rna6721, rna6721 (mRNA) Nannochloropsis gaditana

Overview
Namerna6721
Unique Namerna6721
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1275
Alignment locationCM002469.1:341620..343704 +

Link to JBrowse

Properties
Property NameValue
Productstearoyl- desaturase 5
Orig transcript idgnl|cribi|Naga_100027g27.153.mrna
Orig protein idgnl|cribi|Naga_100027g27.153
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:341620..343704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100027g27gene6498Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6721rna6721-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23975.1cds6705Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6721 ID=rna6721|Name=rna6721|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp
GCCACCGCCTCTGCACGGATATCTGGCTACTTACCAAGTTCATTGATCTG
TTCTTTGAGCAGCAATCCCTCCTTCGAACGTCGTCCGCCTCTCTCAGCGT
TTTTGCTACCCTTTGAATGTGCTCTACTCCGTTCTCGCCCAACGCACACA
CGTTTATTCCCTTCAAACGCCCTGAAGTGGAATTGCCTCTCAACAAAACC
GTGGTGCTTTCGGGCATCATACTGTGTGAAATGAGCAAATGAGAAACATA
GAACACAAACGAGAAGCAAAGAATCGATGCAGGGTTCACATGATTCGCTA
TAAGTCTTCTTCTGTTTCTCTAATGTCTGTCCGTCATCATGGGGCTTCTT
TGCGTCCAATCTACGCATCAAGGCTCGTTTCGAGTTTTAGTAACTTAACG
TTTGCCGCGAAACAGAGTCCCTTGTCATAGGACTACAGGGCTTCTGATCT
CCTCAACTTAAATGAAGTGATTCAATTAGTCGAAGGTTTGCAAAATTCAT
CACGTTGATGGATAAATGGCGTGAGCACCGCTGGGAGCTTGTACATAGCA
AATTAATGCTGAAGGTCGAAATATAATACATTGCTAAGCGATCATGTCTA
TCTAAATGTCTATCTAAATGTAGCCATTTCTTTGTAATTCATAGTGGTGG
TCCTATGCCTTTTCTCGAACGCACTTTTCGCAGGATATATGAAGGCAGTG
AAGAACAAGAGTGGTCTTTCAATGGATTAAATCTGAGGTCATGGCGTCGC
CCAAAAGAAAATCTATAATTATGATGGCTTACTCCGATTGTGTATGGAAA
AAGTATGCGGATGGAGGGCAAATTATCCTGAGGCAGAGGGTTACCGGGGG
TAGCACGGCTGCACGGTCACTCAATAGTCCACTCTTCGAAGTATACCACA
CAAGGCTTGCTCACTATCGAAGGAAGAGTCGGCTTACTCGCAGACCATTT
AACGAAGAGCGATGCTATTTTCAGTGTGCATTTGCGAATGAGAAAATCTT
TTATTTTATATTTGACCTTCGAGCGGTAAAGCACCCTCATTCCAGACTGT
GCCTTAGGGCTGCCGTGCCATCACATTTAAACTTTCACAGGGGTCAATAC
AAGCAGTTTTCTTTACCTGGGGGCCGAAACAAGATTCAGAAATTAGAATA
TAACATAAAATATTAATGAGGAATCCGACACACATGACCTCCCAACTACA
AAGTGTACTGTAGATATGCCAATTCTGTGCATTCTGTGCTAAAAAAGAAG
ACACGCGGATAGACTTGTTGTCCTC
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protein sequence of rna6721

>rna6721-protein ID=rna6721-protein|Name=rna6721|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MVFQLARDALSALVYHYKEGNLNWPMIIYLVLAHLAAYMGLVSIPSCKWQ
TLLEAFILWPITGLGITAGVHRLWAHRSYTATLPYRILLMLFNSIANQGS
IYHWSRDHRVHHKYSETDADPHNATRGFFFAHMGWLIVKKHPKVVEGGKQ
LDFSDLAADPVVRFQRDWDPWFAQFMCFVMPALVARYFWGEAFWNAFWVA
GGLRYCLVLHFTWMVNSAAHLYGDHPYDPTIWPAENPLVSVVAIGEGWHN
WHHRYPYDYAASEFGISRQFNPTKAFIDFFAAIGMVSNRKRATGAWAKLR
ESRAKDEANGKSIKDFRGRGVVQGTAQPPGWEQSAHPKYN
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mRNA from alignment at CM002469.1:341620..343704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6721 ID=rna6721|Name=rna6721|organism=Nannochloropsis gaditana|type=mRNA|length=2085bp|location=Sequence derived from alignment at CM002469.1:341620..343704+ (Nannochloropsis gaditana)
ACTCGCACACCAGTGTTCTCGCTTTATCGTTGTGCTAGGTTTTATCTCCT
CCGTTCGCGTTCGCGAGGCAGCCGCCGCGTGCCTCAAGCCGAGGCGGGTG
CTGTGGGGCATACGTGGTGGTTTTCGGTCACTGAAGGGCTCGTGAATCAG
TGAATTCATGGGAAACTCACTTTCACCTTGCCCAAAAGAGTGCTCTGGGT
GTTGGTGCTTCAGGCCTATCCGTGGACGTCTGAGCCAGGCCCAACACCTG
ACTACCCTACCCTCCACTACCCCTGCTCTCCCCTTTGAGCTGCCGGGTCC
CTATGAGATGATAGATTGGTCCATCCTACGTGTTAGCGCGCACTATTAGA
CTCTATGTATCTCTTCCGCTCGTGTTTGGGCGCTGAAACCCGCCTAGGAT
ATGACAAGCGAAATTCTGTGACGGAAGTCCTGACGTTCAGGAGACGCACG
CTCACGAGTCATGAATGTCAAGGTCAGCCTGCACGTAGATGTCCTCACCA
TCCCTTCACTCTCTCTCATACATAACCTCGCAGATCATCACCTGGGATCG
TCATCGACAGAAACCCTCCGAAGTAAAGCACTCAAAAAAAGATGGTCTTC
CAGTTGGCTCGCGATGCCTTGTCGGCGCTTGTCTACCACTACAAAGAGGG
CAACCTGAATTGGCCCATGATCATCTACCTAGTCCTCGCGCACCTTGCCG
CCTACATGGGGCTGGTCTCCATCCCTTCATGCAAGTGGCAGACCCTTCTG
GAGGCCTTCATCCTGTGGCCCATCACCGGGTTGGGCATCACGGCCGGCGT
CCATCGTCTGTGGGCGCATCGCTCCTACACTGCCACCTTGCCGTaccgca
tcctcctcatgcTCTTCAATTCGATTGCGAATCAAGGCAGCATCTACCAC
TGGTCCCGGGATCATCGCGTTCACCACAAGTACTCGGAGACAGATGCGGA
TCCTCACAATGCCACCCGTGGCTTCTTCTTCGCGCACATGGGGTGGCTTA
TCGTTAAGAAACACCCGAAGGTAGTAGAAGGCGGCAAACAGTTGGATTTC
TCTGATCTTGCTGCGGACCCGGTGGTCCGTTTCCAGCGTGACTGGGACCC
GTGGTTCGCGCAATTCATGTGCTTCGTCATGCCGGCGCTGGTCGCCAGAT
ATTTCTGGGGTGAGGCCTTTTGGAACGCATTTTGGGTTGCAGGGGGCCTC
CGCTACTGTCTGGTCCTGCATTTCACCTGGATGGTGAACTCCGCCGCCCA
CTTATACGGCGATCACCCCTACGACCCCACCATCTGGCCCGCCGAGAACC
CGCTAGTATCGGTGGTGGCcatcggggagggatggcacAATTGGCATCAC
CGGTATCCCTACGACTATGCGGCATCTGAGTTCGGGATCTCCCGACAATT
TAACCCTACGAAGGCTTTCATTGACTTCTTTGCTGCCATCGGTATGGTCT
CGAATCGAAAGCGGGCGACAGGGGCCTGGGCCAAGCTCAGGGAGTCACGG
GCGAAGGACGAGGCGAACGGGAAGAGCATCAAAGATtttcgaggacgagg
agttGTCCAAGGCACCGCACAGCCACCGGGATGGGAACAAAGCGCGCACC
CCAAGTACAACTGATCGAAAAAAGTCTTGTACTCGATGAAGGACTGGAGG
GCGTAGGGAAACGATGTTGAGAGGTGACCGATTCGGTGACAGCAATGTGC
TTTTTTCTGCCTTTGTTCCATAGGTCGTTAATTACGACACAGGTGGTAAC
TGGGGATAAGATGCATTTAATTCTACGGTCAAAAAATGTGAGAGTTTGAA
GACCCGACTTAGGGTGAAACTTTATTGCGTAGGTGTCGCGGGTGAGCTAC
CCTTGCATGTGCATGCCAGTCTGAAACACACGAGTCTTCGCCCGCCACGG
CTCCTCGTCCCGTACAATTTCCCTCAATTAGAAATAGCCGCATCGATACG
ATCGCAACGTGTATAGGTGTTAAGGGATCAGACGTGCGTAAAATAAGAAA
CCCAGCAATTACTATTTATAACTACTTATCGCACAGCTCCCAGCCAGTTC
GCTGGAAATGAACGTTATATCGAGTTGATATAAAT
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Coding sequence (CDS) from alignment at CM002469.1:341620..343704+

>rna6721 ID=rna6721|Name=rna6721|organism=Nannochloropsis gaditana|type=CDS|length=1023bp|location=Sequence derived from alignment at CM002469.1:341620..343704+ (Nannochloropsis gaditana)
ATGGTCTTCCAGTTGGCTCGCGATGCCTTGTCGGCGCTTGTCTACCACTA
CAAAGAGGGCAACCTGAATTGGCCCATGATCATCTACCTAGTCCTCGCGC
ACCTTGCCGCCTACATGGGGCTGGTCTCCATCCCTTCATGCAAGTGGCAG
ACCCTTCTGGAGGCCTTCATCCTGTGGCCCATCACCGGGTTGGGCATCAC
GGCCGGCGTCCATCGTCTGTGGGCGCATCGCTCCTACACTGCCACCTTGC
CGTaccgcatcctcctcatgcTCTTCAATTCGATTGCGAATCAAGGCAGC
ATCTACCACTGGTCCCGGGATCATCGCGTTCACCACAAGTACTCGGAGAC
AGATGCGGATCCTCACAATGCCACCCGTGGCTTCTTCTTCGCGCACATGG
GGTGGCTTATCGTTAAGAAACACCCGAAGGTAGTAGAAGGCGGCAAACAG
TTGGATTTCTCTGATCTTGCTGCGGACCCGGTGGTCCGTTTCCAGCGTGA
CTGGGACCCGTGGTTCGCGCAATTCATGTGCTTCGTCATGCCGGCGCTGG
TCGCCAGATATTTCTGGGGTGAGGCCTTTTGGAACGCATTTTGGGTTGCA
GGGGGCCTCCGCTACTGTCTGGTCCTGCATTTCACCTGGATGGTGAACTC
CGCCGCCCACTTATACGGCGATCACCCCTACGACCCCACCATCTGGCCCG
CCGAGAACCCGCTAGTATCGGTGGTGGCcatcggggagggatggcacAAT
TGGCATCACCGGTATCCCTACGACTATGCGGCATCTGAGTTCGGGATCTC
CCGACAATTTAACCCTACGAAGGCTTTCATTGACTTCTTTGCTGCCATCG
GTATGGTCTCGAATCGAAAGCGGGCGACAGGGGCCTGGGCCAAGCTCAGG
GAGTCACGGGCGAAGGACGAGGCGAACGGGAAGAGCATCAAAGATtttcg
aggacgaggagttGTCCAAGGCACCGCACAGCCACCGGGATGGGAACAAA
GCGCGCACCCCAAGTACAACTGA
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Synonyms
Publications