rna6362, rna6362 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6362
Unique Name	rna6362
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2045
Alignment location	CM002468.1:349761..351833 +

Link to JBrowse

Properties


Property Name	Value
Product	pre-mrna-splicing factor slu7
Orig transcript id	gnl\|cribi\|Naga_100047g6.6077.mrna
Orig protein id	gnl\|cribi\|Naga_100047g6.6077
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:349761..351833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g6	gene6148	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6362	rna6362-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24314.1	cds6347	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:349761..351833+
coding sequence from alignment at CM002468.1:349761..351833+

mRNA sequence

>rna6362 ID=rna6362|Name=rna6362|organism=Nannochloropsis gaditana|type=mRNA|length=2045bp
CGCTCCGGTCATCCTCAGAATTCCATCGAGCTGCTTATTCCTTCATGTCC
CGCGCATCCCGTGCGGGGCCTTAATAAAACTGCCCTCATGTCTTGACGAT
GAGTTTAATTTTTGTACCGTCTAAACGCCACCCCGCTACCCATCACGTCT
TTGACGAACGTGGGATTGACCTACAGATACCTTCACTCTCAGAAACGAGG
CCACGAGAAGACAGGATGGCCGCCGAGGACAGCATGGAAACTGATGCGCC
TGCGGCAACGGAAGAGCCTAAGTCGTCTATAACAACGTTGGATGGCCTGA
AAAAGAACGTCACCCTCCTCCAGACAGCCGTACAAACCTCGCAACTACGC
CTCATCAATCGTGTCCTCCGTAACAACACTCCCTTCCGCCGCAACCTACG
ACCCTCTATCCTTTCCGAGGCCATTTCCTACTATCTGCCCCAGGACGAGC
CCCTCAAAGCCCTGGGCCTCGCCATTCTCGCTGACCTTCCCGATGACCCC
CTTCCTCCTCCTCCTCCTCCTCCTGCATCCTCTCTTCCTTCCACATCCTC
CTCCACCATGGAGATGGACAAGGATGAGAAGAGCGGCAGTCCCTCGCAGG
CATCGGCCGGCAAGAAGGCTTTTCCTGCCCCCCTCTTCCTCCCTGAGACC
ACGACCTACCTCCTCCTCCTCGTCCTCACCACAGCCATGCGCCTCCACCG
CCTAGAACAAGCCCATTCTGTGGCCACCGCCCTCCTGCCCTACCTCCGGA
AGCAGAATCGGCGTACCTTGGACGCTCTGGCCGCCAAGGGCTACTTCTAC
CTGGCCCTGACACAGGAGCGCCGGTCTCAGTCCCTCGCACCCCTGCGGCC
CCTCTTCGTCGCTCTCCACCGCACAGCCTGCCTCCACCACGACGAGATGG
GCCAGGCCACCCTCCTAAACCTCCTGCTTCGGAGCCTGCTGGCTGATAAC
CTTATCGAGCAGGCGGGCAATCTCATCGCGCGCACCAGCTTCCCCGAGCA
TGCGAGCAATAACCAGCTCTGCAGGTTCCTGTACTACGTGGGGCGCGTGC
GGGCCACCCAGCTCGACTACACGGACGCCTTCTCCAAGTTGAACCAGGCG
GTGCGCAAGGCCCCCGCGGACGAGGGCAGGGCCGCACTGGGCTTCCGACG
GGAGGTGACCAAGCTCCTCGTGATCGTGCAGCTCCTCCTGGGAGACATCC
CGGAGCGCGCCACCTTCGACCAGCCCGTCCTCCGCCGCTCCCTCCAGCCC
TACCTGGCCCTGACCACCGCGGTGCGGCTCGGGGACCTGCTCGAGTTCGA
GAAGACAGTGACGGCCCATGCCGCCATGTTCAAGAAGGACAAGACGCACA
CGCTCATCCTCCGCCTAGGCCACAACGTGATCAAGACCGGCCTGAGGAAA
ATCTCCCTTTCCTATTCCCGCATCTCCCTCGCGGAGATTGCCGGGAAGCT
GCACCTGGACGGCCCCGCCTCTGCGGAGTTCGTTTGCGCCAAGGCCATCA
ACGACGGCGTCATCGACGCCGTCCTCGATCACGAGGCCGGCTACCTCCAG
TCGCGGGACGTGAACGACATCTACTCCACCATGGAGCCCCAACAGGCCTT
CCACAAGCGCATCACCTTCTGCCTGGACGTGCACAATGAGGCCGTCAAGT
CGCTACGCTACCCGGACGTGCCCACTTACGGTGCCAAGAGGGGGGACGGG
CAAGGGGAGGAAAAGGGAGAGGAGGAGAAGACGGAGGAGGAGCTGGTGCA
AGAGTTGGGAGAAGATATGGAGGATGAGTTTTAATGGAGGAAACGCGGGA
AGGAGGGAATCCCGGGAAGAGGGGAATTGCACTGGAGAGGGGAGTGAAAG
AGGGAAACTCTGCCGGTGGGGCGTCGTGGTGATGGGTAGGGGGGAAGAAA
GGATTGGGGGTGGGGCGTGTAGAGGAGGGAGGACGCAAGAGTAAGGGCGA
GGCACATTGCGCAGAGGCTGGTTGAAGTAAAACGAGGCGGACGGGGGGTA
GATGCTTGTAAGGCATGAAAGAAGGAAGATGCATGCCCCGTCCCA

protein sequence of rna6362

>rna6362-protein ID=rna6362-protein|Name=rna6362|organism=Nannochloropsis gaditana|type=polypeptide|length=584bp
MASGLSEYKKREEEKKARQAGNLAPEIDAASGKMINPHNPEYITKRPWYL
GESGPSLNHHARQRDDSILSLQETEEILARQPKKFLGRATVFRKGACENC
GAMTHKKKDCVERPRSLGKTAKVSGMDIAPDEASRGVQEGKLGWDGKRDQ
WAGYRAEDHERVIERYAQMEEERKRQAIARKAEKEREKEEKRKEKEAARL
KRREEKVAAKRARDSDYDSDEEDEDEGVREYLLKDKDNKDFQGRVARQGG
VGGAQMKVSVRNLRIREDTAKYLRNLDPNSAYYDPKTRAMRDNPLPGTHP
EELAYAGDNYVRTTGDTVALARMQVFALEAQEEGIDVHAEANPTAAILAK
KRFEEAQGAEKEEARKRVMEAYGAEKYSKKPDPRLLLGQTEAWTEYSKDG
RLLKGAPRAVVRSKYEEDVQVNNHTTVWGSYYEKKSGKWGYGCCHSLIKQ
SYCTGEEGRRANEVQGTASGNGRSREGEASGEGEDGKEERRKKSKLTGEM
TTRAELYGTEVSGGLELDAKKLKDAVQRQRAFQEEKVELDERRRGYNTKG
EGEVTKEEMEAYRLVRRHGEDPMARVGSDELLEH

mRNA from alignment at CM002468.1:349761..351833+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6362 ID=rna6362|Name=rna6362|organism=Nannochloropsis gaditana|type=mRNA|length=2073bp|location=Sequence derived from alignment at CM002468.1:349761..351833+ (Nannochloropsis gaditana)
ATGGCATCTGGACTGTCAGAATATaaaaagcgggaggaggaaaagaaggc
gcgACAAGCGGGGAACCTTGCCCCTGAAATCGATGCGGCGTCGGGAAAAA
TGATAAATCCGCACAACCCCGAATACATCACGAAACGTCCTTGGTACTTG
GGGGAGTCTGGACCATCTTTGAACCATCATGCCCGACAGCGGGACGACAG
CATTTTAAGCCTACAGGAGACGGAAGAGATCCTGGCACGGCAACCGAAGA
AATTCCTGGGCCGGGCGACGGTGTTTCGGAAAGGAGCTTGCGAGAACTGC
GGGGCCATGACACACAAAAAGAAAGACTGCGTGGAAAGACCACGATCCTT
GGGGAAGACGGCCAAGGTGAGCGGCATGGACATTGCGCCAGACGAGGCCT
CGCGCGGGGTGCAAGAGGGGAAGCTGGGGTGGGACGGGAAGCGGGATCAG
TGGGCGGGCTACCGGGCTGAGGATCACGAGAGGGTGATCGAGCGGTACGC
GcagatggaagaggagagaaagcgaCAGGCCATCGcgcggaaggcggaga
aagaacgtgagaaggaggagaaaaggaaagagaaggaggcggcgaggttg
aagaggagggaagagaaggttgCCGCGAAGAGGGCCCGGCAGGCGGCCGC
GGGGGATAAGACGGCGGAGCAGGGAAGCAAGGCGATCAATCAAGAGAGCA
GAAATGatggggaggtgggggagggcgaagagggggaggaggagggggag
gaagggagcgagagtGAGAGCGGCGGTAGCGAGGCCAGCGACAGTGACTC
GGACTACGactcggacgaggaggatgaggacgaaggcGTGAGGGAGTACC
TGCTCAAAGACAAGGACAACAAGGACTTCCAAGGCCGCGTGGCCCGGCaa
ggcggggtgggaggcgcgCAGATGAAGGTGTCGGTCCGGAACCTGCGGAT
CCGGGAGGACACGGCCAAGTACCTCCGCAATCTGGACCCGAACTCGGCCT
ACTACGACCCGAAAACGCGGGCCATGCGCGACAACCCGCTGCCGGGCACG
CACCCTGAGGAGCTGGCGTACGCGGGGGACAACTACGTGCGGACGACGGG
TGACACGGTGGCGCTGGCCCGGATGCAGGTATTCGCCCtcgaggcgcagg
aggagggcatcgaCGTGCACGCAGAGGCGAACCCGACGGCGGCCATCCTG
GCCAAGAAGAGATTCGAGGAGGCGCAAGgtgcggagaaggaggaggcgag
aaagCGCGTGATGGAGGCGTACGGGGCGGAGAAGTACAGGTGAGGGGGGG
accggagggaggctggcagTACGGAGGCGGAAGCTTGGGGGGGTAAAGTG
ACGGTAGGGCGTCTCGTAGCGCTTGTGCTCGATGCTTGTGTTCGGTGCCG
GCTGTTGGGTGATGTGTCGGCTCTCACCCATGCTCCTTCATGACTGTACA
GCAAAAAGCCcgacccccgcctcctcctcggacagACGGAGGCCTGGACC
GAGTACAGCAAGGACGGGCGGCTTCTCAAGGGGGCGCCGCGCGCGGTGGT
GCGGAGCaagtacgaggaggacgtaCAGGTGAACAACCACACGACCGTCT
GGGGCTCGTACTACGAGAAAAAGTCGGGAAAGTGGGGGTACGGGTGCTGC
CACTCGTTGATCAAGCAGAGCTACTgcacgggcgaggagggccggagggc
gaACGAGGTACAGGGGACGGCCAgcgggaatgggaggagtcgggagggag
aggcgagcggagagggggaggacgggaaggaggagaggagaaaaaagagc
aAGTTGACAGGGGAGATGACGACGCGCGCCGAGCTCTACGGGACCGAGGT
gtcgggggggctggagcTAGACGCCAAGAAGCTCAAGGACGCGGTGCAAC
GGCAGAGGGCGTttcaggaggagaaggtggagctggacgagaggcggagg
gggtacAACACgaagggtgagggggaggtgacgaaagaggagatggaggc
ctACCGCCTTGTGAGGCGACACGGCGAGGACCCCATGGCCAGGGTGGGCT
CGGACGAGCTTTTGGAGCATTGA

Coding sequence (CDS) from alignment at CM002468.1:349761..351833+

>rna6362 ID=rna6362|Name=rna6362|organism=Nannochloropsis gaditana|type=CDS|length=5265bp|location=Sequence derived from alignment at CM002468.1:349761..351833+ (Nannochloropsis gaditana)
ATGGCATCTGGACTGTCAGAATATaaaaagcgggaggaggaaaagaaggc
gcgACAAGCGGGGAACCTTGCCCCTGAAATCGATGCGGCGTCGGGAAAAA
TGATAAATCCGCACAACCCCGAATACATCACGAAACGTCCTTGGTACTTG
GGGGAGTCTGGACCATCTTTGAACCATCATGCCCGACAGCGGGACGACAG
CATTTTAAGCCTACAGGAGACGGAAGAGATCCTGGCACGGCAACCGAAGA
AATTCCTGGGCCGGGCGACGGTGTTTCGGAAAGGAGCTTGCGAGAACTGC
GGGGCCATGACACACAAAAAGAAAGACTGCGTGGAAAGACCACGATCCTT
GGGGAAGACGGCCAAGGTGAGCGGCATGGACATTGCGCCAGACGAGGCCT
CGCGCGGGGTGCAAGAGGGGAAGCTGGGGTGGGACGGGAAGCGGGATCAG
TGGGCGGGCTACCGGGCTGAGGATCACGAGAGGGTGATCGAGCGGTACGC
GcagatggaagaggagagaaagcgaCAGGCCATCGcgcggaaggcggaga
aagaacgtgagaaggaggagaaaaggaaagagaaggaggcggcgaggttg
aagaggagggaagagaaggttgCCGCGAAGAGGGCCCGTGACTCGGACTA
CGactcggacgaggaggatgaggacgaaggcGTGAGGGAGTACCTGCTCA
AAGACAAGGACAACAAGGACTTCCAAGGCCGCGTGGCCCGGCaaggcggg
gtgggaggcgcgCAGATGAAGGTGTCGGTCCGGAACCTGCGGATCCGGGA
GGACACGGCCAAGTACCTCCGCAATCTGGACCCGAACTCGGCCTACTACG
ACCCGAAAACGCGGGCCATGCGCGACAACCCGCTGCCGGGCACGCACCCT
GAGGAGCTGGCGTACGCGGGGGACAACTACGTGCGGACGACGGGTGACAC
GGTGGCGCTGGCCCGGATGCAGGTATTCGCCCtcgaggcgcaggaggagg
gcatcgaCGTGCACGCAGAGGCGAACCCGACGGCGGCCATCCTGGCCAAG
AAGAGATTCGAGGAGGCGCAAGgtgcggagaaggaggaggcgagaaagCG
CGTGATGGAGGCGTACGGGGCGGAGAAGTACAGCAAAAAGCCcgaccccc
gcctcctcctcggacagACGGAGGCCTGGACCGAGTACAGCAAGGACGGG
CGGCTTCTCAAGGGGGCGCCGCGCGCGGTGGTGCGGAGCaagtacgagga
ggacgtaCAGGTGAACAACCACACGACCGTCTGGGGCTCGTACTACGAGA
AAAAGTCGGGAAAGTGGGGGTACGGGTGCTGCCACTCGTTGATCAAGCAG
AGCTACTgcacgggcgaggagggccggagggcgaACGAGGTACAGGGGAC
GGCCAgcgggaatgggaggagtcgggagggagaggcgagcggagaggggg
aggacgggaaggaggagaggagaaaaaagagcaAGTTGACAGGGGAGATG
ACGACGCGCGCCGAGCTCTACGGGACCGAGGTgtcgggggggctggagcT
AGACGCCAAGAAGCTCAAGGACGCGGTGCAACGGCAGAGGGCGTttcagg
aggagaaggtggagctggacgagaggcggagggggtacAACACgaagggt
gagggggaggtgacgaaagaggagatggaggcctACCGCCTTGTGAGGCG
ACACGGCGAGGACCCCATGGCCAGGGTGGGCTCGGACGAGCTTTTGGAGC
ATTGAATGGCATCTGGACTGTCAGAATATaaaaagcgggaggaggaaaag
aaggcgcgACAAGCGGGGAACCTTGCCCCTGAAATCGATGCGGCGTCGGG
AAAAATGATAAATCCGCACAACCCCGAATACATCACGAAACGTCCTTGGT
ACTTGGGGGAGTCTGGACCATCTTTGAACCATCATGCCCGACAGCGGGAC
GACAGCATTTTAAGCCTACAGGAGACGGAAGAGATCCTGGCACGGCAACC
GAAGAAATTCCTGGGCCGGGCGACGGTGTTTCGGAAAGGAGCTTGCGAGA
ACTGCGGGGCCATGACACACAAAAAGAAAGACTGCGTGGAAAGACCACGA
TCCTTGGGGAAGACGGCCAAGGTGAGCGGCATGGACATTGCGCCAGACGA
GGCCTCGCGCGGGGTGCAAGAGGGGAAGCTGGGGTGGGACGGGAAGCGGG
ATCAGTGGGCGGGCTACCGGGCTGAGGATCACGAGAGGGTGATCGAGCGG
TACGCGcagatggaagaggagagaaagcgaCAGGCCATCGcgcggaaggc
ggagaaagaacgtgagaaggaggagaaaaggaaagagaaggaggcggcga
ggttgaagaggagggaagagaaggttgCCGCGAAGAGGGCCCGTGACTCG
GACTACGactcggacgaggaggatgaggacgaaggcGTGAGGGAGTACCT
GCTCAAAGACAAGGACAACAAGGACTTCCAAGGCCGCGTGGCCCGGCaag
gcggggtgggaggcgcgCAGATGAAGGTGTCGGTCCGGAACCTGCGGATC
CGGGAGGACACGGCCAAGTACCTCCGCAATCTGGACCCGAACTCGGCCTA
CTACGACCCGAAAACGCGGGCCATGCGCGACAACCCGCTGCCGGGCACGC
ACCCTGAGGAGCTGGCGTACGCGGGGGACAACTACGTGCGGACGACGGGT
GACACGGTGGCGCTGGCCCGGATGCAGGTATTCGCCCtcgaggcgcagga
ggagggcatcgaCGTGCACGCAGAGGCGAACCCGACGGCGGCCATCCTGG
CCAAGAAGAGATTCGAGGAGGCGCAAGgtgcggagaaggaggaggcgaga
aagCGCGTGATGGAGGCGTACGGGGCGGAGAAGTACAGCAAAAAGCCcga
cccccgcctcctcctcggacagACGGAGGCCTGGACCGAGTACAGCAAGG
ACGGGCGGCTTCTCAAGGGGGCGCCGCGCGCGGTGGTGCGGAGCaagtac
gaggaggacgtaCAGGTGAACAACCACACGACCGTCTGGGGCTCGTACTA
CGAGAAAAAGTCGGGAAAGTGGGGGTACGGGTGCTGCCACTCGTTGATCA
AGCAGAGCTACTgcacgggcgaggagggccggagggcgaACGAGGTACAG
GGGACGGCCAgcgggaatgggaggagtcgggagggagaggcgagcggaga
gggggaggacgggaaggaggagaggagaaaaaagagcaAGTTGACAGGGG
AGATGACGACGCGCGCCGAGCTCTACGGGACCGAGGTgtcgggggggctg
gagcTAGACGCCAAGAAGCTCAAGGACGCGGTGCAACGGCAGAGGGCGTt
tcaggaggagaaggtggagctggacgagaggcggagggggtacAACACga
agggtgagggggaggtgacgaaagaggagatggaggcctACCGCCTTGTG
AGGCGACACGGCGAGGACCCCATGGCCAGGGTGGGCTCGGACGAGCTTTT
GGAGCATTGAATGGCATCTGGACTGTCAGAATATaaaaagcgggaggagg
aaaagaaggcgcgACAAGCGGGGAACCTTGCCCCTGAAATCGATGCGGCG
TCGGGAAAAATGATAAATCCGCACAACCCCGAATACATCACGAAACGTCC
TTGGTACTTGGGGGAGTCTGGACCATCTTTGAACCATCATGCCCGACAGC
GGGACGACAGCATTTTAAGCCTACAGGAGACGGAAGAGATCCTGGCACGG
CAACCGAAGAAATTCCTGGGCCGGGCGACGGTGTTTCGGAAAGGAGCTTG
CGAGAACTGCGGGGCCATGACACACAAAAAGAAAGACTGCGTGGAAAGAC
CACGATCCTTGGGGAAGACGGCCAAGGTGAGCGGCATGGACATTGCGCCA
GACGAGGCCTCGCGCGGGGTGCAAGAGGGGAAGCTGGGGTGGGACGGGAA
GCGGGATCAGTGGGCGGGCTACCGGGCTGAGGATCACGAGAGGGTGATCG
AGCGGTACGCGcagatggaagaggagagaaagcgaCAGGCCATCGcgcgg
aaggcggagaaagaacgtgagaaggaggagaaaaggaaagagaaggaggc
ggcgaggttgaagaggagggaagagaaggttgCCGCGAAGAGGGCCCGTG
ACTCGGACTACGactcggacgaggaggatgaggacgaaggcGTGAGGGAG
TACCTGCTCAAAGACAAGGACAACAAGGACTTCCAAGGCCGCGTGGCCCG
GCaaggcggggtgggaggcgcgCAGATGAAGGTGTCGGTCCGGAACCTGC
GGATCCGGGAGGACACGGCCAAGTACCTCCGCAATCTGGACCCGAACTCG
GCCTACTACGACCCGAAAACGCGGGCCATGCGCGACAACCCGCTGCCGGG
CACGCACCCTGAGGAGCTGGCGTACGCGGGGGACAACTACGTGCGGACGA
CGGGTGACACGGTGGCGCTGGCCCGGATGCAGGTATTCGCCCtcgaggcg
caggaggagggcatcgaCGTGCACGCAGAGGCGAACCCGACGGCGGCCAT
CCTGGCCAAGAAGAGATTCGAGGAGGCGCAAGgtgcggagaaggaggagg
cgagaaagCGCGTGATGGAGGCGTACGGGGCGGAGAAGTACAGCAAAAAG
CCcgacccccgcctcctcctcggacagACGGAGGCCTGGACCGAGTACAG
CAAGGACGGGCGGCTTCTCAAGGGGGCGCCGCGCGCGGTGGTGCGGAGCa
agtacgaggaggacgtaCAGGTGAACAACCACACGACCGTCTGGGGCTCG
TACTACGAGAAAAAGTCGGGAAAGTGGGGGTACGGGTGCTGCCACTCGTT
GATCAAGCAGAGCTACTgcacgggcgaggagggccggagggcgaACGAGG
TACAGGGGACGGCCAgcgggaatgggaggagtcgggagggagaggcgagc
ggagagggggaggacgggaaggaggagaggagaaaaaagagcaAGTTGAC
AGGGGAGATGACGACGCGCGCCGAGCTCTACGGGACCGAGGTgtcggggg
ggctggagcTAGACGCCAAGAAGCTCAAGGACGCGGTGCAACGGCAGAGG
GCGTttcaggaggagaaggtggagctggacgagaggcggagggggtacAA
CACgaagggtgagggggaggtgacgaaagaggagatggaggcctACCGCC
TTGTGAGGCGACACGGCGAGGACCCCATGGCCAGGGTGGGCTCGGACGAG
CTTTTGGAGCATTGA

Synonyms

Publications