rna6458, rna6458 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6458
Unique Name	rna6458
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3608
Alignment location	CM002468.1:549950..551798 +

Link to JBrowse

Properties


Property Name	Value
Product	ctf2a like oxidoreductase
Orig transcript id	gnl\|cribi\|Naga_100020g19.5371.mrna
Orig protein id	gnl\|cribi\|Naga_100020g19.5371
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:549950..551798 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g19	gene6240	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6458	rna6458-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24238.1	cds6442	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:549950..551798+
coding sequence from alignment at CM002468.1:549950..551798+

mRNA sequence

>rna6458 ID=rna6458|Name=rna6458|organism=Nannochloropsis gaditana|type=mRNA|length=3608bp
AACGGGGCTTTGTTTCTTCTCTCGTTGGCCACACACGCGTCCAGGAATAG
TTTGACGTTGAGTGGAAATCTTTCGTGGTGCGATGGTTTGTGTACTGCGT
TGTAACCCTAGAACTGTATCGACAGCGTCCGACACTCTCCGTGCATCAGC
ATTTGATACATGACTCAATGAGAAAACGTGTTCCCCATGTTTTTTCACGA
ACATTATCTATCTATGGCAGGTCCATTCAGGCAATTCCATTACGTTGTAT
ACACGAGCAACTGTGAGCATCTGGCGTAGGCAAGTGACCTTTAACGCTGA
CAACATCTGCTCCTCGCAGCCTGCATTTCCAAATGGAGACACCACCGCAG
ACACTACCACCATCACCTCCTGGAAATCGGCATTCTCCGGAGCCAAGCAG
GCCACAGGCTACGTCGAGGATAAGAAGGCGTTCACACAGTATAAGTGGCT
GTGGAGGGGCGGTAATAGCGGAGTGGTGGCGACTTATGCTGCTGTCCTCT
TCGGCAGCAACCGCGGCTGCAGCTGCCACGGCGGCCTTTATCGGAAGCGG
GGGTGCCACCCCAACTTCCGTGGGCGGCGCCGTACCCACAGCGTGGTGGG
TATCCACTCAACAGCAACAACAGCTTAATCGCCAGTCGCAACTTCACAAT
TCGTGGTGTGCCGTCTCCAGTACGTCTCGTCTCGCAACCGCAACGGGAGG
ATGGGACTCATCAGCTGCTCCCCTGAGGGGTCGACGCGGGTGGGACGGCA
TGATGGGGGCACCGGATAAAGAGGAGGTTTTATTGCGGGCAGCATCTCCT
GTCAGGGGTATGTCCGAGAAGCCGCAGGCTCGGTGGCAAGGTGAGGGGCC
TGATGCTAGGGATGAGGAGGGGCAAGACAGAGCGGGCAACGCGGGCTCGT
CGTGGATGGAGGCATTGAGGTTGGAGAAAGGCGCCCTACGGCGGAATCAT
CGCTTTGAGGTGACCATACAAAAACCGCTGGGAATTTTCATGTCGGAAGG
GGAGGCAGACGTGGGCGCCCCCACCATTTCGGAGGTACGGCTAGGTAGCA
ACGCGGATAAGGCTGGTCTGCGCGTCGGGGACCGAATAGTGGCAGCCTCT
GCCACAGTGGGAAACAAGCTGTGGACCAAAACGACGCTGGTGGGTGTAGA
ATCAGCCATCAACTCGCGTTTCCGCTTTTCCGACGACATCACCTTCTGCG
TGGAAAGGACCCTGGCGCAGGACGCGGGCGACGACAGTATCGCGAGTCGG
CAAGTCGAGGTGTTCGAGGTAGAGTTGGAGAGGCCGGTGCCGTTGGAGTG
GATGCAAGAGAATGCAGAAGGCGGCGTCTTTGTTCGACGTGTGCTGAAAG
CGGACTGCGAGGCCCTGCGGCGCATCCAGCCGTACGATCGAGTCGTCGCC
GTCTCGGCGTCCCTGGGAGACCGCATGTGGCGGACGAACTCTCTGGACGG
TGTCCTCTCGGCGCTCTGCACCCGCATCGGCAGCAAGGTTCGCTTGCAGT
TCGAGCGCAGCCCAGAGGTCGCTCGTCTGATCGCGCGTGGTGCCGGCAAC
CCTGGTGTTGGGGTAGCTGATCTGGTACCACCGCTCCCTCCTCGCCCCTC
TATGGCCGCTGCCTCCTTGCTCTCCCCGCCATCCACGGCTGACCTGGTAG
CGAAGGGGGAAATGCTGCTCATGGGGGAACCACGCGTGCACGCCGTCCTG
TCCCAGATGGCCGGAGCCCTCCGAGCGCGAGACCCGGACCTTGCGATCTC
GATCTTTAAGTTGGCCGTGGAGCGGGGACTGACCCCGGACGCCCACTGCT
GCTCGTCATTGATCAAGGCGTATGGGATGAAGAAGCAGGCTGACAAGGCG
CTGGAGGTGGTGAGAATGATGCTGGAACTGGGGGTAGCTCCCGATCTGGT
GACGCTGAACGCTGCCATGGACGCCTGTGAGAAGGGAAAGCGGCCCGAGG
AGGTTCTCAGGCTCTTTCGGGAGGAAGTGCCCAGGCATGGACTGGTGCCT
GACATCTTCAGCTACACGGTGCTGGTGAACATGTATGGGAAGCGAGGGGA
GCTGGCTGAGGCCTTGGCGCTGTTTGAAGAGGCGGTCGCCTGCGGTTTAG
AGCCCGAGCTCCCTGCCTACACCGCCATCATCAAGGCGGCAGTGAAAAAA
GACGACATGGGGACTGCACTTGCCCTGCTGCGACGCGTATTTGACAGCGG
CTTGAGCCCGGACGCGCGTCTGTACAACACCCTGCTATGGGGTCACACGA
AGCGCCTGGAGTGGTCCAAGGCGATGCAGATTTTGAGGCTCATGGAGGCG
AAGGGCTTGGTGCCCGACCGGCTGACCTACAGCTACCTGCTCTCCTGTCT
CGTCGACTGCAACCAATTGGAGGTGGCACAATCTTTGTGGCGCGAGATGC
GGGACAAGGGCCACGTCAAGCCGAACCTGGAGTTGTACAGCCTGGCTGTC
GACATGTTCGCCAAAGCCGGAGATACTACTCAAGCCGTGACCATCTTCAA
AGAAATGCGCCGCAACCGTGTGCAGCCAAATCTTGTCACGTACACCGCCC
TCATGGAAGCCTTTGTCCGCGCAGGCTACCCCATGGCCGCTCTGTCCATC
TCCGACGAGATGCGGCGGAAGCCCGGCCTGGCCCGTGATGTGACGAGCTG
CGTATGGCGTCTCAAATGCTTCGTGGAACTAGGGGATCTGGAGGGAATCG
AAAACTTGATCCAGGAAATGCAAGACAGTGGCATTCATCTAAATGTGGTC
GTCTACAATCAATATCTGCGAGGCGCGATGCGAAGCGGGCGGTATGAGCT
TGCTCTGCAAATACTTTCCGCCCTATTTGAGAAGAGGCTCCTTCCAAACC
TGGAGACTCATCAATGCCTGCTCGAAATGCCCACTCCGAGTACCGGAGGA
GCAGTCAGCGGTCTCGCCCACGGTGATGGTGTCGAAAGTCAGATGGAGGA
GGCACGGGAGCAACTTGTCATGTTTTACCATGCGGCCTTGAAATTACTCG
CGGAACAGAAAGTTCGGGCTCGGGTTAACCTTTACGTGGCGTGTCTGCAT
GCCTGTTTGCGTACTGATCGACTTGATCTGGCAGCTGAAGTGATGGCATT
GCGGCGGGCCAACACTTTGCAGATCTTTCAGCTGTTCAAAAAGCACGAGG
AGAAGGTCCACAGGTGGGAACGGAAAATCGACCGGGAGCTGGACGCCCGG
TTTTATTCAAATAAGAACCTGGTGTAAAACATTGAGATTTCTCTTCTGGA
GGAAATTCTTTGGAGGAAATTCTTTCAGAGACATTTGAAAAAGAGAAGAC
ATGCAAGTGAATGAGGCTTGAAATTTAGGGAGTAAAGAAACCGACGATGA
AAAGCATTAATGCACGCTGTGGGGTCGAAGGAGGTAAGATTATCTGCAGG
GTCCAATAATTTGCTAGAAAGCTGCAGCGCAACCGCTGCAGGCCAACCGA
GACCACTTTCGATTCCATGTATGTTTGTTGGTGGTCGAGATGGTTCGTTA
TGCGACACGTGGCGAGAAGAAAGCTGCATGCTATAGATTAGGTCGAATTT
TTTTGTAAAATTAAGCTTGAGCTTTTTAAAAGATAAGCAAATGACAAGTA
TCAAACAC

protein sequence of rna6458

>rna6458-protein ID=rna6458-protein|Name=rna6458|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MDFLVTRSVLWTYGIAAMLIAIPQGHAFQMSHQMHRPSPRLMVTTKASVG
SKVDTDVLICGAGIAGLALAADLERRGVDYRLVERASSPREGGTAIGFWT
NAWRCLENLGVAGKLRKSNWEGDRLRIGTAMKGRELTSFDLGECDGGPHE
FRYVLRSDLLRQLLQIVPKQRVMYNKGLEGFGEDEVSGGILAEFSDGRRM
TSKALVGADGVGSTVHKLLFPGEKAANYAGYQAIRGVAKLPQGAKTSPYF
TFERGVINQVWGAGVRLGTFRMSETNLYWFVTYNGPQSGGESDDGAALLA
KARSVLDGWDERWGVSTILAATPPTDVLRTSIGDRWPKPQGNWGRGSVTL
LGDAAHPMTPNLGQGGAAGMEDALVLGEKLAATFKRGNPGPGEVSQALRT
FEKERGRRVSYLTLKSFVFGFLLQLPFAPVTFVRDNLALPLVFKPRSFLA
HTKFDPPLAPKPIRTTQPKKKTGIFYF

mRNA from alignment at CM002468.1:549950..551798+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6458 ID=rna6458|Name=rna6458|organism=Nannochloropsis gaditana|type=mRNA|length=1849bp|location=Sequence derived from alignment at CM002468.1:549950..551798+ (Nannochloropsis gaditana)
CAACagcggggaaaagggacaggaggaggacgaggaggacagtCATCACG
CTCAGTGAGCGTCGCTGAGTCCGTTTGGGCGCGACAGACACGCCCAGCGC
GGAGTCGGACTCCGACCTTGCCGTCAACTCGGGTTCAATGTCACCTCTTA
GCAAGCCTTGGAATTGGGTTTTGCACAACATAATGTCAAAAAATCATAGG
TGGATGTTTCACTGCCTACTAAAATTTGCTCATATTTCTGGaacgaaaaa
gaaggagactGGCACCTGCGACACAGTCAGCCGCGTTCCCGACAACAGCT
GACCGGTACTTCCTGGAAGGCGTAAACCGGGGATAATACGACGGCTTCAA
GCTAAAAGGAGGCGGTTCAATTTCTTCAGCATGGATTTTCTTGTGACAAG
ATCAGTCTTATGGACATATGGGATCGCGGCTATGCTCATAGCAATACCTC
AAGGGCATGCTTTCCAAATGTCGCATCAGATGCATAGGCCTTCCCCACGT
CTCATGGTGACGACAAAGGCATCAGTAGGCTCCAAGGTGGATACAGATGT
TTTGATTTGCGGGGCTGGTATTGCAGGATTGGCATTGGCGGCTGACCTAG
AGCGCCGTGGAGTTGATTATCGCTTGGTCGAGAGGGCAAGCTCTCCACGA
GAGGGCGGCACGGCCATCGGGTTCTGGACGAACGCGTGGCGATGCTTGGA
GAACCTCGGAGTGGCAGGGAAGCTGCGAAAGTCGAATTGGGAAGGTGACC
GCCTACGGATCGGCACTGccatgaaggggagggaactCACAAGTTTTGAC
CTCGGGGAATGCGATGGGGGACCGCACGAGTTTCGATACGTTCTGCGAAG
TGACTTGTTGCGTCAGTTGTTGCAAATCGTCCCCAAGCAACGCGTGATGT
ATAACAAAGGCTTGGAAGGATTTGGCGAGGACGAAGTGTCAGGAGGGATT
CTTGCAGAGTTTTCGGATGGGAGGAGAATGACGTCCAAGGCCCTGGTGGG
CGCCGATGGTGTAGGAAGCACAGTTCATAAGCTACTGTTCCcaggggaga
aagcggccaATTATGCAGGATATCAGGCCATTCGTGGGGTAGCGAAACTT
CCTCAAGGCGCCAAGACCAGCCCATACTTCACGTTCGAAAGAGGAGTGAT
AAACCAGGTatggggggcgggcgtcAGGCTGGGCACTTTCCGGATGTCCG
AGACGAACTTGTACTGGTTTGTCACCTACAACGGGCCTCAGAGCGGAGGG
GAGTCGGACGATGGGGCAGCATTGCTGGCCAAAGCTAGAAGCGTGCTCGA
TGGATGGGATGAAAGGTGGGGTGTCTCGACGATCCTCGCCGCCACGCCGC
CGACGGACGTGTTGCGTACGAGTATTGGAGATCGCTGGCCAAAGCCACAG
GGAAACTGGGGACGAGGATCTGTGACGCTGTTGGGAGACGCCGCGCATCC
CATGACGCCCAACCTGGGTCAGGGTGGGGCCGCTGGAATGGAGGATGCCC
TTGTTTTAGGGGAAAAGCTTGCAGCAACTTTCAAGAGAGGAAACCCCGGT
CCGGGAGAAGTGAGCCAAGCGTTGCGTACCTTTGAGAAAGAGCGCGGCCG
CAGGGTCTCATATCTGACTCTTAAATCATTCGTCTTTGGCTTTCTATTGC
AGCTGCCTTTCGCCCCTGTTACGTTCGTGAGGGACAACCTGGCCTTGCCA
CTCGTCTTCAAACCTCGGTCCTTTCTGGCACATACCAAATTTGACCCTCC
ACTCGCGCCCAAGCCCATTCGAACAACTCAACCCAAGAAAAAAACTGGGA
TATTTTATTTCTGataaagaagaagaaaagtcACGACGTAGTTGTTGGG

Coding sequence (CDS) from alignment at CM002468.1:549950..551798+

>rna6458 ID=rna6458|Name=rna6458|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at CM002468.1:549950..551798+ (Nannochloropsis gaditana)
ATGGATTTTCTTGTGACAAGATCAGTCTTATGGACATATGGGATCGCGGC
TATGCTCATAGCAATACCTCAAGGGCATGCTTTCCAAATGTCGCATCAGA
TGCATAGGCCTTCCCCACGTCTCATGGTGACGACAAAGGCATCAGTAGGC
TCCAAGGTGGATACAGATGTTTTGATTTGCGGGGCTGGTATTGCAGGATT
GGCATTGGCGGCTGACCTAGAGCGCCGTGGAGTTGATTATCGCTTGGTCG
AGAGGGCAAGCTCTCCACGAGAGGGCGGCACGGCCATCGGGTTCTGGACG
AACGCGTGGCGATGCTTGGAGAACCTCGGAGTGGCAGGGAAGCTGCGAAA
GTCGAATTGGGAAGGTGACCGCCTACGGATCGGCACTGccatgaagggga
gggaactCACAAGTTTTGACCTCGGGGAATGCGATGGGGGACCGCACGAG
TTTCGATACGTTCTGCGAAGTGACTTGTTGCGTCAGTTGTTGCAAATCGT
CCCCAAGCAACGCGTGATGTATAACAAAGGCTTGGAAGGATTTGGCGAGG
ACGAAGTGTCAGGAGGGATTCTTGCAGAGTTTTCGGATGGGAGGAGAATG
ACGTCCAAGGCCCTGGTGGGCGCCGATGGTGTAGGAAGCACAGTTCATAA
GCTACTGTTCCcaggggagaaagcggccaATTATGCAGGATATCAGGCCA
TTCGTGGGGTAGCGAAACTTCCTCAAGGCGCCAAGACCAGCCCATACTTC
ACGTTCGAAAGAGGAGTGATAAACCAGGTatggggggcgggcgtcAGGCT
GGGCACTTTCCGGATGTCCGAGACGAACTTGTACTGGTTTGTCACCTACA
ACGGGCCTCAGAGCGGAGGGGAGTCGGACGATGGGGCAGCATTGCTGGCC
AAAGCTAGAAGCGTGCTCGATGGATGGGATGAAAGGTGGGGTGTCTCGAC
GATCCTCGCCGCCACGCCGCCGACGGACGTGTTGCGTACGAGTATTGGAG
ATCGCTGGCCAAAGCCACAGGGAAACTGGGGACGAGGATCTGTGACGCTG
TTGGGAGACGCCGCGCATCCCATGACGCCCAACCTGGGTCAGGGTGGGGC
CGCTGGAATGGAGGATGCCCTTGTTTTAGGGGAAAAGCTTGCAGCAACTT
TCAAGAGAGGAAACCCCGGTCCGGGAGAAGTGAGCCAAGCGTTGCGTACC
TTTGAGAAAGAGCGCGGCCGCAGGGTCTCATATCTGACTCTTAAATCATT
CGTCTTTGGCTTTCTATTGCAGCTGCCTTTCGCCCCTGTTACGTTCGTGA
GGGACAACCTGGCCTTGCCACTCGTCTTCAAACCTCGGTCCTTTCTGGCA
CATACCAAATTTGACCCTCCACTCGCGCCCAAGCCCATTCGAACAACTCA
ACCCAAGAAAAAAACTGGGATATTTTATTTCTGa

Synonyms

Publications