EWM24328.1, cds6356 (CDS) Nannochloropsis gaditana

Overview
NameEWM24328.1
Unique Namecds6356
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:369306..372158 -

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Properties
Property NameValue
Protein idEWM24328.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100047g13.6091.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:369306..372158 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR001876Znf_RanBP2
Homology
[Close]
BLAST of EWM24328.1 vs. NCBI_GenBank
Match: gi|585105720|gb|EWM24328.1| (hypothetical protein Naga_100047g13 [Nannochloropsis gaditana])

HSP 1 Score: 1928.68 bits (4995), Expect = 0.000e+0
Identity = 950/950 (100.00%), Postives = 950/950 (100.00%), Query Frame = 0 
Query:    1 MASGIYFDLPGFDLLRPVIPASSARKHEVVGKWKPDASNFSMNLPTVSSVERSVLEDRRRKQRRLEKDREFACTPSMKLDDKEDDEGGLTGCSAGELSSMQQELESSWNCVKCTFLNAPDDRSCEACGGISQWRIRLREKKAAAMTAHRRCEERAQEQHQERCRDLMDLEEEEETEEEEGGKGGRVICVEQEVRPCTSTGFVSSYAHPSTAVPATEALSTSANATAKLLRATPVLIHGGGPFQLLPSDLLLHCLSFLHEASVYAGLRAVAKHWNEVAEHESLWRVLAEKDWQEPKRRACLLGGGPSRAGPRSTTPVATGAAGGKEPRTPGWPPSADGRDYARTPSASSPAFPAAPATWACSACGLRQADPFGLNCEFCSTEREIILPPSGPPAGRPTGGGEEEASCFRVVKDYQELAEIWRDSNAKAAAAASGQGRDHRRGRLSQTGEGMSGREEKAEESGAQGAELAPFQSGLLKPVSLLAASSPPTALPSSLATLTRAPASGEREREQVGPVPEAGGDPEAGVDEQARSFMAGTGRESAWEVAETRTGDFYWLYKMRALDRIWAGRWDSLHRGWEWLSNSCRVALRARLYATREQIHQRDDSLIPITSSFQKCVNKLTRRDWPLLWECMRAEFALQAEALRRDIIRHMRGSRLEEKGLVAAYRFFLQDLLKCFGVYTAWVFEVSSFFMKMNDQISGESFRATTASFGGCGALDAANTPYLPEVALVAFRDHVVQHFSILTPVLQVVEGDGGLRLAAFFQKGGDEDRGAGREAPRLGEEGGCFKGSSVPMPQQMRLLEVVEPEESEVDEKVLATRGMSFRALQAAARHGSHRRITMYLAEDLIKLGRMAEELDVMEQGSASQCEAFRRLLLKPLRATLAELRVDGVGRCEGGVRGDEIGGCDREEALEMMAMNEGGDRVGDSRGISRRLSLGRRAGHDEDGIVKRRRLV 950
            MASGIYFDLPGFDLLRPVIPASSARKHEVVGKWKPDASNFSMNLPTVSSVERSVLEDRRRKQRRLEKDREFACTPSMKLDDKEDDEGGLTGCSAGELSSMQQELESSWNCVKCTFLNAPDDRSCEACGGISQWRIRLREKKAAAMTAHRRCEERAQEQHQERCRDLMDLEEEEETEEEEGGKGGRVICVEQEVRPCTSTGFVSSYAHPSTAVPATEALSTSANATAKLLRATPVLIHGGGPFQLLPSDLLLHCLSFLHEASVYAGLRAVAKHWNEVAEHESLWRVLAEKDWQEPKRRACLLGGGPSRAGPRSTTPVATGAAGGKEPRTPGWPPSADGRDYARTPSASSPAFPAAPATWACSACGLRQADPFGLNCEFCSTEREIILPPSGPPAGRPTGGGEEEASCFRVVKDYQELAEIWRDSNAKAAAAASGQGRDHRRGRLSQTGEGMSGREEKAEESGAQGAELAPFQSGLLKPVSLLAASSPPTALPSSLATLTRAPASGEREREQVGPVPEAGGDPEAGVDEQARSFMAGTGRESAWEVAETRTGDFYWLYKMRALDRIWAGRWDSLHRGWEWLSNSCRVALRARLYATREQIHQRDDSLIPITSSFQKCVNKLTRRDWPLLWECMRAEFALQAEALRRDIIRHMRGSRLEEKGLVAAYRFFLQDLLKCFGVYTAWVFEVSSFFMKMNDQISGESFRATTASFGGCGALDAANTPYLPEVALVAFRDHVVQHFSILTPVLQVVEGDGGLRLAAFFQKGGDEDRGAGREAPRLGEEGGCFKGSSVPMPQQMRLLEVVEPEESEVDEKVLATRGMSFRALQAAARHGSHRRITMYLAEDLIKLGRMAEELDVMEQGSASQCEAFRRLLLKPLRATLAELRVDGVGRCEGGVRGDEIGGCDREEALEMMAMNEGGDRVGDSRGISRRLSLGRRAGHDEDGIVKRRRLV
Sbjct:    1 MASGIYFDLPGFDLLRPVIPASSARKHEVVGKWKPDASNFSMNLPTVSSVERSVLEDRRRKQRRLEKDREFACTPSMKLDDKEDDEGGLTGCSAGELSSMQQELESSWNCVKCTFLNAPDDRSCEACGGISQWRIRLREKKAAAMTAHRRCEERAQEQHQERCRDLMDLEEEEETEEEEGGKGGRVICVEQEVRPCTSTGFVSSYAHPSTAVPATEALSTSANATAKLLRATPVLIHGGGPFQLLPSDLLLHCLSFLHEASVYAGLRAVAKHWNEVAEHESLWRVLAEKDWQEPKRRACLLGGGPSRAGPRSTTPVATGAAGGKEPRTPGWPPSADGRDYARTPSASSPAFPAAPATWACSACGLRQADPFGLNCEFCSTEREIILPPSGPPAGRPTGGGEEEASCFRVVKDYQELAEIWRDSNAKAAAAASGQGRDHRRGRLSQTGEGMSGREEKAEESGAQGAELAPFQSGLLKPVSLLAASSPPTALPSSLATLTRAPASGEREREQVGPVPEAGGDPEAGVDEQARSFMAGTGRESAWEVAETRTGDFYWLYKMRALDRIWAGRWDSLHRGWEWLSNSCRVALRARLYATREQIHQRDDSLIPITSSFQKCVNKLTRRDWPLLWECMRAEFALQAEALRRDIIRHMRGSRLEEKGLVAAYRFFLQDLLKCFGVYTAWVFEVSSFFMKMNDQISGESFRATTASFGGCGALDAANTPYLPEVALVAFRDHVVQHFSILTPVLQVVEGDGGLRLAAFFQKGGDEDRGAGREAPRLGEEGGCFKGSSVPMPQQMRLLEVVEPEESEVDEKVLATRGMSFRALQAAARHGSHRRITMYLAEDLIKLGRMAEELDVMEQGSASQCEAFRRLLLKPLRATLAELRVDGVGRCEGGVRGDEIGGCDREEALEMMAMNEGGDRVGDSRGISRRLSLGRRAGHDEDGIVKRRRLV 950
[Close]
BLAST of EWM24328.1 vs. NCBI_GenBank
Match: gi|299472622|emb|CBN78274.1| (hypothetical protein Esi_0005_0149 [Ectocarpus siliculosus])

HSP 1 Score: 66.2402 bits (160), Expect = 2.740e-7
Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 0 
Query:   98 SSMQQELESSWNCVKCTFLNAPDDRSCEACGGISQWR------IRLREKKAAAMTAHRRCEERA--QEQHQERCRDLMDLEEEEETEEEEGGKGGRVICVEQEVRPCTSTGFVSSYAHPSTAVPATEALSTSANATAKLLRATPVLIHGGGPFQLLPSDLLLHCLSFLHEASVYAGLRAVAKHW----NEVAEHESLWRVL 286
            S ++ E  + W CV+CTF+NA  + +C  CGG ++ R       R   +K + +   RRC +R+  +E  ++   D  D E ++     EG        VE E    T     +S +  ++A PA +    +     K L+  P    GG    +LP DLLL C  +L +A     +R V   W    ++      LWR L
Sbjct:  112 SDLEAEAYADWPCVRCTFINAYTEDACGGCGGANKKRDRLLRERREEAEKLSRLQTARRCRDRSLKEEALKDVLEDSSDSENDDHNRRGEGPASHTTKPVEDETPVST-----ASASETTSAAPADDNTGRT-----KTLQQHPG-TGGGCVISILPPDLLLQCAEYLGDARSLCRVREVGLGWLLALDDREAGSRLWRPL 301
The following BLAST results are available for this feature:
BLAST of EWM24328.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105720|gb|EWM24328.1|0.000e+0100.00hypothetical protein Naga_100047g13 [Nannochlorops... [more]
gi|299472622|emb|CBN78274.1|2.740e-727.86hypothetical protein Esi_0005_0149 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6371rna6371Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications