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Properties
| Property Name | Value |
|---|
| Product | Paraquat-inducible protein A |
| Orig transcript id | gnl|cribi|Naga_100020g39.5398.mrna |
| Orig protein id | gnl|cribi|Naga_100020g39.5398 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:515632..517557 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6440 ID=rna6440|Name=rna6440|organism=Nannochloropsis gaditana|type=mRNA|length=1110bp
ATGACCCTCTCGATGAAAACGTGGCATTTTCTCCTTATATTTTTTGCGTT
AGGCCACGTAATGGCCTTTTTTCATATGCCTCCTCCCACTGTGTTGTGGA
AAGGAGAAACACGGGCCTCGTTGTCGCGGGCGGCAAATGAAGAGATTGGC
ACAGAGGGGGGAAAAGAGGCGGAGCAGCGTGCGCCAGTCAAGGATACCGT
GTCTTCAGGGTCCAGCGGCGCCTCATTCTCAATGGAGCTGCAAAGTAAGT
CTCCGTCTCGGATTCAAGACTTGGTACGACTTCTGCATGCATCGGAAGAC
CCGCTTTGGGAACTCGTCAAGTTTGAAGCCGAGACCTCCGCGGCCCAGGA
CGAGAAGGCGGCCGGCCTAATTCAGCAACGGGTGCTAGATCGAGGCGGCA
TCCAATCTGCAGCACGAGACTTCCTGGCCACAAAATTACAAGGCTCCAAC
TTGCCGGCGACGAAAATGAAGCTTTTGATAGACTCGGTCTTTCAGGAGGA
GCCAGGCATAGTGCAGGATCTCCGCGAGGACCTCCTTGTGGCCACCATGC
GGGACTCGAGCATTCCCTCCCTTCTCGCCGCCTTCCTCTTCTCTAAAGGC
TACCACGCCGTCGCCACCTACCGCATTGCCCACAGCATATACAGCCAGGG
TCGGGAGTCTCTTGCTCGCTACCTGCAGTCCCTGAATTCTGAGCTCTTTG
GGGCCGATATCCATCCAGCTTGCTGCGTGGGCCGGGCACTCTACCTGTCT
AGCGGGACATGCGTGGTCATAGGAGAGACAGCCAAGCTCGGCGACGATGT
CATAATCATGCAGGGCGTCACACTGGGGGGTAATGGCAAAGAGCGTGGGG
ACCGACACCCAAAACTAGGGAGCGGCGTGCTGGTGGCGGCAGGCTCTACA
GTGCTGGGCAATATCCCGATAGGGGATGGCGTCATTATCTCCGCAGGTTC
GGTGGTACTACGGCCCGTACCGGAGTATACTCGATGCAGCGGAGTCCCGG
CGAAAGTAACTTCGGTCCTTCGTAAGCATAAAGAGAATGTGTTGAGCATC
CAAGGGATGGGTCAAAGCCATTTTGTTGAAATTTTTCAGGACCCACAAAG
GGGAGGGTGA back to topprotein sequence of rna6440 >rna6440-protein ID=rna6440-protein|Name=rna6440|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MRKHKSKEKMVAGCLQSEGLSTLQHKLLAKQVANIESVKDISYCFDDDSH
NGCIAESAMSSAPHPSLLRSHVTLPATIRYGLPLLLIGNTALLLYSNLTL
GASVYARVYDGQGRTMELPVLYNVSLAGSIKDMWQSGAYWMATLIAICSG
AWPHVKLLLCLLCWTVGEKHLSPCTRRRALKVTYFLQKFSHVETITLVIL
MTAFSFTARLPNHESWGVWTYVAPQPGFFAFLGGLILSMFLSRVTLYYDQ
AWHAALSCEESSAPSTPMECDEQAHGSSSEDCGKARCMINERFLSNKVRF
DCCGSDEPLTSVGGSLEHSMWREIPTVCGVLCIGVCLIMGLVLPAFSFQF
KGLTGWILDNVTQDSPDSSASLRTMSALSLGEQIPASSESKGIGIFFLQA
SFFFFVVGAPISCLTLLVALLILKPRESRKLVMPAEILYAWSAPDVLFIS
MVVSTWEMYLFVRFVIGDRCDAVNALLREIMDDQLAGDDKCFDVVTTLKP
GCFILGVSSLLFLVAGFLVMRKVKRMVKVHADVFPHRDTERLQRC back to topmRNA from alignment at CM002468.1:515632..517557+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6440 ID=rna6440|Name=rna6440|organism=Nannochloropsis gaditana|type=mRNA|length=1926bp|location=Sequence derived from alignment at CM002468.1:515632..517557+ (Nannochloropsis gaditana)
ATGCGGTAAAACAAAATTTGTAAATAGGAAAATTGAAAGTGCACCGTATC
CACACAATCACTGTTGAcagctttcttttcctggatGTGACCATTGCCTG
TGTTCCCTGCGGCATGGCAGTAAGACAATCGGACactcctacctcccctc
cccctttccgcgGGCTCGCTAATTTCTTCCTTGAAATAACCAACTGATGT
GTCGCCCGTTACCAGAAAAGGAAGCACAAGAGTAAAGTAAGCCGTAATTC
TAGAGCGAGGTTTTGGCTGTGGAGCATATTTCACCCAAACTTTTCCCCCA
TCGCATCAGGAAAAGATGGTTGCGGGGTGTTTGCAGTCGGAGGGGCTGTC
TACACTCCAACACAAGCTTCTGGCTAAGCAAGTCGCAAACATCGAAAGTG
TAAAAGACATTTCTTATTGTTTTGATGATGATAGCCACAACGGCTGTATA
GCAGAAAGCGCGATGTCTTCTGCTCCTCATCCGTCACTGCTTCGCAGCCA
CGTGACATTGCCTGCTACGATTCGCTACGGCCTTCCGCTTCTCTTGATAG
GTAACACAGCTCTCTTGCTATATTCAAACCTTACGCTTGGTGCCTCTGTG
TATGCGAGGGTCTACGACGGGCAAGGCAGGACCATGGAGCTGCCTGTCCT
TTACAACGTCAGCTTGGCGGGGTCCATCAAAGACATGTGGCAGAGCGGGG
CTTATTGGATGGCAACTCTCATAGCAATTTGCAGTGGTGCTTGGCCACAC
GTCAAGCTTTTATTGTGCCTCTTATGCTGGACTGTGGGTGAGAAGCATCT
TTCACCCTGTACAAGACGGCGCGCCTTGAAAGTCACGTACTTTCTGCAAA
AATTCAGTCACGTCGAGACCATCACCTTAGTCATCCTCATGACCGCATTC
AGTTTTACCGCCCGGCTTCCCAATCATGAGAGTTGGGGCGTGTGGACTTA
TGTTGCACCGCAGCCGGGATTTTTTGCATTTCTCGGGGGCCTAATTCTGT
CCATGTTCCTAAGCCGCGTGACCCTTTATTACGACCAAGCCTGGCATGCT
GCGCTAAGCTGTGAAGAGAGCTCCGCTCCCTCTACGCCAATGGAATGCGA
TGAACAAGCCCATGGGAGCAGTTCTGAAGACTGTGGTAAGGCACGATGTA
TGATTAACGAACGCTTCCTGTCAAACAAAGTGCGCTTCGACTGCTGCGGC
AGCGATGAACCTTTGACCAGCGTGGGAGGCAGCTTGGAGCATTCCATGTG
GCGGGAGATCCCAACGGTGTGTGGTGTGCTCTGCATAGGAGTATGCCTCA
TCATGGGGCTTGTCCTGcccgctttttcctttcagTTTAAGGGTTTGACT
GGATGGATACTGGACAACGTCACCCAGGACTCGCCTGATTCGTCGGCATC
CCTGCGCACTATGTCGGCCCTTTCGCTTGGTGAGCAAATTCCTGCATCAT
CAGAAAGCAAAGGCATAGGCATATTCTTCTTACAGGCgtcattctttttc
tttgtggtCGGTGCACCAATAAGCTGCCTAACGTTACTTGTTGCTCTGCT
CATACTCAAGCCGAGAGAGTCTCGAAAGTTGGTAATGCCTGCAGAAATAC
TGTACGCGTGGAGTGCTCCAGATGTATTGTTCATAAGCATGGTGGTATCC
ACATGGGAGATGTACCTCTTCGTGCGCTTTGTGATAGGAGACCGTTGCGA
CGCCGTCAACGCGCTCCTCCGGGAAATAATGGATGACCAGTTGGCGGGCG
ACGACAAATGTTTTGACGTGGTCACTACTTTAAAGCCCGGCTGTTTCATC
CTGGGAGTTAGCTCCTTACTATTTTTGGTAGCCGGATTCTTGGTCATGAG
GAAGGTCAAGCGCATGGTAAAAGTGCATGCTGATGTATTTCCACACAGAG
ATACGGAAAGATTGCAGCGGTGTTGA back to topCoding sequence (CDS) from alignment at CM002468.1:515632..517557+ >rna6440 ID=rna6440|Name=rna6440|organism=Nannochloropsis gaditana|type=CDS|length=4914bp|location=Sequence derived from alignment at CM002468.1:515632..517557+ (Nannochloropsis gaditana)
ATGCGGAAGCACAAGAGTAAAGAAAAGATGGTTGCGGGGTGTTTGCAGTC
GGAGGGGCTGTCTACACTCCAACACAAGCTTCTGGCTAAGCAAGTCGCAA
ACATCGAAAGTGTAAAAGACATTTCTTATTGTTTTGATGATGATAGCCAC
AACGGCTGTATAGCAGAAAGCGCGATGTCTTCTGCTCCTCATCCGTCACT
GCTTCGCAGCCACGTGACATTGCCTGCTACGATTCGCTACGGCCTTCCGC
TTCTCTTGATAGGTAACACAGCTCTCTTGCTATATTCAAACCTTACGCTT
GGTGCCTCTGTGTATGCGAGGGTCTACGACGGGCAAGGCAGGACCATGGA
GCTGCCTGTCCTTTACAACGTCAGCTTGGCGGGGTCCATCAAAGACATGT
GGCAGAGCGGGGCTTATTGGATGGCAACTCTCATAGCAATTTGCAGTGGT
GCTTGGCCACACGTCAAGCTTTTATTGTGCCTCTTATGCTGGACTGTGGG
TGAGAAGCATCTTTCACCCTGTACAAGACGGCGCGCCTTGAAAGTCACGT
ACTTTCTGCAAAAATTCAGTCACGTCGAGACCATCACCTTAGTCATCCTC
ATGACCGCATTCAGTTTTACCGCCCGGCTTCCCAATCATGAGAGTTGGGG
CGTGTGGACTTATGTTGCACCGCAGCCGGGATTTTTTGCATTTCTCGGGG
GCCTAATTCTGTCCATGTTCCTAAGCCGCGTGACCCTTTATTACGACCAA
GCCTGGCATGCTGCGCTAAGCTGTGAAGAGAGCTCCGCTCCCTCTACGCC
AATGGAATGCGATGAACAAGCCCATGGGAGCAGTTCTGAAGACTGTGGTA
AGGCACGATGTATGATTAACGAACGCTTCCTGTCAAACAAAGTGCGCTTC
GACTGCTGCGGCAGCGATGAACCTTTGACCAGCGTGGGAGGCAGCTTGGA
GCATTCCATGTGGCGGGAGATCCCAACGGTGTGTGGTGTGCTCTGCATAG
GAGTATGCCTCATCATGGGGCTTGTCCTGcccgctttttcctttcagTTT
AAGGGTTTGACTGGATGGATACTGGACAACGTCACCCAGGACTCGCCTGA
TTCGTCGGCATCCCTGCGCACTATGTCGGCCCTTTCGCTTGGTGAGCAAA
TTCCTGCATCATCAGAAAGCAAAGGCATAGGCATATTCTTCTTACAGGCg
tcattctttttctttgtggtCGGTGCACCAATAAGCTGCCTAACGTTACT
TGTTGCTCTGCTCATACTCAAGCCGAGAGAGTCTCGAAAGTTGGTAATGC
CTGCAGAAATACTGTACGCGTGGAGTGCTCCAGATGTATTGTTCATAAGC
ATGGTGGTATCCACATGGGAGATGTACCTCTTCGTGCGCTTTGTGATAGG
AGACCGTTGCGACGCCGTCAACGCGCTCCTCCGGGAAATAATGGATGACC
AGTTGGCGGGCGACGACAAATGTTTTGACGTGGTCACTACTTTAAAGCCC
GGCTGTTTCATCCTGGGAGTTAGCTCCTTACTATTTTTGGTAGCCGGATT
CTTGGTCATGAGGAAGGTCAAGCGCATGGTAAAAGTGCATGCTGATGTAT
TTCCACACAGAGATACGGAAAGATTGCAGCGGTGTTGAATGCGGAAGCAC
AAGAGTAAAGAAAAGATGGTTGCGGGGTGTTTGCAGTCGGAGGGGCTGTC
TACACTCCAACACAAGCTTCTGGCTAAGCAAGTCGCAAACATCGAAAGTG
TAAAAGACATTTCTTATTGTTTTGATGATGATAGCCACAACGGCTGTATA
GCAGAAAGCGCGATGTCTTCTGCTCCTCATCCGTCACTGCTTCGCAGCCA
CGTGACATTGCCTGCTACGATTCGCTACGGCCTTCCGCTTCTCTTGATAG
GTAACACAGCTCTCTTGCTATATTCAAACCTTACGCTTGGTGCCTCTGTG
TATGCGAGGGTCTACGACGGGCAAGGCAGGACCATGGAGCTGCCTGTCCT
TTACAACGTCAGCTTGGCGGGGTCCATCAAAGACATGTGGCAGAGCGGGG
CTTATTGGATGGCAACTCTCATAGCAATTTGCAGTGGTGCTTGGCCACAC
GTCAAGCTTTTATTGTGCCTCTTATGCTGGACTGTGGGTGAGAAGCATCT
TTCACCCTGTACAAGACGGCGCGCCTTGAAAGTCACGTACTTTCTGCAAA
AATTCAGTCACGTCGAGACCATCACCTTAGTCATCCTCATGACCGCATTC
AGTTTTACCGCCCGGCTTCCCAATCATGAGAGTTGGGGCGTGTGGACTTA
TGTTGCACCGCAGCCGGGATTTTTTGCATTTCTCGGGGGCCTAATTCTGT
CCATGTTCCTAAGCCGCGTGACCCTTTATTACGACCAAGCCTGGCATGCT
GCGCTAAGCTGTGAAGAGAGCTCCGCTCCCTCTACGCCAATGGAATGCGA
TGAACAAGCCCATGGGAGCAGTTCTGAAGACTGTGGTAAGGCACGATGTA
TGATTAACGAACGCTTCCTGTCAAACAAAGTGCGCTTCGACTGCTGCGGC
AGCGATGAACCTTTGACCAGCGTGGGAGGCAGCTTGGAGCATTCCATGTG
GCGGGAGATCCCAACGGTGTGTGGTGTGCTCTGCATAGGAGTATGCCTCA
TCATGGGGCTTGTCCTGcccgctttttcctttcagTTTAAGGGTTTGACT
GGATGGATACTGGACAACGTCACCCAGGACTCGCCTGATTCGTCGGCATC
CCTGCGCACTATGTCGGCCCTTTCGCTTGGTGAGCAAATTCCTGCATCAT
CAGAAAGCAAAGGCATAGGCATATTCTTCTTACAGGCgtcattctttttc
tttgtggtCGGTGCACCAATAAGCTGCCTAACGTTACTTGTTGCTCTGCT
CATACTCAAGCCGAGAGAGTCTCGAAAGTTGGTAATGCCTGCAGAAATAC
TGTACGCGTGGAGTGCTCCAGATGTATTGTTCATAAGCATGGTGGTATCC
ACATGGGAGATGTACCTCTTCGTGCGCTTTGTGATAGGAGACCGTTGCGA
CGCCGTCAACGCGCTCCTCCGGGAAATAATGGATGACCAGTTGGCGGGCG
ACGACAAATGTTTTGACGTGGTCACTACTTTAAAGCCCGGCTGTTTCATC
CTGGGAGTTAGCTCCTTACTATTTTTGGTAGCCGGATTCTTGGTCATGAG
GAAGGTCAAGCGCATGGTAAAAGTGCATGCTGATGTATTTCCACACAGAG
ATACGGAAAGATTGCAGCGGTGTTGAATGCGGAAGCACAAGAGTAAAGAA
AAGATGGTTGCGGGGTGTTTGCAGTCGGAGGGGCTGTCTACACTCCAACA
CAAGCTTCTGGCTAAGCAAGTCGCAAACATCGAAAGTGTAAAAGACATTT
CTTATTGTTTTGATGATGATAGCCACAACGGCTGTATAGCAGAAAGCGCG
ATGTCTTCTGCTCCTCATCCGTCACTGCTTCGCAGCCACGTGACATTGCC
TGCTACGATTCGCTACGGCCTTCCGCTTCTCTTGATAGGTAACACAGCTC
TCTTGCTATATTCAAACCTTACGCTTGGTGCCTCTGTGTATGCGAGGGTC
TACGACGGGCAAGGCAGGACCATGGAGCTGCCTGTCCTTTACAACGTCAG
CTTGGCGGGGTCCATCAAAGACATGTGGCAGAGCGGGGCTTATTGGATGG
CAACTCTCATAGCAATTTGCAGTGGTGCTTGGCCACACGTCAAGCTTTTA
TTGTGCCTCTTATGCTGGACTGTGGGTGAGAAGCATCTTTCACCCTGTAC
AAGACGGCGCGCCTTGAAAGTCACGTACTTTCTGCAAAAATTCAGTCACG
TCGAGACCATCACCTTAGTCATCCTCATGACCGCATTCAGTTTTACCGCC
CGGCTTCCCAATCATGAGAGTTGGGGCGTGTGGACTTATGTTGCACCGCA
GCCGGGATTTTTTGCATTTCTCGGGGGCCTAATTCTGTCCATGTTCCTAA
GCCGCGTGACCCTTTATTACGACCAAGCCTGGCATGCTGCGCTAAGCTGT
GAAGAGAGCTCCGCTCCCTCTACGCCAATGGAATGCGATGAACAAGCCCA
TGGGAGCAGTTCTGAAGACTGTGGTAAGGCACGATGTATGATTAACGAAC
GCTTCCTGTCAAACAAAGTGCGCTTCGACTGCTGCGGCAGCGATGAACCT
TTGACCAGCGTGGGAGGCAGCTTGGAGCATTCCATGTGGCGGGAGATCCC
AACGGTGTGTGGTGTGCTCTGCATAGGAGTATGCCTCATCATGGGGCTTG
TCCTGcccgctttttcctttcagTTTAAGGGTTTGACTGGATGGATACTG
GACAACGTCACCCAGGACTCGCCTGATTCGTCGGCATCCCTGCGCACTAT
GTCGGCCCTTTCGCTTGGTGAGCAAATTCCTGCATCATCAGAAAGCAAAG
GCATAGGCATATTCTTCTTACAGGCgtcattctttttctttgtggtCGGT
GCACCAATAAGCTGCCTAACGTTACTTGTTGCTCTGCTCATACTCAAGCC
GAGAGAGTCTCGAAAGTTGGTAATGCCTGCAGAAATACTGTACGCGTGGA
GTGCTCCAGATGTATTGTTCATAAGCATGGTGGTATCCACATGGGAGATG
TACCTCTTCGTGCGCTTTGTGATAGGAGACCGTTGCGACGCCGTCAACGC
GCTCCTCCGGGAAATAATGGATGACCAGTTGGCGGGCGACGACAAATGTT
TTGACGTGGTCACTACTTTAAAGCCCGGCTGTTTCATCCTGGGAGTTAGC
TCCTTACTATTTTTGGTAGCCGGATTCTTGGTCATGAGGAAGGTCAAGCG
CATGGTAAAAGTGCATGCTGATGTATTTCCACACAGAGATACGGAAAGAT
TGCAGCGGTGTTGA back to top
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