rna6487, rna6487 (mRNA) Nannochloropsis gaditana

Overview
Namerna6487
Unique Namerna6487
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2385
Alignment locationCM002468.1:621397..622443 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100253g1.9429.mrna
Orig protein idgnl|cribi|Naga_100253g1.9429
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:621397..622443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100253g1gene6267Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6487rna6487-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24198.1cds6471Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6487 ID=rna6487|Name=rna6487|organism=Nannochloropsis gaditana|type=mRNA|length=2385bp
ATGGGGGACCGGCGGGCTAGCACATCAAGTGACCTAGGTGAAGGCGCAGA
GGAGGAAGACCACATTCGTGTCATCTGCAGGGTGCGCCCCCCACAAATCC
GTGAGGGACGGAGCAGTGCCCTTGGTCTCCGCACATGCGTCACAGTAGGT
GAAACGAGGAAGACTGTCACACTTAAGCAAGCTTCGGGGCCAAAAATTTT
CACTTTTGATCATGCTGTGGGTGACGACGCTTCGCAGGAGTCGGTCTTTC
AGCTTGCAGGAAAACCAGCCACCAAAGCTTGCATTTTGGGCTACAATGGC
ACTGTGTTCTGCTACGGACAGACAGGATCGGGGAAGACCTATACCATGTT
TGGTCCCAATGTGGACGCCTGTGGAAGCGACGATGAGCATCGTGGTCTGG
TTCCTCGTGTACTTGAGTATCTCTTCGCCCATGTGGCGCGAGAGGAGAGG
CGGAACGGGGGCGCCATCACTTACCTGTGCCGGTGCTCTTTCTACGAGAT
TTTCAATGAAAGGGTTTTCGATCTGCTAGATTCGGACTCTGGATGTTCCG
TTGGAGGGCTGCAGACCCGGGAGGATATGAAGAAAGGCGTGTATGTGGAG
GGGCTGACGGAGGAGGCAGTGGACTCGCCCTACCAGGCTCACCAAGTCTT
GACTCGCGGATATCGCAACCGACACGTGGGCGAGACTGCCATGAATCGAG
AGAGCTCCCGGTCTCACGCCGTCTTCACGGTCGTGTTGGAGTCCCGGGAG
GTGGACACCATGGACGGGATTACCCGCGCTCGATGCGCGTCATTCAACTT
GGTGGATCTGGCAGGCTCGGAGCGGCAAGGACAGACGGGTGCCACGGGCG
AGCGGCTGAAGGAAGCAAGCAGCATCAACAAGTCCCTCTCGGCGCTTGGC
AACGTGATCAACGCGCTTGTCTCGGGCCGCACCCGTTATGTTCCCTACAG
AGACTCGCGCTTGACGTTCCTCCTCAGGGACTCCCTCGGCGGGAACGCGA
AGACATTCTTGGTCGCCTGCACCTCTCCCAACGATGAAAACTTTGCCGAG
ACGCTCTCCACGCTCAAGTTTGCCCAACGGGCGAAGATGATCAAAAACAA
GGCGGTCGTCAACGAGAACACGAGTGGAACCGTCGAGGCCTTGCAGAAGC
AGCTCCGCACCCTGCGACAAGAGCTTCTGGCAGCACGCGCTGTTGTGCAG
GCTTCGGGGGCAGCGCTTCCTCCTCCCTCCAACGATGAGATACCGGGAGC
ACCCGCAACGCTCACGGCCTTGCGCCGGACGGAGGAACTCTTGCGGGAAG
CCTTGGAGCGTAATTTACACATGGAACAGGCGCGTGATTTGGCCGAGAAA
ATGGCAGGAAATGTGCAAGCTACTGTCGATCGTCTGGAGCAGAGCCTGCT
GCACGAGCGGATGGTCCGCAAGATGAAGGAGTCGCACATCAGTCGCCACT
TGAAGAGGGCGGCTGACAAGGGCGGGGCGGAGAGTAAGACGGTGGAAGAG
GACCTCCGCCTGGAGATAGAAACCTTGCGGAAGGAAATGAGCCAGGTGCC
TGTGGAGGCGATCAAATGGAGGGCTGCCGCCGAAAATGCGCAGGCCCAGT
TGGACGCCTTGCTGGACGAGAAAGAGGGATTGGGCATGTGGGTCGATGAC
AGGGAGAAGACCTTCGCGACAGCGTTGGAGGAGCGACTGAGAGCGACCTT
GGTGGAAAAAGCGGAGTTGGAAGCTCGTGTCTTTGGCGGGACGGCAGGCG
GGGAAGGAGAGCCAGGGAAAGGGCAGAAGAGGTTAAGCGACGGTGGGATG
AACCGGCTGAGGGAGGCGGAGATGAGCACAGTGCGGTTGGAGGAGGAGTT
GACCGCGGCGACACGACAGGCGGAGGACTGCGAGGCAGAGTTGGCGGAGG
TCCGAGCCCGGGCCGCGCAGGCAGTGAGCGCACAGTCCCAGATCCAAGTG
CAACTCACCCACGCAGAGCGACGGTTGGAGGCCTTGGAGGGCGAGAATAA
AGTCTTGAAGGCGGACAGGGACTTCAACATGGCCCTGCTCCAGGAGCGCA
TCGAGGACACGCAGAGCCAGGCCCAGGCGGCCAAGCAGGACGTGGAAGCT
CAGCTGGCTGCGGCCTGCAAGGACAACGCCATCCTCTTGCAGCGCTTGAA
GAAGACGGCAGAGGAAGCCGAGAACCTGGGCGCCCTGCAGGAAGCGGCAG
AGAAGCAAGTCCAGACTCTCCGGGACGAGATCGAAGCGGACCTGAGACCG
CGCCTGCTAAGGCTGGAGGCCGAGCTCGAGGAGCGGGAGAAAGACCTCGC
GGACTCCCAGGAACGTCCTTGCGAGCGGAGAAGGACGAGGGGGCCTTGCA
GTTGGCGAACCTGCAGGAGGAGCACGACACCTTGA
back to top

protein sequence of rna6487

>rna6487-protein ID=rna6487-protein|Name=rna6487|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MGEEMMAYLDEITMLKTRLQEGERVHADRTRELEAAWKAAEKESGARAAR
VAVLANEVQGIQERLDQQQAADYDAKAMMQAELTRQLQEAEWKHTKAMAD
LQQELAEAAARGAEAARFKAALGSSQSQVEALRESLVESKAALEAASVKG
NAAEERSRSLAHQLGEALARERDAENWREEKARWELEMARAREMEKEAYE
RCETAEQEKASLGKSVEALEAEVEELKSVNVRLVGHANSRQKIQLHSKLK
EELTELSRKYKMLEEENYSLKVMMGPTEGENGDTKGGSLSLRRKGKSTPA
APMDAAEPAALSNVTNTSGRRPTRRTVTKKKGMGLEALAAEGPEATET
back to top

mRNA from alignment at CM002468.1:621397..622443+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6487 ID=rna6487|Name=rna6487|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp|location=Sequence derived from alignment at CM002468.1:621397..622443+ (Nannochloropsis gaditana)
atgggggaggaaatgatggcGTATCTGGACGAGATCACCATGCTCAAGAC
TCGActccaggagggagagcgggttCACGCGGACCGGAcgcgggagctgg
aggcagcATGGAAAGCCGCCGAGAAGGAGTCGGGGGCACGGGCCGCGCGT
GTGGCGGTCCTCGCGAATGAGGTGCAAGGGATACAGGAGCGGCTTGACCA
GCAGCAGGCGGCGGACTACGACGCCAAAGCCATGATGCAAGCCGAGCTGA
CCCGTCAACTGCAGGAGGCAGAGTGGAAGCACACCAAGGCGATGGCAGAC
CTCCAGCAGGAGCTGGCCGAAGCAGCTGCGCGTGGGGCAGAAGCTGCTCG
TTTCAAGGCCGCGTTAGGCAGCAGTCAGTCCCAAGTGGAGGCTTTGCGGG
AGTCGCTGGTCGAGTCGAAAGCGGCGTTGGAGGCCGCAAGCGTCAAGGGA
AAtgcggcggaagagaggTCTCGGTCACTGGCCCACCAATTGggcgaggc
cctggcgcggGAGAGAGACGCGGAGAACTGGcgcgaggagaaggcccgGT
GGGAGTTGGAAATGGCGCGCGCCagagagatggagaaggaggcttaCGAG
CGGTGCGAGACggcggagcaggagaaggctaGCTTGGGCAAAAgcgtgga
ggcgttggaagcagaggtggaggaactAAAGTCGGTGAACGTCCGATTGG
TGGGGCATGCCAACAGCCGGCAGAAGATCCAACTGCACAGCaagctgaag
gaggagctcaCGGAGTTGAGTCGTAAATATAAGAtgctcgaggaagagaa
cTATTCGTTGAAGGTGATGATGGGCCCAACGGAAGGGGAGAATGGAGATA
CGAAGGGCGGCAGCCTAAGCCtacggaggaaaggaaagtcGACGCCGGCT
GCTCCAATGGACGCCGCGGAGCCAGCCGCCCTGAGCAACGTGACGAATAC
GAGCGGTAGGCGCCCGACCCGGCGGACGGtaacgaagaagaagggcatgg
gcctggaggccttggcggcggagggaccTGAGGCGACGGAGACGTGA
back to top

Coding sequence (CDS) from alignment at CM002468.1:621397..622443+

>rna6487 ID=rna6487|Name=rna6487|organism=Nannochloropsis gaditana|type=CDS|length=1047bp|location=Sequence derived from alignment at CM002468.1:621397..622443+ (Nannochloropsis gaditana)
atgggggaggaaatgatggcGTATCTGGACGAGATCACCATGCTCAAGAC
TCGActccaggagggagagcgggttCACGCGGACCGGAcgcgggagctgg
aggcagcATGGAAAGCCGCCGAGAAGGAGTCGGGGGCACGGGCCGCGCGT
GTGGCGGTCCTCGCGAATGAGGTGCAAGGGATACAGGAGCGGCTTGACCA
GCAGCAGGCGGCGGACTACGACGCCAAAGCCATGATGCAAGCCGAGCTGA
CCCGTCAACTGCAGGAGGCAGAGTGGAAGCACACCAAGGCGATGGCAGAC
CTCCAGCAGGAGCTGGCCGAAGCAGCTGCGCGTGGGGCAGAAGCTGCTCG
TTTCAAGGCCGCGTTAGGCAGCAGTCAGTCCCAAGTGGAGGCTTTGCGGG
AGTCGCTGGTCGAGTCGAAAGCGGCGTTGGAGGCCGCAAGCGTCAAGGGA
AAtgcggcggaagagaggTCTCGGTCACTGGCCCACCAATTGggcgaggc
cctggcgcggGAGAGAGACGCGGAGAACTGGcgcgaggagaaggcccgGT
GGGAGTTGGAAATGGCGCGCGCCagagagatggagaaggaggcttaCGAG
CGGTGCGAGACggcggagcaggagaaggctaGCTTGGGCAAAAgcgtgga
ggcgttggaagcagaggtggaggaactAAAGTCGGTGAACGTCCGATTGG
TGGGGCATGCCAACAGCCGGCAGAAGATCCAACTGCACAGCaagctgaag
gaggagctcaCGGAGTTGAGTCGTAAATATAAGAtgctcgaggaagagaa
cTATTCGTTGAAGGTGATGATGGGCCCAACGGAAGGGGAGAATGGAGATA
CGAAGGGCGGCAGCCTAAGCCtacggaggaaaggaaagtcGACGCCGGCT
GCTCCAATGGACGCCGCGGAGCCAGCCGCCCTGAGCAACGTGACGAATAC
GAGCGGTAGGCGCCCGACCCGGCGGACGGtaacgaagaagaagggcatgg
gcctggaggccttggcggcggagggaccTGAGGCGACGGAGACGTGA
back to top
Synonyms
Publications