rna6558, rna6558 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6558
Unique Name	rna6558
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1794
Alignment location	CM002468.1:793283..795139 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial fission 1 protein
Orig transcript id	gnl\|cribi\|Naga_100810g1.8469.mrna
Orig protein id	gnl\|cribi\|Naga_100810g1.8469
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:793283..795139 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100810g1	gene6336	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6558	rna6558-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24132.1	cds6542	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:793283..795139+
coding sequence from alignment at CM002468.1:793283..795139+

mRNA sequence

>rna6558 ID=rna6558|Name=rna6558|organism=Nannochloropsis gaditana|type=mRNA|length=1794bp
GGCGGTGCCCTTAAAGACGTATGTCCATGCCCACTCGACGTTATGTCGCG
TCGTGTAGGCATCAGGAGAAAGGCCCGGTGTATGATAGGACTTAGAGACG
ATCGTAGCTTTCTATTCCTCCCCGGCCCAACGACCGAAAAAGTCCTTTTC
TACGCAACTGACATCCCTGACGTCGTGCTGGTTTTTGGGCCATGGCACGC
CATCGGCATTTTACCAAGTGCATTTGGACACCTTGACATGACGCACGACT
TTTCCATCGCACCCAGATGCTTGGAGCTTGAGGGGATGCAGGCGACGTCG
GGAAACGAGCACCCGAGCGAAGACACACTATGCCTGTCTTACGTCCTCTC
TTCCTTCCATTTCCCTTACCTTTCCACCTGCATAAGTCGTCAGGACGCTC
TGCAATTTATTAAATTGGACGAAGGAGGTGAAACACAACGGACATGGACT
CTGCCGCACCACCCTCGTCCCAAGCGGACGGGGGCGTGCCGCACGGGCAT
AACGACGTTGCCCAAATTCAGACCAAAAACAACATGGGCTTCGACATGGG
GATACCCTCCTACCGAGCGGATACCTGGTGGAGCTCGTACGACCCCCAGC
ATCCCGAGCTACCGCTCGTGGACATCGGCTCGGGCTTGGGCACGAATGTC
CTGGCGGCTTTGCGTCACGGCGCAAGGGTCATCGCCGTCGACATGAGCGA
CGATCACCTGGCCGAAATCCGAGCCAAGGCCACGGCCCTCGATTCCAACG
CACCGGGCGTAACGGCGGGTGAAACGGCCGAGAAACGGCTGGAAACCCGT
TGGGGACGGTTACCGGACCAGGTGCCGTTGTCCCCCCGGTCGGTTTCGGG
GATTTTGTGCGCCCAAGTCCTCCATTTTTTGAACCCCGACGGCGTTCGGG
CCTCCTTCCAACGTTTCTCCGAGTGTTTGGCGCCGGGGGGGGTCCTCGTC
GTGTTGGCCTGTGGGCATTATCAAAAATTGTGCTCGCTGATTCCCGGTAA
AATCGCGGCCATTGACGCTGCCACCCTGCGCGACCCCGCTGGCAGCCACG
GGTGTGTGACGCGTGAAGAAATGAAGCCCATGACGGAAGCGATTCGAGCC
GTGTTGCCCGAAGAGTTGCACCCGGCGGTTTTGAAAGACACAACGGAATT
TCAAACGTTCTCACCGCAGCATTTGGAAACGGTCGCGCAGGCGGTGGGTC
TGGAGGTGGAAGTCGCCGAATTTTGCGACGGACGGTTGAGCAATTATCCG
GTGTTTTTGTACGAAGAGAAAGAGGAGGATCGGGGCCGAGAACAGGTGCT
CTTGATTGCAAGAAAGCCGGGGCCTTGAATTTGACAGGAGGTTCGGCGTT
TCTTCGGCGTTTTCTTGGCGTTGTGGCCCGGTGCAAAGGTGGGATTTTAG
GGGATGATCGGGAAGTAGTGACGGAGAGGCAAGGTCATGGGTATGGTCCC
CGGGAAAATGAAATAATGAATGATGATTGATTATTTCCCCGGGAAAATGA
AATAATGATTATCGTCTAAAAAGAGGAAAGTGGAATGTCAGCCAAGCAGA
GGCATGAGAGAAGGAGAGGGTGCAGAGAGAAGGAAGGACAGATCCGATCG
CGCTCGGCCGAACAGATTACCAACGGCTATCAATTTCATGTCTGTACACG
CACTGCGCTCCCCCCTTCTGCTTTCCTGCCCACGGGGATTCCCCCCCCTT
CGGCGCCGACCTTAGGGATCAGTGTCACGCTTACAGGGGGTCACTTTGTT
GTTAAATTACATCCCGCTCCCTGCGAGAGCTCCAAGAGCCTCCT

protein sequence of rna6558

>rna6558-protein ID=rna6558-protein|Name=rna6558|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MTVKEDRDIFEQKLQVEAKASKEQIPDKEAAWEAERKKAKPDLNVKFIYA
YVLTMSNSERHKSMGMRLLNELIAARFNVEECLYALAVCLYSQTEWRECR
EVVDRLLRLNPDHRYGNELHLFVKDAQAKQDLAIGVGVGVGVIGATAAIL
LGAMLGSGRRGR

mRNA from alignment at CM002468.1:793283..795139+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6558 ID=rna6558|Name=rna6558|organism=Nannochloropsis gaditana|type=mRNA|length=1857bp|location=Sequence derived from alignment at CM002468.1:793283..795139+ (Nannochloropsis gaditana)
CTCGAATCCGATCGCGCGTACACATCTCATAAGAAAGGCATAATTTGGGT
GTGAATAGCCATGACTGTAAAAGAGGACCGAGACATCTTCGAACAGAAGC
TCCAGGTAGAGGCGAAGGCAAGTAAAGAACAGATTCCGGTAAGTAAGCAT
ATACGTAACTACACAACCAAGGGAGCATAGACCGATGCATTTCTTTGGTC
TGCGAAGGTTTTTTTGTCATAAAGACACTGTAATAGCCATGGTATTGATC
GCCACATGTCACGCGTCCTTTTcgggccttttccccctctaaGGACAAAG
AAGCAGCCTGGGAAGCCGAGCGCAAGAAAGCGAAGCCTGATTTGAACGTC
AAATTCATCTATGCCTACGTCTTGACCATGTCCAACTCGGAACGGCACAA
ATCCATGGGCATGCGGTTGCTGAacggtggggaaggagggaaggaggcta
TGAAAGAAGGCTAttggagggatgaggagggattgATGGGATGCTTCGCC
CATGTAGACTCTCCTTATCCTCGTCTGTGCGGGctctttctccatttcct
gccgcccctcttttctctatTCCTGCCATttgtctcctttccttcctttt
ccttcttcgctcccttttctcgctttctttctccttcccccccttccccc
tttcgtCTTTCCGCTCGCCAAGGCGCCCTCGCTTTTTTCCacaaccccct
ccctccctccctcccttccccccccctccctccctccctccccccctccc
tcttcctctcccacagAGCTGATTGCGGCCCGTTTCAACGTGGAGGAATG
CCTGTATGCGTTGGCGGTGTGTTTGTACAGCCAAACGGAATGGCGGGAGT
GTAGGGAGGTAGTGGACCGTCTCCTGCGCCTCAACCCCGACCATCGTTAC
GGCAACGAACTCCACCTCTTTGTCAAGGACGCgcaaggtgagggagggag
ggagggagggagggaggggaggaggggagggccgcgTGCATAGGCTCCTG
GTGACGGTCCAGGGAGGTAGGCGAAGAGGCGCGATAAACAAAAATGGCGC
CTAGGTAGGCTTTAAAATCGTGCACCATCCCCAAGACACGTAGCGTGTCA
TGTCATGCGTgggcctttccttcctctatTCCTGTCGCTTTGTGGGGATC
GCCCCAGCCCCCGCCATCGCCCCCCCTGGATGGGAATCACCCACCttctc
atttccctccttctcttcctaTGAACGCCATGGTCGGCCCATGTCTGCAG
CCAAGCAAGATTTGGCGATAGGCGTGGGGGTCGGGGTGGGGGTCATCGGT
GCCACTGCCGCGATTCTACTTGGGGCGATGCTGGGAAGCGGACGTCGTGG
ACGGTGAGGTGTTGGTATAGCATTCAGGTGGTGGGATGggatgggggcgg
ggaaaggagaaaaatggATGACAGGTGCGCGAttgggtggaagggagaag
gaagggaagggggggaagggagggggctaGAGTCAGATACAGAGGGTGGA
CGAATGCGGGCGTGTAtagcaggagggaggtgcaAATTCAAGGGAAACCG
CCAAGAAGGACAAAAATGCGATTTGAAAAAGCTTTCGACGGAGTGATGTT
CCAAGAATTATCCGAAGGGCGATGGCAAAAGGGTAGTGGGCCGTCAGGCA
GGGCACGTCCTAGTATGCCTATGTGCTTTCACCCACCAGACTCCcagcct
tcccccttcttgtcACGCATTGCAAACCTCCCCTTGTAGCCtgtgcctcc
cccccccctttttcgaGATGATTGTGCAAAAAGCTTCCTCACCACGTGCC
TGGCCCCAtggtccctcccttccggtTTTCTCCCCCGTATTTTTCCTGCA
ATTCTCT

Coding sequence (CDS) from alignment at CM002468.1:793283..795139+

>rna6558 ID=rna6558|Name=rna6558|organism=Nannochloropsis gaditana|type=CDS|length=1956bp|location=Sequence derived from alignment at CM002468.1:793283..795139+ (Nannochloropsis gaditana)
ATGACTGTAAAAGAGGACCGAGACATCTTCGAACAGAAGCTCCAGGTAGA
GGCGAAGGCAAGTAAAGAACAGATTCCGGACAAAGAAGCAGCCTGGGAAG
CCGAGCGCAAGAAAGCGAAGCCTGATTTGAACGTCAAATTCATCTATGCC
TACGTCTTGACCATGTCCAACTCGGAACGGCACAAATCCATGGGCATGCG
GTTGCTGAacgAGCTGATTGCGGCCCGTTTCAACGTGGAGGAATGCCTGT
ATGCGTTGGCGGTGTGTTTGTACAGCCAAACGGAATGGCGGGAGTGTAGG
GAGGTAGTGGACCGTCTCCTGCGCCTCAACCCCGACCATCGTTACGGCAA
CGAACTCCACCTCTTTGTCAAGGACGCgcaagCCAAGCAAGATTTGGCGA
TAGGCGTGGGGGTCGGGGTGGGGGTCATCGGTGCCACTGCCGCGATTCTA
CTTGGGGCGATGCTGGGAAGCGGACGTCGTGGACGGTGAATGACTGTAAA
AGAGGACCGAGACATCTTCGAACAGAAGCTCCAGGTAGAGGCGAAGGCAA
GTAAAGAACAGATTCCGGACAAAGAAGCAGCCTGGGAAGCCGAGCGCAAG
AAAGCGAAGCCTGATTTGAACGTCAAATTCATCTATGCCTACGTCTTGAC
CATGTCCAACTCGGAACGGCACAAATCCATGGGCATGCGGTTGCTGAacg
AGCTGATTGCGGCCCGTTTCAACGTGGAGGAATGCCTGTATGCGTTGGCG
GTGTGTTTGTACAGCCAAACGGAATGGCGGGAGTGTAGGGAGGTAGTGGA
CCGTCTCCTGCGCCTCAACCCCGACCATCGTTACGGCAACGAACTCCACC
TCTTTGTCAAGGACGCgcaagCCAAGCAAGATTTGGCGATAGGCGTGGGG
GTCGGGGTGGGGGTCATCGGTGCCACTGCCGCGATTCTACTTGGGGCGAT
GCTGGGAAGCGGACGTCGTGGACGGTGAATGACTGTAAAAGAGGACCGAG
ACATCTTCGAACAGAAGCTCCAGGTAGAGGCGAAGGCAAGTAAAGAACAG
ATTCCGGACAAAGAAGCAGCCTGGGAAGCCGAGCGCAAGAAAGCGAAGCC
TGATTTGAACGTCAAATTCATCTATGCCTACGTCTTGACCATGTCCAACT
CGGAACGGCACAAATCCATGGGCATGCGGTTGCTGAacgAGCTGATTGCG
GCCCGTTTCAACGTGGAGGAATGCCTGTATGCGTTGGCGGTGTGTTTGTA
CAGCCAAACGGAATGGCGGGAGTGTAGGGAGGTAGTGGACCGTCTCCTGC
GCCTCAACCCCGACCATCGTTACGGCAACGAACTCCACCTCTTTGTCAAG
GACGCgcaagCCAAGCAAGATTTGGCGATAGGCGTGGGGGTCGGGGTGGG
GGTCATCGGTGCCACTGCCGCGATTCTACTTGGGGCGATGCTGGGAAGCG
GACGTCGTGGACGGTGAATGACTGTAAAAGAGGACCGAGACATCTTCGAA
CAGAAGCTCCAGGTAGAGGCGAAGGCAAGTAAAGAACAGATTCCGGACAA
AGAAGCAGCCTGGGAAGCCGAGCGCAAGAAAGCGAAGCCTGATTTGAACG
TCAAATTCATCTATGCCTACGTCTTGACCATGTCCAACTCGGAACGGCAC
AAATCCATGGGCATGCGGTTGCTGAacgAGCTGATTGCGGCCCGTTTCAA
CGTGGAGGAATGCCTGTATGCGTTGGCGGTGTGTTTGTACAGCCAAACGG
AATGGCGGGAGTGTAGGGAGGTAGTGGACCGTCTCCTGCGCCTCAACCCC
GACCATCGTTACGGCAACGAACTCCACCTCTTTGTCAAGGACGCgcaagC
CAAGCAAGATTTGGCGATAGGCGTGGGGGTCGGGGTGGGGGTCATCGGTG
CCACTGCCGCGATTCTACTTGGGGCGATGCTGGGAAGCGGACGTCGTGGA
CGGTGA

Synonyms

Publications