EWM24253.1, cds6385 (CDS) Nannochloropsis gaditana

Overview
NameEWM24253.1
Unique Namecds6385
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:433637..434065 -
Alignment locationCM002468.1:433327..433539 -

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Properties
Property NameValue
Protein idEWM24253.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g81.5386.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:433637..434065 -
CM002468.1supercontigCM002468.1:433327..433539 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24253.1 vs. NCBI_GenBank
Match: gi|585105644|gb|EWM24253.1| (hypothetical protein Naga_100020g81 [Nannochloropsis gaditana])

HSP 1 Score: 441.81 bits (1135), Expect = 4.770e-157
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 
Query:    1 MTRFVACAVFLFVHVALTGISVTTCQHTQGRCASAFLRPSQSASSTRKAFHDVEVKDVPLINYVSVARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRPQSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQSLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTFTQKMVSFLLADDISMRNEIIWKRTELQ 213
            MTRFVACAVFLFVHVALTGISVTTCQHTQGRCASAFLRPSQSASSTRKAFHDVEVKDVPLINYVSVARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRPQSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQSLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTFTQKMVSFLLADDISMRNEIIWKRTELQ
Sbjct:    1 MTRFVACAVFLFVHVALTGISVTTCQHTQGRCASAFLRPSQSASSTRKAFHDVEVKDVPLINYVSVARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRPQSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQSLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTFTQKMVSFLLADDISMRNEIIWKRTELQ 213
[Close]
BLAST of EWM24253.1 vs. NCBI_GenBank
Match: gi|298715125|emb|CBJ27813.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 81.6481 bits (200), Expect = 8.243e-16
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 0 
Query:   67 ARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRPQSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQSLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTFTQKMVS 192
            ARYPL G P    KLH A++V    ++ +   RP S       + +LFDF+P  PT   T   LL G  VPG +RE+ +   P    + G     + D+R F + Y   L L+ NNC +F    V+
Sbjct:   52 ARYPLEGGPPQV-KLHIAIIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVA 176
The following BLAST results are available for this feature:
BLAST of EWM24253.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105644|gb|EWM24253.1|4.770e-157100.00hypothetical protein Naga_100020g81 [Nannochlorops... [more]
gi|298715125|emb|CBJ27813.1|8.243e-1634.92expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6401rna6401Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications