGTGCTTCTGTCGGTGGCCCTACAACGCAGGCTATTGGAGA
GGCTCAGAAATAGGTAGATTCTTGCGTTCTGCACACGATGTATTCCATAT
GTACGGCGGTAAATACACCAAATCAATTATATTGGATGGTGTCAAGTTCT
ACGCCTGCGTCGTTTCTTTATATGTATAGTTTCATGTGGGCGTTGTGCTT
CGTTGCACCGGAAAAAAGAACTAAGAATGCTCAAGTCGCCGCAACCTTGC
CACA

protein sequence of rna6726

>rna6726-protein ID=rna6726-protein|Name=rna6726|organism=Nannochloropsis gaditana|type=polypeptide|length=539bp
MDSRNVADLRWLARLFPSALSSIDENQEKREVLCLITLLQSADPLVGHTA
TSLLVEALRQAKSGSSKALVLDALWHLPDQDRWAALERKRLTNLLEAYRR
IVEEVCCGHGDREQGLEAPNERKATATCRKDKATGDYVRRVVTQALPTLH
EAAVQSFAASVTQDGGLRDEAELPLVWVSRLGSTLLQSYETEGNTGYNDN
HAVQEPFTNRKSTYEVEKRQLNKLLASLCQRCWLATEGVAYALESRRHLL
ELALLLLHSVSASGAENVDALKEECQTVEYLIGLCDAHWHDIEVSECDKQ
EAKEGKPPACSLVRPVRPSDLFVSSMALWTGCVKHIVLGRKRCNGSLPEW
EALSLRLLGSPFCRSHVFALTQEGQRRVLVSCLAEYDDKLMSVLRDMLLV
HWSLSILREAPSEGKRLVGSFLAASEPIALLHTLLDRLPNESAEQLFLEF
FLSDETCALEYLLSLAKFMIWQQQERREAWRHGESSPLKKSGVPHKSPEA
TVRAFLQRLRQRLEDWAAKRLFPFDPAVLVARLRRLEHS

mRNA from alignment at CM002469.1:353878..356892-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6726 ID=rna6726|Name=rna6726|organism=Nannochloropsis gaditana|type=mRNA|length=3015bp|location=Sequence derived from alignment at CM002469.1:353878..356892- (Nannochloropsis gaditana)
GGCCTTTGCGGGCACGTGCAACCCCTGATTATGCGCACACGTGTGTATCT
ACAGTTAAGGCATATTTTAGAACACTCTGCGCTACCCGCGGACTCCACTT
CGTCGTGACTTAGAGCTGCATTATGCTCCAAGGCAATGGACTCTCGCAAC
GTTGCAGACTTGCGATGGCTAGCCCGCCTATTCCCCTCCGCATTATCTTC
AATAGATGAAAATCAAGAGAAACGCGAGGTACTTTGTCTGATTACCTTGC
TGCAATCGGCGGATCCGCTCGTGGGCCACACGGCGACGTCCCTGCTTGTG
GAGGCCCTGCGGCAGGCCAAGTCCGGTTCCTCCAAAGCTCTGGTGCTTGA
TGCCTTATGGCATCTCCCGGACCAGGATCGCTGGGCGGCTTTGGAGCGAA
AGCGACTCACAAATCTTCTGGAAGCATATCGGCGTATTGTAGAAGAGGTA
TGCTGTGGACACGGGGATCGGGAACAAGGGCTGGAGGCGCCGAACGAAAG
AAAAGCGACCGCTACTTGCCGTAAGGATAAGGCAACGGGAGACTACGTGC
GCCGCGTTGTAACGCAGGCGTTGCCCACCTTGCATGAAGCAGCTGTGCAG
TCCTTTGCAGCGTCTGTCACACAAGATGGTGGTTTGCGCGATGAAGCGGA
GTTGCCTTTAGTCTGGGTTTCAAGGCTAGGCTCGACGCTGCTGCAGAGCT
ACGAGACGGAGGGGAATACGGGGTACAACGACAACCACGCCGTCCAAGAG
CCTTTCACGAATAGAAAAAGCACATATGAAGTGGAGAAACGTCAACTGAA
CAAGTTATTGGCGTCGTTATGCCAAAGGTGTTGGCTGGCAACAGAGGGCG
TTGCGTACGCCCTGGAATCGCGTCGACACCTGCTAGAGCTCGCGCTCTTG
CTCCTGCACAGTGTAAGTGCATCTGGAGCAGAGAACGTTGATGCTCTTAA
AGAGGAATGTCAGACTGTTGAGTATTTGATAGGCTTGTGTGATGCACATT
GGCATGACATCGAGGTGAGTGAGTGCGACAAGCAGGAAGCGAAAGAGGGG
AAGCCCCCTGCATGCTCATTGGTCCGTCCCGTGCGACCTAGCGATTTGTT
TGTAAGCAGCATGGCCCTCTGGACCGGATGTGTGAAGCACATTGTCTTGG
GGCGAAAGAGGTGCAATGGCTCACTGCCAGAATGGGAGGCTCTCTCCTTG
CGTCTGCTTGGCAGCCCTTTCTGCCGAAGCCATGTGTTCGCACTCACCCA
GGAGGGACAGAGACGGGTGCTAGTGAGCTGTCTAGCTGAGTACGACGACA
AACTCATGAGTGTACTGCGTGACATGCTGCTCGTGCACTGGAGCCTCTCC
ATCCTCCGAGAGGCCCCGTCAGAGGGGAAGAGGTTAGTGGGTTCGTTTCT
GGCTGCCTCCGAGCCCATTGCCCTCCTGCACACCCTCCTCGATCGCCTGC
CCAATGAGAGCGCGGAACAGCTTTTTTTGGAATTCTTCCTGTCTGACGAG
ACCTGCGCTCTAGAGTATTTGTTGAGTCTGGCCAAATTTATGATTTGGCA
GCAGCAGGAGCGCAGGGAGGCATGGAGACATGGGGAATCTAGTCCCTTAA
AGAAGAGTGGAGTTCCTCACAAGTCTCCGGAAGCAACGGTGAGAGCGTTT
TTGCAGCGACTGAGACAGCGGCTGGAGGACTGGGCCGCGAAACGCCTCTT
TCCCTTTGACCCGGCCGTCCTTGTGGCAAGGTTGCGGCGACTTGAGCATT
CTTAGTTCTTTTTTCCGGTGCAACGAAGCACAACGCCCACATGAAACTAT
ACATATAAAGAAACGACGCAGGCGTAGAACTTGACACCATCCAATATAAT
TGATTTGGTGTATTTACCGCCGTACATATGGAATACATCGTGTGCAGAAC
GCAAGAATCTACCTATTTCTGAGCCTCTCCAATAGCCTGCGTTGTAGGGC
CACCGACAGAAGCACTACTCCGGGCCCGAGGATCATCCCCATGAAGAGAT
CTGCCAGGTCAACCCGACGAAGGCGTTGCCACAGGGACGGGACGGGTAGT
GACCGAAGAGGCGGGGGAGGAAGGCCGTAAGGCTGGTCGCTCTCAGAGAT
GAAGGTGTAGTGGGCCTGGGCGACTAAAGGAACGAAAGTCGCCTCCAAAT
CTGGTTGAGCTGGATCTCGCACTACTTTCCGCACTTCAAAGCAGGTCGAA
ATCGGGGTGGAGGGCTCTGTGGCCTCGGCGCTTTCTCTCCCCTGCCGGGC
CCGCGGCGAGGCCTTTACAAGCTGCACCTCTCTGTAGCGGGTGTGCAAAA
GGTTGGCCACCACCATATGCACGCCGTACCGCGCCACCGCCCCCTGCGCT
TTTTCCAAGAGCACGTCTGTGTCCGTTTCCAGCTTGAAGGACACGACAAA
TGCGTGCGGGGCCCACTCTCGCCGGAGAAGAGAAAGACACTTAGGCACAG
CGCGCAGGTTCAGCGTCAGTCCATCCCACTCCTCAGCCTTCCCCTTCACA
TCTGCTTGCTTCCTCTGCCGGTGCTTCCCGGTGGACTGGATCTTGTGGTC
GGCCATCTCGGAAGCCGGAACGTAGAAGTCACTCACCGCACAGGCCAAAA
AGAACAGGGCATTCTGTCTAAAGGGAGCAAGGCAGCGAGCGGCAGATTGT
AGGATGAGAAGATAGTCTGTCACTGTCTCGTAAGAAACCTGCAGCAGCGT
ACCCTCCTCTCGCGCCTCTTGATACGCCTCAAGCGCCGCGCACAAGGAGG
CGGCCGCTCCTCCTTTGGCGTTCAGAACCAAGGCCCCGGTTTTCTCTCTC
ACGCGCAAGGCATCCATCAGAGCTCCGTCTACGTGCTCCGCGACCTCCGT
CTGGAACGTCCTGGAGAAAGGACAAGATGTCCCTGGACGATGCAAAAAAA
TGACTGCATAGCCCAGTCGCAGGAAGTATTCCGCCGAAGCCGCCCCGCGC
TTGCCTGTGCTGAAATTTTCTATGGATCGCACAGTATTGCGCTCCAAAGG
CGCAGCGGTGCCTCC

Coding sequence (CDS) from alignment at CM002469.1:353878..356892-

>rna6726 ID=rna6726|Name=rna6726|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002469.1:353878..356892- (Nannochloropsis gaditana)
ATGGACTCTCGCAACGTTGCAGACTTGCGATGGCTAGCCCGCCTATTCCC
CTCCGCATTATCTTCAATAGATGAAAATCAAGAGAAACGCGAGGTACTTT
GTCTGATTACCTTGCTGCAATCGGCGGATCCGCTCGTGGGCCACACGGCG
ACGTCCCTGCTTGTGGAGGCCCTGCGGCAGGCCAAGTCCGGTTCCTCCAA
AGCTCTGGTGCTTGATGCCTTATGGCATCTCCCGGACCAGGATCGCTGGG
CGGCTTTGGAGCGAAAGCGACTCACAAATCTTCTGGAAGCATATCGGCGT
ATTGTAGAAGAGGTATGCTGTGGACACGGGGATCGGGAACAAGGGCTGGA
GGCGCCGAACGAAAGAAAAGCGACCGCTACTTGCCGTAAGGATAAGGCAA
CGGGAGACTACGTGCGCCGCGTTGTAACGCAGGCGTTGCCCACCTTGCAT
GAAGCAGCTGTGCAGTCCTTTGCAGCGTCTGTCACACAAGATGGTGGTTT
GCGCGATGAAGCGGAGTTGCCTTTAGTCTGGGTTTCAAGGCTAGGCTCGA
CGCTGCTGCAGAGCTACGAGACGGAGGGGAATACGGGGTACAACGACAAC
CACGCCGTCCAAGAGCCTTTCACGAATAGAAAAAGCACATATGAAGTGGA
GAAACGTCAACTGAACAAGTTATTGGCGTCGTTATGCCAAAGGTGTTGGC
TGGCAACAGAGGGCGTTGCGTACGCCCTGGAATCGCGTCGACACCTGCTA
GAGCTCGCGCTCTTGCTCCTGCACAGTGTAAGTGCATCTGGAGCAGAGAA
CGTTGATGCTCTTAAAGAGGAATGTCAGACTGTTGAGTATTTGATAGGCT
TGTGTGATGCACATTGGCATGACATCGAGGTGAGTGAGTGCGACAAGCAG
GAAGCGAAAGAGGGGAAGCCCCCTGCATGCTCATTGGTCCGTCCCGTGCG
ACCTAGCGATTTGTTTGTAAGCAGCATGGCCCTCTGGACCGGATGTGTGA
AGCACATTGTCTTGGGGCGAAAGAGGTGCAATGGCTCACTGCCAGAATGG
GAGGCTCTCTCCTTGCGTCTGCTTGGCAGCCCTTTCTGCCGAAGCCATGT
GTTCGCACTCACCCAGGAGGGACAGAGACGGGTGCTAGTGAGCTGTCTAG
CTGAGTACGACGACAAACTCATGAGTGTACTGCGTGACATGCTGCTCGTG
CACTGGAGCCTCTCCATCCTCCGAGAGGCCCCGTCAGAGGGGAAGAGGTT
AGTGGGTTCGTTTCTGGCTGCCTCCGAGCCCATTGCCCTCCTGCACACCC
TCCTCGATCGCCTGCCCAATGAGAGCGCGGAACAGCTTTTTTTGGAATTC
TTCCTGTCTGACGAGACCTGCGCTCTAGAGTATTTGTTGAGTCTGGCCAA
ATTTATGATTTGGCAGCAGCAGGAGCGCAGGGAGGCATGGAGACATGGGG
AATCTAGTCCCTTAAAGAAGAGTGGAGTTCCTCACAAGTCTCCGGAAGCA
ACGGTGAGAGCGTTTTTGCAGCGACTGAGACAGCGGCTGGAGGACTGGGC
CGCGAAACGCCTCTTTCCCTTTGACCCGGCCGTCCTTGTGGCAAGGTTGC
GGCGACTTGAGCATTCTTAG

Synonyms

Publications