rna6425, rna6425 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6425
Unique Name	rna6425
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1819
Alignment location	CM002468.1:483348..486887 -

Link to JBrowse

Properties


Property Name	Value
Product	atp-binding cassette transporter
Orig transcript id	gnl\|cribi\|Naga_100020g53.5347.mrna
Orig protein id	gnl\|cribi\|Naga_100020g53.5347
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:483348..486887 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g53	gene6208	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24214.1	cds6409	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6425	rna6425-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:483348..486887-
coding sequence from alignment at CM002468.1:483348..486887-

mRNA sequence

>rna6425 ID=rna6425|Name=rna6425|organism=Nannochloropsis gaditana|type=mRNA|length=1819bp
GGATTAATCTCTCCGTGTCTGAGTTTTAAATGTAGATAGAAATGCTTTGG
CGTACAGAGATGGAGGACGGACAACATGCGAACAAGCATGTGCCCGGTGT
GTCTGACAGTGCAAGTGACCGGCCTGAGCATGTAGAGACGGTGATCTTGA
CGCCCCCGGGGAAATGGAAGGAGGTTATATGCTCGAGGCTGCCATAGCCT
TTTAAGAAATCTTATGCTCTCACTATCAATTGGTTGCCATCAGGTCAACA
CCTACATTTACAGGCTACTTTTCATTTTTTGAGGCTCCACGTACGTAATT
ATCTCCTTCTTTTGCTGTCTGCCTCTATCAATCCTAATTGGAGCCGTGGT
TTAAATGCTTCGTCGGCTTCTACGTCCCTTTGTAAAGCAGATCCATCCAG
ACTTCCATCAGAATGCCCCGACAGCTGTGAAACGTACGAATGAGCAGTCA
CTGCAGCAGCTAAATCGAATCTTAGACGCCTTGGAAGCTGTGGGGAGAGG
ACAGCTCAGTACGCAGAGTAGGCATGTTGTAAGCAACGCTTTTCAGTCAC
ACTATCTTGAAGAATGTTACGAGCTGACATTTCACGTTGTAAGGCCAAAC
AGTACAATCGGAAAACTGAAAGACAACACTTTTACTTCTTCGCCACTGCA
AAGCTTCACCGCGCGCCTTCTTTTTCCATCAAGTACTATTTCGCATTTCG
CTAAAACAGCTCTGCCGAACGCATCCTCATCTACGAAAACACACGACAAA
GTGACATACTTCTTACCGGAAGAGATACGTCAGCAGTTACGGAAGCTTCT
CTACGGCGCTGGATTGACCATCCCGAATGAATTAAAATCGATTACTGCTA
AAGCGCAAGGCTATGATGAATTAAGGCCTCATGGGTTGATAAGTGCAGCA
GCCGCCAAAATGATGGTGCTTGCCGATCTGATGACACAAGATCTTCATCA
TGAAGGCTCAACCACATTTGATTCTAGCGCTGCTGTCGCTCACATGCTAC
GGAGTGGAAGGATTTTGACGAAGGGTTTGGTCCCGGCAGAAGAAGTGCTT
GCCATCCAGGTTCTTGAGAAAGTTCTGCACAGTATTTTGGAAGAGGTCCA
GCTCGAAGAGATTCTGACAAGCATTCAAATTGTGCTCGACAGGGAATCTG
ATAAGCTCTGGTGGGAGATACTTTCAAGCAAAGTTTCGGGTAAATGTGAA
TATATTTTTGTTTGTCCCGCAGATTCGAGAAGGGTACGACACAGTCTAGC
ATTTATTCTTCGTTTAATCAGCCACCGAAATGCTACGGAGGCCTGAAAAC
TTCTCAGAATAGGTATTGGTACCCGTATTTGAGAGTTTTTTCAAAATTCT
ATGGTTTTCGTGAATCTTGCAAGTGTAGAGTATATGCTCTGTACACACCA
TGAACATAAAGGATAAATAGGACGTTTGTTGTTTAGAAAGGATGTAAAGT
ATAATTACGTGTATAACAAATATTCCAAGACATGCAATCTAAGTACTCTT
CGGCATGGATTCATCGAACTTATTTTTATTACACTTCAACGACTCGTGCG
CTTCGTATATCGTTGACATGCCCTTGCCATGTGGTGTAAAGGTCATTCGA
AGGCCAAACTTTATGTCGGTGATAGTACGCAAGCTAGTGACGAAAGCTCG
AGCCATTTTGCAAGATGTATGACAATGATTTGAATAGCTCCAGGGTCTGT
CCTGATTATCAACATCTGCAATAATAAATATTCTTAATCAGCTAGAAAAG
TGATGCTTTTTACTTTCCAGTGATCTTTTTAAGTTTCTGTCCATCAAATC
ATACAATTAAAATATCATC

protein sequence of rna6425

>rna6425-protein ID=rna6425-protein|Name=rna6425|organism=Nannochloropsis gaditana|type=polypeptide|length=640bp
MGLKSRRPPKKGTAAAAAATKKKMEEDTKTEATSEASASTLSLENLRMDD
GPSAVEKLSADGIIATYSSTSKEMHRNTKDINVQNVTVQFMGKILLDDSE
IVLNHGNRYGFLGMNGSGKSTIMRVLGARAVPIPDGIDMFHLTHEIEASD
LTALEAVMSVDEERAKLEREADLLNNIMTEDGAEARDDYDDIVDRLQQVY
ERLEEMDASTAEVRACSILSGLGFTKATMKKKTREFSGGWRMRIALARAL
FLSPELLLLDEPTNHLDMEAVVWLEDYLSAWKKILFLVSHSQDFLNNVCT
HIVHLSDKKLKYYTGNYDSFVQTRAELEEEQMKRYHWEQDQIKQMKEYIA
KFGHGSAKLARQAQSKEKTLAKMVRGGLTDKVVREASFNFRFPDPGSLPP
PVLQLVNITFGYPGCEVLYRNVDYGVDLDSRVALVGPNGAGKSTLLKLMC
GLLVPTVGDVRPHSHLRISTFTQHFVDVLDLTKTPLDFMCDTYKEASREE
LRKFLGRYGVSGEVQTQVMANLSDGQRTRVVFAKMAKDAPHLLLLDEPTN
HLDMESIDSLADAINHFAGGVVLVSHDMRLISQVAKEIWMCDNKTISRYE
GDIGDFKMILRKQMHLKGEQKKIGMADKSTRASNAGGVDN

mRNA from alignment at CM002468.1:483348..486887-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6425 ID=rna6425|Name=rna6425|organism=Nannochloropsis gaditana|type=mRNA|length=3540bp|location=Sequence derived from alignment at CM002468.1:483348..486887- (Nannochloropsis gaditana)
TGTCTCTGTCTTCCCGTTTAGTGTCGTACTCTTCTCATGGAGTATTCCCC
ACCGATCTTCCAATTGATGCGCAGCATTCGCCCCGCGACGACCATCTTCT
TAGGCACGCAGTGTGATGCACAGCACAATGGAGCCAATGGCAAATAAGCA
TGTCTTCGCGTCTTATATTCCTTTGTGTGACTTCTTTTTAACCATACAGG
TCCGCCTTAAATAACGTCACCGTTCGAAAATGGGTCTCAAGTCTCGCCGG
CCACCAAAGAAGGGGACTGCGGCTGCTGCAGCCGCTACTAAAAAAAAAAT
GGAGGAAGATACCAAGACAGAAGCGACCTCGGAGGCGTCTGCCTCGACGT
TGAGCCTCGAGAACCTGCGGATGGATGACGGGCCCTCGGCAGTGGAAAAG
CTGTCGGCTGACGGGATCATCGCGACGTACTCAAGCACAAGCAAGGAAAT
GCACCGCAACACGAAAGACATCAACGTACAAAATGTGACGGTCCAATTCA
TGGGCAAAATTCTCTTGGATGACAGTGAGATAGTGCTGAACCATGGAAAC
CGCTATGGCTTTTTGGGCATGAATGGTTCAGGCAAATCTACCATCATGCG
GGTACTCGGGGCACGCGCCGTACCTATCCCAGATGGCATCGACATGTTTC
ATCTTACACACGAGATAGAGGCGAGTGACCTAACGGCCCTCGAGGCTGTG
ATGTCTGTCGATGAGGAACGCGCCAAGCTGGAGAGGGAAGCAGACCTGCT
GAACAACATCATGACGGAGGACGGTGCGGAGGCTCGAGATGACTATGATG
ACATCGTGGACCGGTTGCAACAGGTCTACGAACGCTTGGAAGAGATGGAT
GCCTCCACGGCAGAGGTCCGCGCTTGCTCCATTCTCTCAGGTCTGGGTTT
TACGAAGGCCACTATGAAGAAGAAGACGCGTGAATTCTCCGGTGGTTGGC
GTATGCGCATCGCCTTGGCCCGGGCACTCTTCTTGTCGCCCGAACTATTG
CTCTTAGATGAACCAACAAATCATTTGGACATGGAGGCGGTTGTGTGGCT
CGAGGACTACCTTTCAGCCTGGAAGAAGATTTTGTTCTTGGTCTCGCACT
CGCAGGACTTTTTGAACAATGTTTGCACTCATATTGTCCACCTGTCGGAC
AAAAAACTGAAGTACTACACCGGGAATTATGATTCCTTTGTTCAGACGCG
CGCTGAATTGGAAGAAGAGCAGATGAAGCGTTACCACTGGGAACAAGACC
AAATTAAACAGATGAAGGAGTACATTGCCAAGTTTGGCCACGGCAGCGCC
AAGCTTGCACGTCAGGCTCAGAGCAAGGAGAAGACACTAGCTAAAATGGT
ACGAGGTGGCCTCACGGACAAAGTAGTGAGAGAAGCGAGCTTCAACTTTC
GCTTTCCTGATCCGGGCTCGCTTCCTCCCCCTGTGCTGCAGCTGGTGAAC
ATCACATTTGGTTACCCTGGTTGCGAGGTGCTTTATCGGAATGTAGACTA
TGGAGTCGACCTGGACTCTCGGGTAGCTCTTGTAGGACCCAATGGTGCTG
GCAAATCGACTTTGCTGAAGCTTATGTGCGGCCTGCTTGTACCAACCGTC
GGGGACGTGCGTCCACACTCGCATCTGCGAATTTCGACCTTCACTCAGCA
CTTTGTTGACGTGCTTGATCTGACCAAAACTCCCCTTGACTTCATGTGCG
ACACGTACAAGGAAGCGAGTAGGGAGGAACTTCGGAAATTTCTCGGCCGA
TACGGAGTCTCGGGTGAGGTCCAGACTCAGGTCATGGCAAATTTGTCGGA
TGGGCAGCGTACGCGTGTCGTCTTCGCAAAGATGGCTAAAGACGCACCAC
ATTTGTTGCTTTTAGATGAACCCACCAATCATTTGGATATGGAGTCCATC
GACTCTTTGGCAGATGCTATCAACCATTTTGCAGGTGGAGTTGTCTTAGT
TTCGCACGATATGCGCCTAATATCTCAGGTCGCGAAGGAAATTTGGATGT
GCGACAACAAAACAATTTCCAGATATGAAGGGGACATAGGTGATTTTAAA
ATGATATTGCGAAAGCAAATGCATTTGAAAGGTGAACAGAAAAAGATTGG
TATGGCAGATAAGTCCACCAGAGCCTCGAATGCTGGCGGTGTAGACAATT
AAATTGACGGATAAGTCGCATTACGTCTAATAAAATTCAGGACGTATTCA
AAAATCGGGAACAAATCTTCAATGCGTACGTGTAATGGTTGCAGTGGAGT
AACATCGTAAATATACGAATGTGAGAAAAACTAAAACGAAGGTAGAAGAG
ACGTATTGCTGTCTTATACAGTTAAAGTTAAGAACGGGCCATCGTTTAAA
CTTAGTTGAGAGGAACTGATACTAGAAAGTCAGTCCTAGGGATGATGGCG
CAAATTTGAAAGAGCAGAAAAGTTTCAATGCTTGTGAAGCGTTCCACCAC
ATCAAAGCTGTGAAGATTGTGGGAGAATGCTATACAGAAGATTCAACTCT
TTCGATGACACCGATTGGAGACTTCATAACATTTGGCACCACAAATGAAA
GTCATTGGTGTTGTGAGAAACATTAATTTGATATGAGAAAGGGCACTCAT
GATAAGGTCCATTTAAACTGCGTGAGCTGTGCCGAGCTATAAGCGCCCCA
AAATGGCAGCCAAACATATACAGAGTAGGCCCTGCCTCTCCGGGTGGCAA
ACACCTACCCCTTTTCGACCTTTCTGCAAGACATCGAGGAGATCAAGCGC
GCACCAAAAGTTTCACACACTTTGATTAATATTTTCTATTTATCTCGGCT
TTATGAACTCGACGAGAAATCTTTTCTGTAGACGATTAATATATCGTCTT
CATCCATTTAAAAAGACTTTTCTGGCATTCACCTATAATATCTCCCCGGC
TGAAACGATGCGTTTCCATGGAGTTATCAATGTTTTTAATTGCGAAAAGT
CTGATGGAGCATTACATCTCAAATAACTTATCCAGCTTAAGTCTTATGCC
GTGAAGGATAAAATAAAGGTGCCCTTTAGTACATGTGAACAAGAGTAATC
TGTCTCCTAGACTTGATGATATTTTAATTGTATGATTTGATGGACAGAAA
CTTAAAAAGATCACTGGAAAGTAAAAAGCATCACTTTTCTAGCTGATTAA
GAATATTTATTATTGCAGATGTTGATAATCAGGACAGACCCTGGAGCTAT
TCAAATCATTGTCATACATCTTGCAAAATGGCTCGAGCTTTCGTCACTAG
CTTGCGTACTATCACCGACATAAAGTTTGGCCTTCGAATGACCTTTACAC
CACATGGCAAGGGCATGTCAACGATATACGAAGCGCACGAGTCGTTGAAG
TGTAATAAAAATAAGTTCGATGAATCCATGCCGAAGAGTACTTAGATTGC
ATGTCTTGGAATATTTGTTATACACGTAATTATACTTTACATCCTTTCTA
AACAACAAACGTCCTATTTATCCTTTATGTTCATGGTGTGTACAGAGCAT
ATACTCTACACTTGCAAGATTCACGAAAACCATAGAATTT

Coding sequence (CDS) from alignment at CM002468.1:483348..486887-

>rna6425 ID=rna6425|Name=rna6425|organism=Nannochloropsis gaditana|type=CDS|length=1923bp|location=Sequence derived from alignment at CM002468.1:483348..486887- (Nannochloropsis gaditana)
ATGGGTCTCAAGTCTCGCCGGCCACCAAAGAAGGGGACTGCGGCTGCTGC
AGCCGCTACTAAAAAAAAAATGGAGGAAGATACCAAGACAGAAGCGACCT
CGGAGGCGTCTGCCTCGACGTTGAGCCTCGAGAACCTGCGGATGGATGAC
GGGCCCTCGGCAGTGGAAAAGCTGTCGGCTGACGGGATCATCGCGACGTA
CTCAAGCACAAGCAAGGAAATGCACCGCAACACGAAAGACATCAACGTAC
AAAATGTGACGGTCCAATTCATGGGCAAAATTCTCTTGGATGACAGTGAG
ATAGTGCTGAACCATGGAAACCGCTATGGCTTTTTGGGCATGAATGGTTC
AGGCAAATCTACCATCATGCGGGTACTCGGGGCACGCGCCGTACCTATCC
CAGATGGCATCGACATGTTTCATCTTACACACGAGATAGAGGCGAGTGAC
CTAACGGCCCTCGAGGCTGTGATGTCTGTCGATGAGGAACGCGCCAAGCT
GGAGAGGGAAGCAGACCTGCTGAACAACATCATGACGGAGGACGGTGCGG
AGGCTCGAGATGACTATGATGACATCGTGGACCGGTTGCAACAGGTCTAC
GAACGCTTGGAAGAGATGGATGCCTCCACGGCAGAGGTCCGCGCTTGCTC
CATTCTCTCAGGTCTGGGTTTTACGAAGGCCACTATGAAGAAGAAGACGC
GTGAATTCTCCGGTGGTTGGCGTATGCGCATCGCCTTGGCCCGGGCACTC
TTCTTGTCGCCCGAACTATTGCTCTTAGATGAACCAACAAATCATTTGGA
CATGGAGGCGGTTGTGTGGCTCGAGGACTACCTTTCAGCCTGGAAGAAGA
TTTTGTTCTTGGTCTCGCACTCGCAGGACTTTTTGAACAATGTTTGCACT
CATATTGTCCACCTGTCGGACAAAAAACTGAAGTACTACACCGGGAATTA
TGATTCCTTTGTTCAGACGCGCGCTGAATTGGAAGAAGAGCAGATGAAGC
GTTACCACTGGGAACAAGACCAAATTAAACAGATGAAGGAGTACATTGCC
AAGTTTGGCCACGGCAGCGCCAAGCTTGCACGTCAGGCTCAGAGCAAGGA
GAAGACACTAGCTAAAATGGTACGAGGTGGCCTCACGGACAAAGTAGTGA
GAGAAGCGAGCTTCAACTTTCGCTTTCCTGATCCGGGCTCGCTTCCTCCC
CCTGTGCTGCAGCTGGTGAACATCACATTTGGTTACCCTGGTTGCGAGGT
GCTTTATCGGAATGTAGACTATGGAGTCGACCTGGACTCTCGGGTAGCTC
TTGTAGGACCCAATGGTGCTGGCAAATCGACTTTGCTGAAGCTTATGTGC
GGCCTGCTTGTACCAACCGTCGGGGACGTGCGTCCACACTCGCATCTGCG
AATTTCGACCTTCACTCAGCACTTTGTTGACGTGCTTGATCTGACCAAAA
CTCCCCTTGACTTCATGTGCGACACGTACAAGGAAGCGAGTAGGGAGGAA
CTTCGGAAATTTCTCGGCCGATACGGAGTCTCGGGTGAGGTCCAGACTCA
GGTCATGGCAAATTTGTCGGATGGGCAGCGTACGCGTGTCGTCTTCGCAA
AGATGGCTAAAGACGCACCACATTTGTTGCTTTTAGATGAACCCACCAAT
CATTTGGATATGGAGTCCATCGACTCTTTGGCAGATGCTATCAACCATTT
TGCAGGTGGAGTTGTCTTAGTTTCGCACGATATGCGCCTAATATCTCAGG
TCGCGAAGGAAATTTGGATGTGCGACAACAAAACAATTTCCAGATATGAA
GGGGACATAGGTGATTTTAAAATGATATTGCGAAAGCAAATGCATTTGAA
AGGTGAACAGAAAAAGATTGGTATGGCAGATAAGTCCACCAGAGCCTCGA
ATGCTGGCGGTGTAGACAATTAA

Synonyms

Publications