EWM24041.1, cds6623 (CDS) Nannochloropsis gaditana

Overview
NameEWM24041.1
Unique Namecds6623
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:152674..152756 -
Alignment locationCM002469.1:152232..152471 -
Alignment locationCM002469.1:151787..152107 -
Alignment locationCM002469.1:151467..151673 -

Link to JBrowse

Properties
Property NameValue
Start range151467
Start range.
Protein idEWM24041.1
Productprotein atypical group
Partialtrue
Orig transcript idgnl|cribi|Naga_100280g1.2290.mrna
Genetor
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:152674..152756 -
CM002469.1supercontigCM002469.1:152232..152471 -
CM002469.1supercontigCM002469.1:151787..152107 -
CM002469.1supercontigCM002469.1:151467..151673 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0005829cytosol
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0009987cellular process
GO:0042221response to chemical
GO:0048856anatomical structure development
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
Homology
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|585105332|gb|EWM24041.1| (protein atypical group, partial [Nannochloropsis gaditana])

HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MATLEMENSSVHFLIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQVGRERRGGGGVGG 284
            MATLEMENSSVHFLIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQVGRERRGGGGVGG
Sbjct:    1 MATLEMENSSVHFLIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQVGRERRGGGGVGG 284          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|553185609|ref|XP_005854275.1| (protein atypical group [Nannochloropsis gaditana CCMP526] >gi|422294780|gb|EKU22080.1| protein atypical group [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 386.341 bits (991), Expect = 5.721e-130
Identity = 190/196 (96.94%), Postives = 192/196 (97.96%), Query Frame = 0
Query:   20 SKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTR 215
            SK +  +T AAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTR
Sbjct:  281 SKPSSKKTSAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTR 476          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|1013938000|gb|KYQ91695.1| (protein kinase [Dictyostelium lacteum])

HSP 1 Score: 210.305 bits (534), Expect = 6.209e-58
Identity = 114/259 (44.02%), Postives = 164/259 (63.32%), Query Frame = 0
Query:   14 LIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQ 271
            ++  L++K  + R +A+K L++ + + SR ++ E F +F QD+   +F LV++  S + EK+GG+ A+DEL+DV   +  TK+ + AN L   L S+ +Y  +L ASR LG LARSS    A+ VEFEV R +EWLS E+  +RR AA  VLKELA NAPTLFY   G F+D +WVAL+D K  IR  A  AL  CL ++S R +   + WY K+Y++ Q        + G   A+HGSL+ +GE+L  TGDFMV +F+
Sbjct:   17 ILVDLKNKKEEDRIKASKSLKNYVITQSREMTNENFTKFMQDVNNLIFELVNS--SGVNEKIGGIMAIDELIDVDYDENATKITRLANYLRIGLCSN-DYTVMLMASRALGRLARSSGTLTAECVEFEVTRALEWLSGERYEARRHAAVLVLKELAQNAPTLFYVHAGSFVDLIWVALKDTKVAIRDGAVEALRACLELISERESRLRLQWYQKIYDEAQKAF----KQNGSPEAIHGSLIALGELLRNTGDFMVTKFK 268          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|831777573|ref|XP_012755147.1| (hypothetical protein SAMD00019534_052220 [Acytostelium subglobosum LB1] >gi|735855779|dbj|GAM22047.1| hypothetical protein SAMD00019534_052220 [Acytostelium subglobosum LB1])

HSP 1 Score: 200.29 bits (508), Expect = 1.907e-54
Identity = 110/259 (42.47%), Postives = 164/259 (63.32%), Query Frame = 0
Query:   14 LIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQ 271
            ++  L++K+ + R +AA+ LR+ + +  R +S E+F RF  D+   +F LV++  + + +K+GG+ A+DEL+DV   +  +KV KFAN L   L S+ +   +L AS+ LG LARSS    AD VEFEV R +EWLS ++  +RR AA  VLKELA N+PTLFY    +F+D++WVALRD K  IR  A  AL  CL +++ R +   + WY K+Y++ Q        + G   ++HGSLL +GE+L  TGDFM  +F+
Sbjct:   17 ILLDLKNKNEEHRQKAARGLRTYVITQFREMSNESFTRFMGDVNNILFELVNS--NSISDKIGGIMAIDELIDVDYDENASKVTKFANYLRIGL-STNDLTVMLMASKALGRLARSSGTLTADIVEFEVTRALEWLSGDRYENRRHAAVLVLKELAQNSPTLFYVHAANFVDQIWVALRDTKVAIREGAVEALRACLELIAERESRLRLQWYQKIYDESQKAF----KQNGSPESIHGSLLTLGELLRNTGDFMFNKFK 268          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|66812900|ref|XP_640629.1| (protein kinase, Atypical group [Dictyostelium discoideum AX4] >gi|74841818|sp|Q86C65.1|TOR_DICDI RecName: Full=Target of rapamycin >gi|28569600|gb|AAO43977.1| Tor [Dictyostelium discoideum] >gi|60468543|gb|EAL66546.1| protein kinase, Atypical group [Dictyostelium discoideum AX4])

HSP 1 Score: 199.519 bits (506), Expect = 3.182e-54
Identity = 110/260 (42.31%), Postives = 160/260 (61.54%), Query Frame = 0
Query:   14 LIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQR-VFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQ 271
            L+  L+SK  + R +A+K L+S + S SR ++ E F +F  +L    +F LV++   P  EK+GG+ A+DEL+DV   +  TK+ + AN L   L  + ++  +L AS+ LG LARSS    A++VEFEV R +EWLS ++  +RR AA  VLKELA NAPTLFY     F+D +WVAL+D K  IR  A  AL  CL ++S R +   + WY K+Y++ Q        + G   ++HGSL+ V E+L  TGDFM+ +F+
Sbjct:   17 LLNDLKSKKEEDRVKASKNLKSYVISQSREMTNENFTKFMNELNNNLIFELVNSSVIP--EKIGGIMAIDELIDVDYDENATKITRLANYLRIGLGFN-DFTVMLMASKALGRLARSSGTLTAEFVEFEVTRALEWLSGDRIEARRHAAVLVLKELAQNAPTLFYVHASSFVDLIWVALKDPKVAIREGAVEALRACLELISERESRLRLQWYQKIYDEAQKSF----KQNGSPESIHGSLITVSELLRNTGDFMLSKFK 269          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|470239816|ref|XP_004351877.1| (protein kinase [Dictyostelium fasciculatum] >gi|328866774|gb|EGG15157.1| protein kinase [Dictyostelium fasciculatum])

HSP 1 Score: 199.134 bits (505), Expect = 3.782e-54
Identity = 109/259 (42.08%), Postives = 161/259 (62.16%), Query Frame = 0
Query:   14 LIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQ 271
            ++  L++K  + R R AK L++ + + SR ++ E F+ F QD+   +F LV++  S + +K+GG+ A+DEL+DV   +   K+ K AN L + L S+ +   ++ ASR LG LARSS    A+ VEFEV R +EWLS E+  +RR A+  VLKELA NAPTLFY     F+D +WVAL+D K  IR  A  AL  CL +++ R +   + WY K+Y++ Q        + G   A+HGSL+ +GE+L  TGDFMV +F+
Sbjct:   18 ILSDLKNKKEEDRIRGAKNLKNYVITQSREMTNENFSNFMQDVNTIIFELVNS--SGITDKIGGILAIDELIDVDYDENAAKITKLANYLRYGL-STNDQTVMMMASRALGRLARSSGTLTAECVEFEVTRALEWLSGERVENRRQASVLVLKELAQNAPTLFYVHAASFIDLIWVALKDVKLSIREGAVEALRACLELIAERESRLRLQWYQKIYDESQKAF----KQNGSPEALHGSLITLGELLRNTGDFMVNKFK 269          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|1160574701|ref|XP_020429873.1| (protein kinase [Polysphondylium pallidum PN500] >gi|281203546|gb|EFA77745.1| protein kinase [Polysphondylium pallidum PN500])

HSP 1 Score: 197.978 bits (502), Expect = 1.087e-53
Identity = 109/259 (42.08%), Postives = 161/259 (62.16%), Query Frame = 0
Query:   14 LIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFMVPRFQ 271
            ++  L++K  + R +A+K LR+ + + SR +S E F +F QD+   +F LV++  + + EK+GG+ A+DEL+DV   +   K+ K AN L  +L S+ +   +  AS+ LG LARSS    A+ VEFEV R +EWLS ++  +RR A+  VLKELA NAPTLFY    +F+D +WVALRD K  IR  A  AL  CL +++ R +   + WY K+Y++ Q        + G   A+HGSL+ +GE+L  TGDFM  RF+
Sbjct:   17 ILSDLKNKKEEDRIKASKNLRNYVITQSREMSNENFTKFMQDVNVIIFELVNS--NGIAEKIGGILAIDELIDVDYDENAAKITKLANYLRIAL-STNDQTVMQMASKALGRLARSSGTLTAECVEFEVTRALEWLSGDRYENRRHASVLVLKELAQNAPTLFYVHAANFVDLIWVALRDTKLAIREGAVEALRACLELIAERESRLRLQWYQKIYDESQKAF----KQNGSPEAIHGSLITLGELLRNTGDFMYNRFK 268          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|1183322781|gb|ORX52573.1| (phosphatidylinositol kinase Tor2 [Piromyces finnis])

HSP 1 Score: 195.282 bits (495), Expect = 9.236e-53
Identity = 106/260 (40.77%), Postives = 162/260 (62.31%), Query Frame = 0
Query:    8 NSSVHFLIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFM 266
            N  ++ ++  L+S+  +T+ +AA ELR  + S SR +S E F +F  D+ +R+FSL+ + D+   EK+GG+ A+D+L+D    +  TK+ +FAN L F L  + + + ++ AS+ LG LA+S      ++VEFEV R +EWL  ++  S+R AA  VLKELA NAP L YA     L+ +WV L+D K +IR  AA ALS CL ++  R   ++ +WY K+ E+ Q GL     K G +  +HG LLV+ E+L +TG+FM
Sbjct:    9 NEVLNRILNDLKSRSEETKYKAANELRDHVISISREISGENFTKFINDVNRRIFSLIQSNDND--EKIGGILAIDKLIDFDGEENTTKITRFANYLRFVLPGN-DLQTMVLASKALGRLAQSGGTLTPEFVEFEVKRALEWLQGDRHESKRYAAVLVLKELAQNAPILIYAYVPKILNLIWVVLKDPKVVIREGAADALSVCLVLIQQRDGNSNNSWYSKILEEAQRGL-----KFGSSDTIHGCLLVIRELLLHTGNFM 260          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|1183354331|gb|ORX82129.1| (phosphatidylinositol kinase Tor2 [Anaeromyces robustus])

HSP 1 Score: 194.512 bits (493), Expect = 1.507e-52
Identity = 105/260 (40.38%), Postives = 161/260 (61.92%), Query Frame = 0
Query:    8 NSSVHFLIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVPSADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSEQ-SSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFM 266
            N  ++ ++  L+S+  +T+ +AA +LR  + S SR +S E F +F  D+ +R+F+L+ + D+   EK+GG+ A+D+L+D    +  TK+ +FAN L F L  + + + ++ AS+ LG LA S      ++VEFEV R +EWL  ++  S+R AA  VLKELA NAP L YA     L+ +WV L+D K +IR  AA ALS CL ++  R + +  NWY K+ E+ Q GL     K G +  +HG LLV+ E+L +TG+FM
Sbjct:    9 NEVLNKILNDLKSRSEETKYKAANDLRDHVISISREISGENFTKFINDVNRRIFALIQSNDND--EKIGGILAIDKLIDFDGEENTTKITRFANYLRFVLPGN-DLQTMVLASKALGRLALSGGTLTPEFVEFEVKRALEWLQGDRHESKRYAAVLVLKELAQNAPILIYAYVPQILNLIWVVLKDPKVVIREGAADALSVCLVLIQQRESSSRNNWYTKILEEAQKGL-----KFGSSDTVHGCLLVIRELLLHTGNFM 260          
BLAST of EWM24041.1 vs. NCBI_GenBank
Match: gi|1063248030|gb|ODQ70535.1| (hypothetical protein LIPSTDRAFT_169754 [Lipomyces starkeyi NRRL Y-11557])

HSP 1 Score: 191.43 bits (485), Expect = 2.304e-51
Identity = 104/263 (39.54%), Postives = 154/263 (58.56%), Query Frame = 0
Query:    6 MENSSVHFLIQGLRSKDAQTRTRAAKELRSSMESASRSLSIETFARFEQDLFQRVFSLVHAPDSPLWEKLGGLEAMDELLDVP-SADTETKVIKFANKLSFSLRSSIEYEFLLQASRTLGHLARSSVVPNADYVEFEVDRGVEWLSSE-QSSRRLAACFVLKELAANAPTLFYAKTGDFLDRVWVALRDQKPIIRLNAARALSGCLRMLSTRSALNHVNWYCKVYEQVQVGLLTGPGKGGQTSAMHGSLLVVGEMLSYTGDFM 266
            M+NS ++ +   LRSK    R R+A++LR  +    R L I+ F R+  D+ +R+F L+H+ D+  ++KLGG+ A+D+L+D   + +  TK+ +FAN L   + S+ + + +  A++ LG LA        D+VEFEV R +EWL S+ Q SRR AA  ++ ELA N PT+ YA     LD +WVALRD K  +R +AA AL  CL+++  R       WY K+YE+ Q G      + G   A+HGSLLV  E+    G FM
Sbjct:    1 MDNSVLNHIFSDLRSKSPDVRNRSAEDLRDHLLLVVRELPIDQFTRYNNDVNRRIFELIHSTDT--YDKLGGITAIDKLIDFDGTEENATKITRFANYLRIVIPSN-DVDAMRVAAKALGRLAIPGGTLTVDFVEFEVKRALEWLQSDRQESRRQAAMLIISELAQNCPTILYAYVTQILDLIWVALRDPKVTVRNDAADALRACLKIIYQRDNQLRQQWYSKIYEEAQKGF-----RIGSADAIHGSLLVYRELFEQAGMFM 255          
The following BLAST results are available for this feature:
BLAST of EWM24041.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105332|gb|EWM24041.1|0.000e+0100.00protein atypical group, partial [Nannochloropsis g... [more]
gi|553185609|ref|XP_005854275.1|5.721e-13096.94protein atypical group [Nannochloropsis gaditana C... [more]
gi|1013938000|gb|KYQ91695.1|6.209e-5844.02protein kinase [Dictyostelium lacteum][more]
gi|831777573|ref|XP_012755147.1|1.907e-5442.47hypothetical protein SAMD00019534_052220 [Acytoste... [more]
gi|66812900|ref|XP_640629.1|3.182e-5442.31protein kinase, Atypical group [Dictyostelium disc... [more]
gi|470239816|ref|XP_004351877.1|3.782e-5442.08protein kinase [Dictyostelium fasciculatum] >gi|32... [more]
gi|1160574701|ref|XP_020429873.1|1.087e-5342.08protein kinase [Polysphondylium pallidum PN500] >g... [more]
gi|1183322781|gb|ORX52573.1|9.236e-5340.77phosphatidylinositol kinase Tor2 [Piromyces finnis... [more]
gi|1183354331|gb|ORX82129.1|1.507e-5240.38phosphatidylinositol kinase Tor2 [Anaeromyces robu... [more]
gi|1063248030|gb|ODQ70535.1|2.304e-5139.54hypothetical protein LIPSTDRAFT_169754 [Lipomyces ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6639rna6639Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications