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Properties
| Property Name | Value |
|---|
| Product | amp-dependent synthetase and ligase |
| Orig transcript id | gnl|cribi|Naga_100047g8.6069.mrna |
| Orig protein id | gnl|cribi|Naga_100047g8.6069 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:355215..358608 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6365 ID=rna6365|Name=rna6365|organism=Nannochloropsis gaditana|type=mRNA|length=1925bp
TTGACAGAAGTCGCACTTCATTGTTTCTCACAAGCGCAGGGGTCAAGGCG
GAGAAGATCCCTCAAGCATCTTGAAACCTATTCGTCACGGTATCCCTTCG
TCGGCAAACCATGTATCGTGCCATAATGAACAGCGCCCGCCTTTCTGGTG
CCAAACAAAAGGCCTTGCTTCGGGGACAGCAAGCTCGGATGCTTAATGTG
CACGAGTACATCAGTATGGATATCATGAAGGGTTACGGCATCGCAACGCC
AACGGGTCAGGTCGTGTCTTCCGTAGACGAAGCCGAGCACGTGTACGTGA
ACATGCTGAACAAGGGCGACGCGGTAGTGAAGGCACAGGTCCTGTCGGGA
GGGAGGGGCCTCGGCACCTTCAAGAACGGCTTCAAGGGCGGCGTGCACCT
AGCCACCACCCTGGGAGACGTGAAGAAGTTCACCGAGTCCATGCTGGGCC
AGCACCTGGTGACGAAACAGTCGGGACCGGCCGGCATCGTCTGCAATAAG
GTGCTGCTGGTGGAGCGCCTCTACATGCGCCGGGAGATGTACCTGTCCAT
CATGATGGATCGCACCACCCAGGGGCCCATGATCGTGGCGAGCCCCGTGG
GGGGCACCAGCATCGAGGATGTGGCGGCCTCCAACCCGGAAAAGATTTTC
ACGGAGCCGATCGACATCATGGAAGGGCTCTCGGAGGAGGCGGCCGCGGG
CATCGCCACCAAGATAGGCCTCGAACCCGGCACCGCCACCCACGCCGCCG
GCGCCGATCTGGTCAAGAGGTTGTACAAGATGATGATTGCTACCGACGCG
ACTTTGGTCGAGATTAACCCTTTGGCCGAGACTAACGACGGGCGGATAGT
GGCGGCCGACGCCAAGTTGAATTTTGACGATAACGCAGAGTACAGACAGA
AGCAGATTTTTGCCAAGCGGGACTACACGCAGGAAGACCCGCGTGAGGTG
GAGGCGCATAAATACGACCTGAACTACATCGGGCTGAGCGGCAACATCGG
CTGCATGGTGAACGGGGCGGGTCTCGCCATGTCCACCATGGATATCATCA
AGCTCAAAGGGGGAGACCCCGCCAACTTCCTGGACGTGGGGGGGGGCGCC
ACCGAGGAACAGGTGCACAAAGCCTTCGAGATCCTGAACGCGGACCCAAA
GGTGAAAACCATCCTGGTTAACATCTTCGGGGGGATCATGCGCTGCGACG
TGATCGCGGCTGGGATCCTGTCGGCGGCCAAGCAGATCGGGATGAAGAAG
CCCATCGTCATCCGCCTCCAGGGAACGAATGTGGACGAGGCCCAGAAGCT
GATCCAAGCCTCTGGCTTCCGCATGATCGTGGTGGACGAGCTGGAAGAGG
CGGCGACCAAGGCCGTGGCCATCGCGAACATAGTCAAGCAGGCGGAGGAC
GTGAAGATCGACGTGCAGGTGAATAATCCCACCTTCCTCCCGCTCTAAGC
AGGCGTCCCCGCCTCAAAAGAGCGAAAAGAGCAGTCGTTAAGCCGTTCAG
AAGTCAGGATTGGGAGCGGGATACAGGAGAGAGTGATTGTGTGGGAGAAT
GGGCAGGGGGAAGGAGGGAGGAGAAAGGAGACGGAGCACAGAGACCGGCA
GGGTCTGGGCGGTGTTCCTAGCATTTGTCTATAATCTTTGATCGCGACTG
AGTGAGAGGATGGGCGGGGTGGGAGGGGGCGATAACTGAGGCAAAGAGGA
CAGATATCAGAAAGAAAACCCGCCTTCCCCTGGAGGCGTGGGGAGGGAAA
CACCCGCCGAGTCCGCCTTGGCTTTTCCCTAACAAGACAGCTCACGCCTG
CCTCTCAGTGCCTCTTTTCTCTCCAATCTTTATACATGCCTCTTGACTCC
CCTGCAACTTCCTCAATGCTCCAAAAGCTCGTCCGAGCCCACCCTGGCCA
TGGGGTCCTCGCCGTGTCGCCTCAC back to topprotein sequence of rna6365 >rna6365-protein ID=rna6365-protein|Name=rna6365|organism=Nannochloropsis gaditana|type=polypeptide|length=889bp
MRPERLALSLIFLVWSVANVSHAFMAPLAVRLRQPLHVEHLLPARHPEPP
GGRLDTARPHEVPSGSPSRHCNAGKDSSHDYGTATLSEGRHPELIDTHWT
QGNPIQLLRQGHIPPFTWTPPLFSPSNATAKKTQDDKSGKSFVDTAALER
AIASPGLRSVPGMWTVLAEHCGAWNMLTDPSHSVPPPSLAASSSSTPLSL
TFAQAHDVIRLAAAGLHALNLRQGDHIAFFSENSARWLLAEQGASLNGCP
TAVRGASASVEELQYIYRTADCKAVVLQDLSLLRKLREAGGLSSKHGPPR
LVIVLRPPEGMRERQGVGSGGGEGETEGGLGPLSVATLSEEPDCGPTVSL
EELLALGARHLPHYLPPDLRPSDLHTLVFTSGTTGRPKGVMLSHANLLHQ
VRHIDLGRNPLPGDVVLSLLPCWHIFERSSELFALARGASLVYSSVRAFK
ADLQRYRPHYLIVVPRLLENVHRSIKDKLSAGSPVRRRLVATLSLLSLLY
TRALKQALGLVVRRPASHPPTGSRRHLFLASFVSTLRRLAYRPAAALATC
FLLPGALLADLLVWKKVRQALGGRQKLVVSGGSALARYLEEFYDAAGIPV
VSGYGLTETSPVIAVRRAGRLRNLVDGGVVGFPPKEVELEIRALEDEREG
APEKRRQERTRKEVGSAEGKVGIVFTRGPQVMQGYYKDPSSTRKAVGDDG
WLNTGDLGYLNPGTGDLVLTGRAKDLIVLSNGENVEPQPIEDAVVERCAT
VEQCLVLGHDKRQLSALVVVSPQGLAARGLLPPVEAERLDALVGPSAVLL
GCQGDKTALDMEADRLNADESLVRAVQKEIAAALTQDPEEFRAWEQIKNL
HLLLAPFNVQSGLLTQTLKVKRVTVQDYYKEAIDRLYAQ back to topmRNA from alignment at CM002468.1:355215..358608- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna6365 ID=rna6365|Name=rna6365|organism=Nannochloropsis gaditana|type=mRNA|length=3394bp|location=Sequence derived from alignment at CM002468.1:355215..358608- (Nannochloropsis gaditana)
CGCAAAAAGCGTTTCCCCAAGCTGTTCTCACTGCATTTGTGTCGCACGCC
TAAGAATATCTATGCGTTGTACTATAAACAGATATCTTTTAACACACACA
CAGTCTTACGTCAAAGCGCCTGTGAGGTGGACGTTTTGAGCGGGTACTCG
AGCTCATCGACCTGGCGCTTCCGACGCGAGTCGCTCACGCCATCGACCAC
CTCAAGCAACACGACTGTCTTCAACCAAGCCAAATGTGAGCAAAAGATAA
GCCATACGGTCCATATTTGAACGCCTATGAGAAGCCATACGCAATAATTT
ATAGTCTTATTCATTTCTTCTCTATGTATGTACGCACAGAAGGTCTTTTA
TATATGATTTATTGGGCCTTTTCACCTCCGTTCCACTCGTAGAACCATAA
CACATACACAACCATGCGACCCGAAAGGTTGGCCTTGTCCCTCATTTTCT
TGGTGTGGAGCGTCGCAAACGTAAGCCATGCGTTCATGGCCCCTTTAGCG
GTGCGCCTGAGGCAACCTCTACATGTGGAGCACCTGCTCCCAGCCCGTCA
CCCTGAGCCTCCGGGAGGCCGTCTCGATACTGCCCGCCCCCACGAGGTGC
CCTCGGGGAGCCCCTCCCGTCACTGCAACGCTGGCAAAGACAGCAGCCAT
GACTACGGGACGGCTACCCTTTCGGAGGGTCGGCACCCGGAGCTTATCGA
TACTCACTGGACACAAGGCAATCCTATCCAATTGCTTCGACAAGGCCATA
TTCCCCCCTTCACCTGGACCCCCCCCCTTTTCTCTCCAAGCAACGCCACC
GCCAAGAAGACGCAGGACGACAAAAGCGGCAAATCCTTTGTCGATACTGC
TGCTTTAGAGAGGGCGATCGCCTCACCGGGCCTCAGGTCGGTGCCGGGCA
TGTGGACCGTCCTCGCCGAGCACTGCGGAGCCTGGAACATGCTCACGGAC
CCCTCCCATTCCGTCCCACCTCCTTCCCTTGCGGCGTCCTCCTCCTCTAC
GCCTTTGTCCCTCACCTTTGCCCAAGCCCATGACGTCATCCGCCTGGCTG
CCGCCGGCCTCCACGCTCTGAATCTGCGTCAGGGTGACCACATCGCCTTC
TTCTCCGAGAACAGCGCCCGCTGGCTCTTGGCCGAGCAAGGCGCCTCCCT
TAACGGCTGCCCGACAGCGGTACGCGGGGCCTCCGCCTCTGTGGAGGAGC
TTCAGTACATCTACCGCACGGCCGACTGCAAGGCGGTGGTGCTGCAAGAC
CTTAGCCTCCTTCGCAAGCTCAGGGAGGCCGGGGGGCTCTCCTCCAAGCA
CGGCCCGCCGCGCCTGGTCATCGTCCTCCGCCCTCCTGAGGGCATGAGAG
AAAGACAAGGAGTGGGTTCCGGCGGCGGGGAGGGGGAGACGGAGGGCGGT
CTGGGGCCTCTCTCGGTCGCCACCCTCTCTGAGGAGCCGGATTGCGGTCC
CACGGTCAGCCTAGAGGAGCTTCTGGCCCTGGGCGCACGGCATTTGCCCC
ACTACCTCCCCCCCGACCTCCGCCCCTCAGACCTCCACACACTCGTCTTC
ACCAGCGGCACCACCGGCAGGCCCAAGGGCGTCATGCTCTCCCACGCCAA
CCTCCTCCACCAGGTCCGGCACATCGACCTCGGGCGCAACCCTCTCCCCG
GTGACGTCGTCCTTTCCCTCCTACCCTGCTGGCACATCTTTGAACGCTCT
TCAGAGCTCTTCGCCCTGGCCCGCGGGGCTTCTCTGGTCTACTCCTCCGT
CCGCGCTTTCAAAGCCGACCTCCAGCGATACCGGCCGCACTACCTGATCG
TCGTCCCCCGCCTCCTGGAGAACGTGCACAGGTCCATCAAAGACAAGCTT
TCCGCCGGTTCCCCCGTCCGCCGACGCCTTGTCGCCACCCTTTCCCTCCT
CTCCCTCCTCTACACACGCGCTCTCAAACAGGCCTTGGGCCTGGTCGTCC
GCCGTCCGGCCTCCCACCCGCCCACCGGGTCCCGGCGGCATCTCTTTCTC
GCCTCGTTCGTCTCCACACTTAGACGCCTCGCGTACAGGCCCGCGGCCGC
CCTGGCCACGTGCTTTCTCCTCCCTGGCGCCCTCCTCGCAGATTTGTTGG
TCTGGAAAAAAGTGCGGCAGGCCCTTGGGGGGCGTCAGAAGCTGGTGGTG
TCCGGCGGCTCGGCACTGGCACGCTACCTAGAGGAGTTCTACGACGCCGC
GGGCATCCCCGTGGTCTCAGGGTACGGTTTGACGGAGACCAGCCCGGTGA
TTGCCGTGCGACGGGCGGGGCGGCTGCGAAACCTGGTAGACGGGGGGGTG
GTGGGTTTCCCGCCCAAGGAGGTGGAGCTGGAGATCCGGGCATTGGAGGA
TGAGAGGGAGGGGGCTCCAGAGAAGAGAAGACAGGAGAGGACGCGGAAGG
AGGTGGGTAGCGCGGAAGGAAAAGTGGGGATAGTGTTCACGCGGGGCCCT
CAGGTGATGCAGGGCTACTACAAGGACCCAAGCAGCACGCGCAAGGCGGT
AGGCGATGACGGCTGGCTTAACACGGGCGACCTAGGGTACCTGAATCCTG
GAACAGGGGACCTGGTCCTGACCGGGCGCGCCAAGGATCTGATTGTGCTG
AGCAACGGTGAAAACGTGGAGCCGCAACCCATCGAAGACGCCGTGGTGGA
GCGTTGTGCCACGGTCGAGCAATGCTTGGTCCTCGGTCACGACAAGCGGC
AGCTCAGCGCACTGGTGGTTGTGAGCCCTCAGGGGCTGGCCGCGCGCGGC
TTGTTGCCGCCTGTGGAAGCAGAGCGACTGGATGCATTGGTGGGGCCTTC
GGCCGTGCTTTTAGGGTGCCAAGGGGACAAGACCGCGCTGGACATGGAGG
CCGACAGGCTGAACGCGGACGAGTCGCTCGTGAGGGCGGTACAGAAAGAA
ATCGCCGCCGCCTTGACGCAAGACCCAGAGGAGTTTCGTGCATGGGAGCA
GATTAAAAACCTGCATTTGTTGCTGGCCCCGTTCAACGTGCAGTCGGGCT
TACTAACCCAGACCTTAAAGGTGAAGAGGGTGACTGTGCAAGATTACTAT
AAGGAGGCCATCGACAGGCTGTACGCGCAGTAGCTGGAAAGCCCAACGCT
GGCATTATATAAGAGACGATGTTGATAAAACCAATTGCATATAGTGTAAG
CGGGAACGAAAGAATGATGAAGAATCTCATTTAAGGACAGATGAAACCAT
TTTAAAGGCGCGCATGGCACGCGACGGATTGGCGTGGAACTTGATGCAAC
GAAGATCGCGTGATCGTTTACAGGTTCCAAAACACGCATTATGTGAGATC
CATTCATAACCCACCGATCGTCTTGTAAGATACTCGTTCGAAATGTGAAA
AGAATCGTCTATCACGAAAGGAGAAGGAACGCGAAGTCTACATC back to topCoding sequence (CDS) from alignment at CM002468.1:355215..358608- >rna6365 ID=rna6365|Name=rna6365|organism=Nannochloropsis gaditana|type=CDS|length=2670bp|location=Sequence derived from alignment at CM002468.1:355215..358608- (Nannochloropsis gaditana)
ATGCGACCCGAAAGGTTGGCCTTGTCCCTCATTTTCTTGGTGTGGAGCGT
CGCAAACGTAAGCCATGCGTTCATGGCCCCTTTAGCGGTGCGCCTGAGGC
AACCTCTACATGTGGAGCACCTGCTCCCAGCCCGTCACCCTGAGCCTCCG
GGAGGCCGTCTCGATACTGCCCGCCCCCACGAGGTGCCCTCGGGGAGCCC
CTCCCGTCACTGCAACGCTGGCAAAGACAGCAGCCATGACTACGGGACGG
CTACCCTTTCGGAGGGTCGGCACCCGGAGCTTATCGATACTCACTGGACA
CAAGGCAATCCTATCCAATTGCTTCGACAAGGCCATATTCCCCCCTTCAC
CTGGACCCCCCCCCTTTTCTCTCCAAGCAACGCCACCGCCAAGAAGACGC
AGGACGACAAAAGCGGCAAATCCTTTGTCGATACTGCTGCTTTAGAGAGG
GCGATCGCCTCACCGGGCCTCAGGTCGGTGCCGGGCATGTGGACCGTCCT
CGCCGAGCACTGCGGAGCCTGGAACATGCTCACGGACCCCTCCCATTCCG
TCCCACCTCCTTCCCTTGCGGCGTCCTCCTCCTCTACGCCTTTGTCCCTC
ACCTTTGCCCAAGCCCATGACGTCATCCGCCTGGCTGCCGCCGGCCTCCA
CGCTCTGAATCTGCGTCAGGGTGACCACATCGCCTTCTTCTCCGAGAACA
GCGCCCGCTGGCTCTTGGCCGAGCAAGGCGCCTCCCTTAACGGCTGCCCG
ACAGCGGTACGCGGGGCCTCCGCCTCTGTGGAGGAGCTTCAGTACATCTA
CCGCACGGCCGACTGCAAGGCGGTGGTGCTGCAAGACCTTAGCCTCCTTC
GCAAGCTCAGGGAGGCCGGGGGGCTCTCCTCCAAGCACGGCCCGCCGCGC
CTGGTCATCGTCCTCCGCCCTCCTGAGGGCATGAGAGAAAGACAAGGAGT
GGGTTCCGGCGGCGGGGAGGGGGAGACGGAGGGCGGTCTGGGGCCTCTCT
CGGTCGCCACCCTCTCTGAGGAGCCGGATTGCGGTCCCACGGTCAGCCTA
GAGGAGCTTCTGGCCCTGGGCGCACGGCATTTGCCCCACTACCTCCCCCC
CGACCTCCGCCCCTCAGACCTCCACACACTCGTCTTCACCAGCGGCACCA
CCGGCAGGCCCAAGGGCGTCATGCTCTCCCACGCCAACCTCCTCCACCAG
GTCCGGCACATCGACCTCGGGCGCAACCCTCTCCCCGGTGACGTCGTCCT
TTCCCTCCTACCCTGCTGGCACATCTTTGAACGCTCTTCAGAGCTCTTCG
CCCTGGCCCGCGGGGCTTCTCTGGTCTACTCCTCCGTCCGCGCTTTCAAA
GCCGACCTCCAGCGATACCGGCCGCACTACCTGATCGTCGTCCCCCGCCT
CCTGGAGAACGTGCACAGGTCCATCAAAGACAAGCTTTCCGCCGGTTCCC
CCGTCCGCCGACGCCTTGTCGCCACCCTTTCCCTCCTCTCCCTCCTCTAC
ACACGCGCTCTCAAACAGGCCTTGGGCCTGGTCGTCCGCCGTCCGGCCTC
CCACCCGCCCACCGGGTCCCGGCGGCATCTCTTTCTCGCCTCGTTCGTCT
CCACACTTAGACGCCTCGCGTACAGGCCCGCGGCCGCCCTGGCCACGTGC
TTTCTCCTCCCTGGCGCCCTCCTCGCAGATTTGTTGGTCTGGAAAAAAGT
GCGGCAGGCCCTTGGGGGGCGTCAGAAGCTGGTGGTGTCCGGCGGCTCGG
CACTGGCACGCTACCTAGAGGAGTTCTACGACGCCGCGGGCATCCCCGTG
GTCTCAGGGTACGGTTTGACGGAGACCAGCCCGGTGATTGCCGTGCGACG
GGCGGGGCGGCTGCGAAACCTGGTAGACGGGGGGGTGGTGGGTTTCCCGC
CCAAGGAGGTGGAGCTGGAGATCCGGGCATTGGAGGATGAGAGGGAGGGG
GCTCCAGAGAAGAGAAGACAGGAGAGGACGCGGAAGGAGGTGGGTAGCGC
GGAAGGAAAAGTGGGGATAGTGTTCACGCGGGGCCCTCAGGTGATGCAGG
GCTACTACAAGGACCCAAGCAGCACGCGCAAGGCGGTAGGCGATGACGGC
TGGCTTAACACGGGCGACCTAGGGTACCTGAATCCTGGAACAGGGGACCT
GGTCCTGACCGGGCGCGCCAAGGATCTGATTGTGCTGAGCAACGGTGAAA
ACGTGGAGCCGCAACCCATCGAAGACGCCGTGGTGGAGCGTTGTGCCACG
GTCGAGCAATGCTTGGTCCTCGGTCACGACAAGCGGCAGCTCAGCGCACT
GGTGGTTGTGAGCCCTCAGGGGCTGGCCGCGCGCGGCTTGTTGCCGCCTG
TGGAAGCAGAGCGACTGGATGCATTGGTGGGGCCTTCGGCCGTGCTTTTA
GGGTGCCAAGGGGACAAGACCGCGCTGGACATGGAGGCCGACAGGCTGAA
CGCGGACGAGTCGCTCGTGAGGGCGGTACAGAAAGAAATCGCCGCCGCCT
TGACGCAAGACCCAGAGGAGTTTCGTGCATGGGAGCAGATTAAAAACCTG
CATTTGTTGCTGGCCCCGTTCAACGTGCAGTCGGGCTTACTAACCCAGAC
CTTAAAGGTGAAGAGGGTGACTGTGCAAGATTACTATAAGGAGGCCATCG
ACAGGCTGTACGCGCAGTAG back to top
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