rna6489, rna6489 (mRNA) Nannochloropsis gaditana

Overview
Namerna6489
Unique Namerna6489
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1710
Alignment locationCM002468.1:624253..625621 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100253g3.9430.mrna
Orig protein idgnl|cribi|Naga_100253g3.9430
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:624253..625621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100253g3gene6269Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6489rna6489-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24199.1cds6473Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6489 ID=rna6489|Name=rna6489|organism=Nannochloropsis gaditana|type=mRNA|length=1710bp
AGAAAGGATTGAGACGGGGTGAGAATTTGCCGCCGAGACCAAAGATCGAC
CATACCGGCGAGCTCTTATTTACTAATGCATAAGTCACAACGGACAATTG
AAAGGGCTCATCACGGAGCTAGAGCAACGACAGGAGGTCATTTTACTGCA
CATTCATCGTTTGAAAGGCTTGTCCGACGTATAAGGATCCATCAAATGAT
AATTTGCCCTGGGAATCTCGGTCTCGCCTACCCCCCTTAGCGCGTAACCT
AATACTTTTGACACTTTTGTACAGGCATTCATCGACGACAATTAATTATT
GCACAACGTGAAATATTAAGAAATTTGAGTGTCCTTCTGATTTACGGGGT
TCTACCGTGGTATAGGTCCCGTGATCTTCTAATTGGGGCAGCCACATGGT
CCTCCGCAGGCCTGAGAAAGAGGCTGGAGGGAGTCACCACCCTCTGGCCC
GTTTCATGGGTTCGAGTAGCAGCGCGCTCTTTGAGCTTGTCATCTTTCAG
CCTCTGGATACATGCTGTAAACGGATCATTACTCATCAGGGCCGGCTTTT
GACAGCAGAAGGCTTGTCTCTGACAGCCAAGTACGGGAAAATTCGAAGCG
TCGTTTTTCGAGAAAAGCTCCATTCCGGCCCCATCGATAAGCTCCGCTCC
TTGTACGCAGGCCTCAAATTCGGCGCCTATTACAAAATTTGCCAGCGTAC
CGCGGCCTACGGATTACAGCCCTTCGTTTTCGATTACATCCACGCCTACC
ACCACGAGGGCTTCGTCTCGCTGATCGGAAGCAAGAGGGCGCGAGCCTTG
GAATTCGCCACTGCCGCTGCCGTCATGGGCACGGCGGAAGTCATCTTCAT
CCCCCTGGACACTCTTAAAATCCTTAGCCAAACCAATCCTGCTTCCCTTC
GGAGCCGTTCTTTCCTCCAGCTTGTGCGTCAGGAAGGCTTTCGCCTCTAC
CGGGGGGCTTCTTGGACCGTGCTTCGGAATTTTCCTGGCTCTTTCGCCCT
GTTTGGGGGCTCAGCCCTCGTCAAGGAGAAAGTCTTCCACCTTGATCAAT
ACAAGGACGCTACCCTGCTTCAGGAACTCCTGGCTAGCTGCACGGGAGCG
GTATGGTCCCTGACCCTGTCCTCGCCCGCCGACGTCATCAAAGCCCGCGT
CCAGAGGGCCTGTTTATCGCCCAGCCACGAAGGGATTCAGACGAAGGGAA
GAGAGATCTTGAGGGAGATGCTCAAGAAGGAGGGCCCCTGGGCGTTGTTT
AAAGGCTTGAATACGAAATTTATGGTGGTGTGCCCAAAGCTGGTGCTCTC
CTTCACGGTTTACAATCAGGTCATGAGCTGGTTGGACGCGGTCCTTGAGG
CCAGGGGGCAATGAATGGTAACGCCAGTGCGTTGGAAAAGTGACGACGGA
CAAAAGCCTCGTCCCATGCTTCCCACAGGAGACGATGGCGCGGTGGCAGG
ACCACTGGTCGGCCCCGAGGGCTTAATGGAGGGGGGGGAAGATGAGCTCA
CGAAGGGCCGAGCGGCTCTATTTGACTGAACGATCGACCGCAGTGCGGTC
TGTAAAAATCTCTTGACGGTATCGACAGAAACATGTCAACAAGTAGGGGA
GGGGCCGACGATAGAGTCGCGGAAACGACCAGACGCAGACTCTTTGCATC
GCAAAGCTGAAATTCTTTTGTGTAAAATCAGTGCTCGGATAAATTGTGAT
TAGAGGCTAT
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protein sequence of rna6489

>rna6489-protein ID=rna6489-protein|Name=rna6489|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
MQTIRSRLNAHLPVLHIHSAFVRSKIVPQILQNQDSPQATGKKGRRISNL
QRFMGGPSSSTPSCLVGIGPAASFSVDAHENVYSHSVRASSKVSIPVLSK
MSKMGENSSVVRGK
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mRNA from alignment at CM002468.1:624253..625621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6489 ID=rna6489|Name=rna6489|organism=Nannochloropsis gaditana|type=mRNA|length=1369bp|location=Sequence derived from alignment at CM002468.1:624253..625621+ (Nannochloropsis gaditana)
TAAAATGACCTCCTGTCGTTGCTCTAGCTCCGTGATGAGCCCTTTCAATT
GTCCGTTGTGACTTATGCATTAGTAAATAAGAGCTCGCCGGTATGGTCGA
TCTTTGGTCTCGGCGGCAAATTCTCACCCCGTCTCAATCCTTTCTTTGAG
CGACGCCACGGTATGAAGGCCTTCGCAGACATACAGGATGCCAAATGTAT
CACGCTCCGCGAGGTTGCCCTGCCTTTTCGTGTAAATGCTTCACGGGCAC
TAAAATGCTTTTTAGTTCCAGCTGGCAAGTGTGAAGTGACATATCCTAGG
GCAGGGGTGGATGCAGACGATCAGATCGAGGTTGAATGCACATCTGCCCG
TCTTGCACATACATTCTGCCTTTGTTCGATCCAAAATTGTCCCCCAAATA
CTACAAAATCAGGACAGTCCACAGGCTACAGGGAAGAAGGGTAGACGCAT
TTCAAACCTCCAAAGGTTTATGGGAGGCCCCTCCTCATCGACGCCCTCGT
GCCTCGTTGGCATTGGCCCCGCCGCCTCATTTTCAGTCGATGCACATGAA
AACGTGTATTCACATTCGGTACGTGCCTCAAGCAAAGTCTCTATACCTGT
GTTGTCAAAGATGAGTAAGATGGGTGAGAACTCGAGCGTTGTCCGTGGTA
AATGAACCACCTCGAAGCTTTCTCAAAATTATGCTCATATCCACTTACAC
TTCGTGACCCCGTGGATTGTGCCAATTTCAGCTCATTCCTCGCGTGCTTG
TGCGTTTTGAAACAATTGACCCGCCATCGgctgcctcttccagctCAATA
AATGTCGTCAAGGATGCATACTATACGTCGCTATATTGATGAAGTCCGTG
AAAACAAACATCGAACTCAAACAAAAAGCAACACCAGACTGAAGACGACG
TAGAAGCAGAGGCAGATCGACTGTGTGGGCTCGTACGACATGCCCTGATT
CTCATATCTGTGGTTTCtcgtctcccttctcctcctccatccgcgcAGGG
CGTAAGAGTCACGTAGCGGGGACTGTGTATGCAAACTTACGGGCGGGAAC
TTTGATTCAAGGCTCCATATCGCTTTCTTTATGTGGAATTTAAAGTGATG
GACAGGTCTAAAGAGAGGCTTTCGTGACGAAAGTGAATGGGATCGAGAAA
GTAAAAGCGGCGTAACGGCGTTCCAGAAGCTCTGCGAAGAAGGCTGTACA
GAGGCATGAGGTGATGTAAAACGATATATAAAGTCCCCGCGATGTTCGAG
CGAGTCTTTGCTTCAATGTATAAGAAAAAAATTGTGGCAAgtcatcctct
ttctcggTGCTGTGCCCTCTTACTTTGCTTGTCGAATCGATTTCCAACAC
GGAAACTAACGCCCTActc
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Coding sequence (CDS) from alignment at CM002468.1:624253..625621+

>rna6489 ID=rna6489|Name=rna6489|organism=Nannochloropsis gaditana|type=CDS|length=345bp|location=Sequence derived from alignment at CM002468.1:624253..625621+ (Nannochloropsis gaditana)
ATGCAGACGATCAGATCGAGGTTGAATGCACATCTGCCCGTCTTGCACAT
ACATTCTGCCTTTGTTCGATCCAAAATTGTCCCCCAAATACTACAAAATC
AGGACAGTCCACAGGCTACAGGGAAGAAGGGTAGACGCATTTCAAACCTC
CAAAGGTTTATGGGAGGCCCCTCCTCATCGACGCCCTCGTGCCTCGTTGG
CATTGGCCCCGCCGCCTCATTTTCAGTCGATGCACATGAAAACGTGTATT
CACATTCGGTACGTGCCTCAAGCAAAGTCTCTATACCTGTGTTGTCAAAG
ATGAGTAAGATGGGTGAGAACTCGAGCGTTGTCCGTGGTAAATGA
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Synonyms
Publications