EWM24161.1, cds6508 (CDS) Nannochloropsis gaditana

Overview
NameEWM24161.1
Unique Namecds6508
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:720782..721094 -
Alignment locationCM002468.1:720517..720572 -
Alignment locationCM002468.1:720201..720299 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24161.1
Productglutaredoxin-like protein
Orig transcript idgnl|cribi|Naga_100532g3.2617.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:720782..721094 -
CM002468.1supercontigCM002468.1:720517..720572 -
CM002468.1supercontigCM002468.1:720201..720299 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR004480Monothiol_GRX-rel
IPR002109Glutaredoxin
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|585105532|gb|EWM24161.1| (glutaredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 315.079 bits (806), Expect = 9.483e-109
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 MRVLFFTCTLLLSLQSILGFLIPPAPSPRPRISSSFPLRSSMAPGDEAAERSAAVEKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLAELKK 155
            MRVLFFTCTLLLSLQSILGFLIPPAPSPRPRISSSFPLRSSMAPGDEAAERSAAVEKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLAELKK
Sbjct:    1 MRVLFFTCTLLLSLQSILGFLIPPAPSPRPRISSSFPLRSSMAPGDEAAERSAAVEKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLAELKK 155          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|504936846|ref|WP_015123948.1| (glutaredoxin [Synechococcus sp. PCC 6312] >gi|427376452|gb|AFY60404.1| monothiol glutaredoxin, Grx4 family [Synechococcus sp. PCC 6312])

HSP 1 Score: 148.673 bits (374), Expect = 1.041e-43
Identity = 69/101 (68.32%), Postives = 86/101 (85.15%), Query Frame = 0
Query:   52 SAAVE-KIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLA 151
            SA V+ KI SLV +NK+M+FMKGSKL PQCGFSNTAV IL +  A FETFDVL+DY VR+ IK+YS+WPTIPQ Y+NGEFVGGSDIL+E+++ GEL++ +A
Sbjct:    2 SADVQAKIDSLVKSNKIMVFMKGSKLMPQCGFSNTAVQILNSLGAPFETFDVLADYEVRQGIKDYSNWPTIPQIYINGEFVGGSDILIELYQKGELQEMVA 102          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|551550939|ref|XP_005762961.1| (hypothetical protein EMIHUDRAFT_78687 [Emiliania huxleyi CCMP1516] >gi|551624821|ref|XP_005792613.1| glutaredoxin [Emiliania huxleyi CCMP1516] >gi|485612147|gb|EOD10532.1| hypothetical protein EMIHUDRAFT_78687 [Emiliania huxleyi CCMP1516] >gi|485646828|gb|EOD40184.1| glutaredoxin [Emiliania huxleyi CCMP1516])

HSP 1 Score: 142.124 bits (357), Expect = 4.091e-41
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 0
Query:   56 EKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGEL 146
            ++IK++V  NK+ LFMKGSKLFPQCGFSNTAV IL + + E+ETFDVL+D  VR+ +K YS+WPTIPQCY+ GEFVGG D+L+EM++SGEL
Sbjct:    6 DRIKAMVEGNKIFLFMKGSKLFPQCGFSNTAVQILNSYNVEYETFDVLADNAVRDGVKTYSNWPTIPQCYIEGEFVGGCDLLIEMYQSGEL 96          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|1210260279|dbj|BAZ79274.1| (glutaredoxin-like protein [Sphaerospermopsis kisseleviana NIES-73])

HSP 1 Score: 142.124 bits (357), Expect = 4.757e-41
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 0
Query:   56 EKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTL 150
            EKI +L+ NNK+M+FMKG+KL PQCGFSN AV I  A    FETFDVLSDY VR+ IK YS WPTIPQ Y+NGEF+GGSDIL EM++ GEL++ +
Sbjct:    7 EKIDNLIKNNKIMVFMKGTKLMPQCGFSNNAVQIFNALGVPFETFDVLSDYEVRQGIKEYSEWPTIPQIYINGEFLGGSDILYEMYQKGELQEKV 101          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|822632383|ref|WP_047006252.1| (monothiol glutaredoxin, Grx4 family [Erythrobacter gangjinensis] >gi|822588049|gb|KLE33404.1| glutaredoxin [Erythrobacter gangjinensis] >gi|1108535299|gb|APE26951.1| putative monothiol glutaredoxin ycf64-like [Erythrobacter gangjinensis])

HSP 1 Score: 140.584 bits (353), Expect = 2.030e-40
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 0
Query:   56 EKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLAE 152
            E+I  +VG+N V+LFMKG+ LFPQCGFSN AVSIL  C  +FE+ DVL D  VR+ IK YS WPTIPQ YV GEFVGGSDI++EM+E+GEL++ L E
Sbjct:   10 ERISQIVGDNDVVLFMKGTPLFPQCGFSNRAVSILDHCKVQFESVDVLQDMEVRQGIKAYSDWPTIPQLYVKGEFVGGSDIMMEMYEAGELQQMLDE 106          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|676378199|ref|XP_009032378.1| (hypothetical protein AURANDRAFT_18629 [Aureococcus anophagefferens] >gi|323456862|gb|EGB12728.1| hypothetical protein AURANDRAFT_18629 [Aureococcus anophagefferens])

HSP 1 Score: 141.739 bits (356), Expect = 2.397e-40
Identity = 70/131 (53.44%), Postives = 89/131 (67.94%), Query Frame = 0
Query:   20 FLIPPAPSPRPRISSSFPLRSSMAPGDEAAERSAAVEKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTL 150
            F+ P A +PR        L    A  D      A  ++I+S+V +N VMLFMKG+K+FPQCGFSN AV IL A   +FET+D LSD  VR  IK +S WPTIPQ YV+GEFVGGSDI+LEM+E+GEL++ +
Sbjct:   18 FVAPGAAAPR--------LSPRRAGDDVEPPPDATTKRIQSMVDDNTVMLFMKGTKIFPQCGFSNMAVQILNAIGQDFETYDCLSDENVRSTIKEFSDWPTIPQLYVDGEFVGGSDIMLEMYEAGELQEMI 140          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|502956678|ref|WP_013191654.1| (glutaredoxin [Trichormus azollae] >gi|298233502|gb|ADI64638.1| glutaredoxin-like protein ['Nostoc azollae' 0708])

HSP 1 Score: 140.198 bits (352), Expect = 3.119e-40
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 0
Query:   56 EKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTL 150
            EKI +LV  NK+M+FMKG+KL PQCGFSN  V IL      FETFDVLSD  +R+ IK YS WPTIPQ Y+NGEFVGGSDIL+EM++ GEL++T+
Sbjct:    7 EKIDNLVQQNKIMVFMKGNKLMPQCGFSNNVVQILNTLGVPFETFDVLSDSEIRQGIKEYSEWPTIPQVYINGEFVGGSDILIEMYQKGELQQTV 101          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|748154451|ref|WP_039728777.1| (monothiol glutaredoxin, Grx4 family [Lyngbya confervoides] >gi|746958800|gb|KIF16339.1| glutaredoxin [Aphanocapsa montana BDHKU210001] >gi|746985571|gb|KIF41263.1| glutaredoxin [Lyngbya confervoides BDU141951])

HSP 1 Score: 139.813 bits (351), Expect = 3.294e-40
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 0
Query:   56 EKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTL 150
            E+I++L+ +NK+M+FMKG+KL PQCGFSN  V IL      FETFDVLSDY VR+ IK YS+WPTIPQ Y+NGEF+GGSDIL+E++++G+L++T+
Sbjct:    7 ERIETLINDNKIMVFMKGNKLMPQCGFSNNVVQILNVLGVPFETFDVLSDYDVRQGIKEYSNWPTIPQVYLNGEFLGGSDILIELYQNGQLQETV 101          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|1194459177|gb|OUC12816.1| (monothiol glutaredoxin, Grx4 family [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 138.272 bits (347), Expect = 1.643e-39
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = 0
Query:   56 EKIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTL 150
            ++I  LV N+K+M+FMKG+KL PQCGFSN  V IL      FETFDVLSDY +R+ IK+YS+WPTIPQ Y+NGEF+GGSDI++E+++ GEL++ +
Sbjct:    7 QRIDDLVNNHKIMVFMKGNKLMPQCGFSNNVVQILNVLGVPFETFDVLSDYEIRQGIKDYSNWPTIPQVYMNGEFIGGSDIMIELYQKGELQQMV 101          
BLAST of EWM24161.1 vs. NCBI_GenBank
Match: gi|1100946051|ref|WP_071455475.1| (monothiol glutaredoxin, Grx4 family [Gloeomargarita lithophora] >gi|1100594552|gb|APB35138.1| Glutaredoxin-related protein [Gloeomargarita lithophora Alchichica-D10])

HSP 1 Score: 138.272 bits (347), Expect = 1.716e-39
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 0
Query:   57 KIKSLVGNNKVMLFMKGSKLFPQCGFSNTAVSILRACDAEFETFDVLSDYLVREEIKNYSSWPTIPQCYVNGEFVGGSDILLEMFESGELEKTLA 151
            +I  LV  +K+M+FMKGSKL PQCGFSN  V IL A  A +ET DVLSDY +R+ IK YS WPTIPQ Y+NGEF+GGSDIL+EM++SGEL++ +A
Sbjct:    8 RISELVKAHKIMVFMKGSKLMPQCGFSNNVVQILNAVGAVYETCDVLSDYEIRQGIKEYSQWPTIPQVYINGEFLGGSDILIEMYQSGELQEKVA 102          
The following BLAST results are available for this feature:
BLAST of EWM24161.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105532|gb|EWM24161.1|9.483e-109100.00glutaredoxin-like protein [Nannochloropsis gaditan... [more]
gi|504936846|ref|WP_015123948.1|1.041e-4368.32glutaredoxin [Synechococcus sp. PCC 6312] >gi|4273... [more]
gi|551550939|ref|XP_005762961.1|4.091e-4167.03hypothetical protein EMIHUDRAFT_78687 [Emiliania h... [more]
gi|1210260279|dbj|BAZ79274.1|4.757e-4166.32glutaredoxin-like protein [Sphaerospermopsis kisse... [more]
gi|822632383|ref|WP_047006252.1|2.030e-4064.95monothiol glutaredoxin, Grx4 family [Erythrobacter... [more]
gi|676378199|ref|XP_009032378.1|2.397e-4053.44hypothetical protein AURANDRAFT_18629 [Aureococcus... [more]
gi|502956678|ref|WP_013191654.1|3.119e-4065.26glutaredoxin [Trichormus azollae] >gi|298233502|gb... [more]
gi|748154451|ref|WP_039728777.1|3.294e-4062.11monothiol glutaredoxin, Grx4 family [Lyngbya confe... [more]
gi|1194459177|gb|OUC12816.1|1.643e-3960.00monothiol glutaredoxin, Grx4 family [Alkalinema sp... [more]
gi|1100946051|ref|WP_071455475.1|1.716e-3964.21monothiol glutaredoxin, Grx4 family [Gloeomargarit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6524rna6524Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications