rna6401, rna6401 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6401
Unique Name	rna6401
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002468.1:432656..434078 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100020g81.5386.mrna
Orig protein id	gnl\|cribi\|Naga_100020g81.5386
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:432656..434078 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g81	gene6185	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6401	rna6401-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24253.1	cds6385	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002468.1:432656..434078-
coding sequence from alignment at CM002468.1:432656..434078-

protein sequence of rna6401

>rna6401-protein ID=rna6401-protein|Name=rna6401|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MTRFVACAVFLFVHVALTGISVTTCQHTQGRCASAFLRPSQSASSTRKAF
HDVEVKDVPLINYVSVARYPLIGWPKWAPKLHTAVVVSTMTTSDDVPKRP
QSICVAASSQHILFDFIPAAPTDVRTARSLLWGERVPGIIREKAINSAPQ
SLAFQGICRRRLDDIRDFCSTYDAELHLLDNNCHTFTQKMVSFLLADDIS
MRNEIIWKRTELQ

mRNA from alignment at CM002468.1:432656..434078-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6401 ID=rna6401|Name=rna6401|organism=Nannochloropsis gaditana|type=mRNA|length=1423bp|location=Sequence derived from alignment at CM002468.1:432656..434078- (Nannochloropsis gaditana)
CTTACTAAGGATCATGACGAGATTTGTTGCTTGCGCGGTATTTCTGTTCG
TTCACGTCGCCTTGACCGGTATCAGCGTCACAACCTGCCAACACACTCAA
GGCCGGTGTGCTTCAGCATTTTTGCGCCCATCACAATCAGCGTCTTCAAC
TCGCAAAGCATTCCATGATGTTGAAGTAAAAGATGTGCCGTTGATAAATT
ATGTGAGTGTAGCTCGATATCCACTCATAGGATGGCCAAAGTGGGCCCCC
AAGCTGCACACTGCGGTAGTGGTCAGTACCATGACAACGTCAGATGACGT
CCCAAAAAGACCACAGAGCATTTGTGTCGCTGCCTCTTCACAGCACATAC
TATTTGACTTCATTCCTGCCGCTCCGACGGATGTTCGGACCGCCCGAAGC
TTACTTTGGGGTGAACGAGTGCCCGGAATTATTCGAGAAAAGGTAATATT
TTTCCAATCGCAATGTCTGCCATCCTTGCACCTTCAAATGTCTGATAGTC
TTTCTTAGATTGTACACCATATATGGCTTGATCCTACAGGCAATCAACTC
GGCTCCCCAATCACTTGCTTTTCAAGGAATTTGTCGGCGAAGATTGGATG
ACATTCGTGATTTTTGTTCTACGTACGACGCGGAACTCCACCTTTTGGAT
AATAACTGCCACACCTTTACACAAAAAATGGTTTCCTTTCTTCTTGCTGA
TGATATATCAATGCGGAACGAAATTATATGGAAGAGGACCGAGTTGCAAT
AATTCGAGATCGGCGGTCTATCAGTTTGACTGTTTGCGTGTTTCTGTATC
GTGAAATAAGTTTCAGCATGCGAGTGCGGAGATACAGATGTAAACTAAAT
AAATGCTTCAGCATGGGATTTTTTTCACGAAAACCTTTGTCATTGCACGC
CGCGCACTGTTGTGAGCTCCTGTTTGAACGCAGCATCAGATTGTTGATCT
GATCAAGTCAGGGCTGCTCCAGGTGATTATCGGCGAACTATAAATTGATA
CGCGGGTACAGCTAAAGCATTCTAGGTTTATGTTGTTGCTCATATACAGT
GCAATTGAATTGAAGCACAAGGAAAAGCTCTATTTGACGTCAATTGCTCG
TCCTAAAGCTTTATTCGTTTCATTACGGTTGACCCGCGAAGCTGTCATTA
AGCTATATGTTATTGGAAAAAGCAAAGTGAGCAAAACTCAAGAATCGAAA
GCAACTGAAGAAGTTATTTACGAGGTAAAGAAGCACATGAAAAACGACCC
GATCCCAAGTGTGTCAGGCGGGATATTAAGCACAAAGTATACGAAGTGGC
CCTTAACAATGATGGCTCAACAGCCAAAGTAACGCGTCCGATACAAGATC
CTTCATAACACAGATGACGAATGGAGTTCGCGATATATGGTTTTTGGTAG
GAACTAATTGACAGAATGGTTGG

Coding sequence (CDS) from alignment at CM002468.1:432656..434078-

>rna6401 ID=rna6401|Name=rna6401|organism=Nannochloropsis gaditana|type=CDS|length=1284bp|location=Sequence derived from alignment at CM002468.1:432656..434078- (Nannochloropsis gaditana)
GCAATCAACTCGGCTCCCCAATCACTTGCTTTTCAAGGAATTTGTCGGCG
AAGATTGGATGACATTCGTGATTTTTGTTCTACGTACGACGCGGAACTCC
ACCTTTTGGATAATAACTGCCACACCTTTACACAAAAAATGGTTTCCTTT
CTTCTTGCTGATGATATATCAATGCGGAACGAAATTATATGGAAGAGGAC
CGAGTTGCAATAAATGACGAGATTTGTTGCTTGCGCGGTATTTCTGTTCG
TTCACGTCGCCTTGACCGGTATCAGCGTCACAACCTGCCAACACACTCAA
GGCCGGTGTGCTTCAGCATTTTTGCGCCCATCACAATCAGCGTCTTCAAC
TCGCAAAGCATTCCATGATGTTGAAGTAAAAGATGTGCCGTTGATAAATT
ATGTGAGTGTAGCTCGATATCCACTCATAGGATGGCCAAAGTGGGCCCCC
AAGCTGCACACTGCGGTAGTGGTCAGTACCATGACAACGTCAGATGACGT
CCCAAAAAGACCACAGAGCATTTGTGTCGCTGCCTCTTCACAGCACATAC
TATTTGACTTCATTCCTGCCGCTCCGACGGATGTTCGGACCGCCCGAAGC
TTACTTTGGGGTGAACGAGTGCCCGGAATTATTCGAGAAAAGGCAATCAA
CTCGGCTCCCCAATCACTTGCTTTTCAAGGAATTTGTCGGCGAAGATTGG
ATGACATTCGTGATTTTTGTTCTACGTACGACGCGGAACTCCACCTTTTG
GATAATAACTGCCACACCTTTACACAAAAAATGGTTTCCTTTCTTCTTGC
TGATGATATATCAATGCGGAACGAAATTATATGGAAGAGGACCGAGTTGC
AATAAATGACGAGATTTGTTGCTTGCGCGGTATTTCTGTTCGTTCACGTC
GCCTTGACCGGTATCAGCGTCACAACCTGCCAACACACTCAAGGCCGGTG
TGCTTCAGCATTTTTGCGCCCATCACAATCAGCGTCTTCAACTCGCAAAG
CATTCCATGATGTTGAAGTAAAAGATGTGCCGTTGATAAATTATGTGAGT
GTAGCTCGATATCCACTCATAGGATGGCCAAAGTGGGCCCCCAAGCTGCA
CACTGCGGTAGTGGTCAGTACCATGACAACGTCAGATGACGTCCCAAAAA
GACCACAGAGCATTTGTGTCGCTGCCTCTTCACAGCACATACTATTTGAC
TTCATTCCTGCCGCTCCGACGGATGTTCGGACCGCCCGAAGCTTACTTTG
GGGTGAACGAGTGCCCGGAATTATTCGAGAAAAG

Synonyms

Publications