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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100105g9.10574.mrna |
| Orig protein id | gnl|cribi|Naga_100105g9.10574 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:313414..315511 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6349 ID=rna6349|Name=rna6349|organism=Nannochloropsis gaditana|type=mRNA|length=2288bp
TGTGTTTTTATTCTTAGTGTACATGATAACACATGCAAGCTCACACATAC
ACGACCATATCGATCAATCTTAGACAGGAGAATATGAAAAAAATTACGTC
CTTTGCTTCTCCTCGACGACTTGGAGGGAAGGCAGACGAGGCAGCGAGGG
AAGAGGCTCTGTCTTCCACCCCTAACAGCGAGAGCGCCCTGGATCTGACG
GCTGATATCAAGGAGATCCTGATAGCCGGGGCTAGAACGAGTCAAGCCAC
GAAGAACAGCCCACGCAACGGACTTGACGGACAAAATAATAACATCAGCA
GTAGCCCCCGCAAGATCCCTGCGGCATTTACCAGCCTTGCCCCTCCCCTT
TCTCCAGAATCTCCCCGAGAGAAGCGGGGCCTACTCGACTTCTCCGCGCT
CAGTTCTCTGTCCCCCGGCCGCAAGAAAGTCGCTGGTCTTGGATGTATCC
GCAACACAACAAGTCCTTTGCGCGCGGGAAGTGCGCCTGCTGGAGCTGGT
TTTGTATCCCAGCCCACTTCCCCTATCTCCTCCTCTCCAAGCTCTCCCTC
CTACAAATTCCCTCTCAGCTCCCGGAGCCCTGCCCGCGGCAGCAGCGGCA
GTCTTAGGCTCCACAGTTTGCGGAACCTGACAGGCACGCCCCCCAATACT
GCGCGCTCGCCAAAACCCGCCGATGGACTTTGGGGCCTCTTGGGCTACAC
GTCACCCTTGGACAGCGCCGTGCACGAAGCCGCCCGGCAGGGAGACCTGC
CCCTTCTCCAAACGCTTCTCACCCAGAACCCTACCTTGGTTTCCACGCCC
GGCAATGATAACGCGACGCCGTTGATGCTGGCGGCGGGGGCTGGGCAAGA
AGAAACAGTGCGATACTTACTGCGCGCGCTTTCTGGGCGGGCAGACGTGT
GGGCCACAGACGGTGCGAGGCGCACGGCCCTGCACCATCTCGCCAGGGGA
ACCTCGGATGCGCCCAGTGTGGCGCTTTGCTTGTTGGGGCTCGATCAGGA
AGGGGGGAGGCCGCAGCATTTGGATTGGGAGGACGTGGAGGGCCGGACTG
CAGTGCATTATGCCGCAAGCCGGGGGAACCTGCAAGTGCTTCGATTTTTG
TTGGGAAAAGGCGCCAATCCTTTGGCGGTGGATAAGGAAGGCTTAGATCC
TCTCCAGCTCCTGCTCCAAGAAAAGTCCAGGAGCGTCTCAGTGCAGAGCA
AGGGGGGTGAGATTGAGCGATGCCTGCAGGAGGCGCAGCAGCATGCAAGG
GCCCTGACCGAGGGAGGAGCGCTGCACAGCCATGATAGCCAGGAAGTCTC
CAAGAAGAAGGGTTCAGGCATCACGTGCGTGTGGGAGTGCATGGCGCGGC
TCTGTGGGGAGGCGGTGGAGGACGCCGGCGATGGCGAAGAGGACGATATT
CCCCAACCCGTTGAACATCAACTCCTCTGCGTTTTCCGCGCATCCAGCAT
TCCTCCCGATGCAAGCGAGGTCTACTTGGATAACCTCCGTCGCCATGGCT
ACGATAATCTCATGGCGCTGCGCGCTATCGCTTCCGAACGCTTCAAACTT
AGCCTTGGCAAATACGTGCCTGATCGCCAGGATAGAAAGCGGCTTATTAA
GGCCTTGAATGCGATGATAGACACAGTGGACGAAAGTGGTAAGATCCCTG
AGCCACCACTTCATCTTCCTGTGGGCGAATACCTCAAACACCTGTTGAGC
GTCTCAGACGATCTCGCGATGCGTTACGCGGAGGGCTTGCGGGGGATGAA
CGTCCACACGGGAGCTCAGTTAGGCACGGCGTCCTATGACGAGGTGGAAA
TGAATCTAGGATCTACCTTATTGCAGGGGCATAAGAAAGCATTGAAAATT
TGGCTACGTCTTCGCGCAGCCGATAGGGAGGGAAGCGGACGGGGAGAAAT
GAAGTCGCCCTGAATTATGCGTTAAAATTTTGTGGAAGGATTCAATGCGC
AATGGCAAGTACAGCAATGTAAATGTAAAGCAACGGTGATTTCGATGGAT
TTTTTGTGGAAAAGATAAGATTTACTTCTAATTAAGGTATGCTTTTGGGG
TCAAACAGTATGCCAAGGGGGTCAGGAGGTTACAAACTAAAAAGAAGGAG
CGTACCGCAAGACCATCGTTCCGACATTAAAGTGCAGCGTCATGAACAGA
GCAAAAGAAAAATCATAGGTCATACAACGCTCGACATGAGCAGTATTTTC
AACATCCCACCGCGGTATGGTTGTCGTGGGGGCTGTCTACCAGGTAATAC
CAGCCTTCACTCTCGCTAACCGCCTTCGCTCCTTTACC back to topprotein sequence of rna6349 >rna6349-protein ID=rna6349-protein|Name=rna6349|organism=Nannochloropsis gaditana|type=polypeptide|length=496bp
MRARPLEAPFLPGRPAQDGRNDEGRGREGGRGGRGGGEGGGRGGGGSSHA
DRVGEAIGELRAGRAAESAGGDRDLAKRGVRGREGRREGGRVGGRGDVFA
TRVLRLPGGKGSRAGACPHYLSEPAAEGGGVEERGGAAGCAFLPPASLPP
SGLTSTGNGVAVGREEGVVPRTALRRTRGSRGRGRRKETKVLEGVSSTDD
VQTLKLRVWEVLSAGEDAVSISLIWEGRELSEGRMTLGEAGVRKNGVVYA
RVEAAEEGLSVWETADLEGGGGGRGGGWEDPAAFGVVVENGEGARGEESK
GRKSYRPEQGFHGTFLASLSPSHPPVRNQLPSAASSSPPPPSPLPPFSPA
PTPGVTLGHEGGLDDRNEGLRGGGGLEGNGNGAKANKGRALRPVKGGVED
EEVSAGVVEEQAVSIGKRVAVAMEMDRKEGGTEEINGPSHGMLPDGVEEE
EEVQVEEGGGAGPGSDDEEDSMGTPVLRLNGDASARAGKGLTVEGF back to topmRNA from alignment at CM002468.1:313414..315511+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6349 ID=rna6349|Name=rna6349|organism=Nannochloropsis gaditana|type=mRNA|length=2098bp|location=Sequence derived from alignment at CM002468.1:313414..315511+ (Nannochloropsis gaditana)
CAGCCGCCTCCGCTGCCCCCacggcaacctcctcccccacgcccgcaaGT
CggctcgtctccttccccgcgccgCCTGGTCCCTGTTCACCACGCTCTTC
CCAGGCGCGATTTCCTTTTCGGAAGGCacgcccccctgccctcggtGCCA
GGAGAGCAAGCAGAGCCTTGCGGAGGTGAACATGATGAAGAAAGTGGCGC
GAGACGCAGAGGTCAAGTGCAAGGAACTGCGGGAGCTCGCCCGGCGGAAG
ACGACGTACCCGCCCGCATTGCGGAGGCTGGTGGAAGGGGCTTGCccgct
gggagggagggggaaggagggggaggggaaattcATGATACTGGGTCGTG
GTTGGCTGCGAGCCTGGCGGGAGTACGTGCGGGATTACAAGGAGAAGCCG
AAACCGCCCGTGCCCGATAAAGAGCGAGGGGTGCGATGCGTGCACGGCCT
CTTGaagctccctttcttcctggcCGACCTGCTCAAGACGGGAGAAATGA
cgaaggacgagggcgggagggagggaggggagggaggggaggaggagagg
gagggggaagagggggaggcggatcTAGTCACGCCGACAGAGTGGGAGAG
GCTATTGGAGAGCTACGCGCCGGAAGAGCGGCAGAAAGCGCAGGAGGCGA
CCGTGATCTTGCGAAGAGAGGTGTGCGAGgtcgagagggaaggagggagg
gagggagggtgggtggTAGGGGCGACGTTTTCGCCACTCGTGTGCTCCGT
TTGCCaggcggaaagggaagccgCGCGGGAGCGTGCCCGCATTACCTATC
GGAACCAGCCgctgaaggtggtggtgttgaAGAACGGGGAGGAGCCGCCG
GatgcgccttcctccctcccgcctccctcccgccctccggtTTGACCTCG
ACGGGCAACGGGGTGGCcgtggggagagaggagggggtggttcCTCGCAC
GGCGCTCCGCCGCACGCGCGGAAgccggggcaggggccgaagaaaggaga
caaaggtgctggagggggtGAGCAGCACGGACGACGTGCAGACTTTGAAG
CTGCGGGTGTGGGAAGTGCtgtcggcgggggaggacgcggtgagCATCTC
CTTGatctgggaggggagggagctcTCCGAGGGCAGGATGACactggggg
aggcgggcgtgaGGAAGAACGGGGTCGTGTACGCccgcgtggaggcggcg
gaggagggtttgaGCGTGTGGGAGACGGCTGacttggaggggggaggggg
agggagagggggaggctgggaggaTCCGGCGGCCTTCGGGGTTGTGGTAG
AGAAcggagagggggcgaggggggaggagtcgaAGGGTAGGAAGTCCTAT
AGGCCAGAGCAAGGCTTTCACGGGACGTTCTTAGCatccttgtctccttc
ccaccctcccgtccgTAACCAGCTGCCTTCtgctgcctcgtcctcccccc
ctcctccctcccccctccctcctttctctccggCGCCGACGCCGGGAGTG
ACGCTGGGCCACGAAGGTGGCCTCGATGACCGAAATGAGGGgctgagggg
agggggagggctggaaGGCAACGGCaatggcgcgaaagcgaACAAAGGAA
GGGCACTGCGTCccgtgaagggaggggtggaggatgaggaggttTCGGCG
GGTGTAGTCGAGGAACAGGCGGTGTCGATTGGAAAgagggtggcggtggc
gatggagatggacaggaaggaaggaggaacggAAGAAATCAATGGGCCGT
CACACGGCATGCTTCCTgatggcgtggaggaggaggaggaggtgcaggtg
gaggagggcggaggggcagggcctGGGTcagatgacgaggaagactcGAT
GGGCACGCCGGTTTTACGCCTGAATGGCGATGCTTCAGCCCGTGCTGGAA
AAGGCCTGACGGTCGAAGGCTTTTGATAgatttggagggaggcagagagc
tCGCAAAGGAGTCGGCGTTCAAAGAGGAACAGGGAGCAAGCAGtgtggga
gagaaggtggCAGGGACAGGCTGCGTGCAATGCATATAGTGATGGCTTGG
TTTGCGGGTCCGTTCCCAGAGATTTTTGAATGGCGGCGGGATgagagg back to topCoding sequence (CDS) from alignment at CM002468.1:313414..315511+ >rna6349 ID=rna6349|Name=rna6349|organism=Nannochloropsis gaditana|type=CDS|length=1491bp|location=Sequence derived from alignment at CM002468.1:313414..315511+ (Nannochloropsis gaditana)
ATGCGTGCACGGCCTCTTGaagctccctttcttcctggcCGACCTGCTCA
AGACGGGAGAAATGAcgaaggacgagggcgggagggagggaggggaggga
ggggaggaggagagggagggggaagagggggaggcggatcTAGTCACGCC
GACAGAGTGGGAGAGGCTATTGGAGAGCTACGCGCCGGAAGAGCGGCAGA
AAGCGCAGGAGGCGACCGTGATCTTGCGAAGAGAGGTGTGCGAGgtcgag
agggaaggagggagggagggagggtgggtggTAGGGGCGACGTTTTCGCC
ACTCGTGTGCTCCGTTTGCCaggcggaaagggaagccgCGCGGGAGCGTG
CCCGCATTACCTATCGGAACCAGCCgctgaaggtggtggtgttgaAGAAC
GGGGAGGAGCCGCCGGatgcgccttcctccctcccgcctccctcccgccc
tccggtTTGACCTCGACGGGCAACGGGGTGGCcgtggggagagaggaggg
ggtggttcCTCGCACGGCGCTCCGCCGCACGCGCGGAAgccggggcaggg
gccgaagaaaggagacaaaggtgctggagggggtGAGCAGCACGGACGAC
GTGCAGACTTTGAAGCTGCGGGTGTGGGAAGTGCtgtcggcgggggagga
cgcggtgagCATCTCCTTGatctgggaggggagggagctcTCCGAGGGCA
GGATGACactgggggaggcgggcgtgaGGAAGAACGGGGTCGTGTACGCc
cgcgtggaggcggcggaggagggtttgaGCGTGTGGGAGACGGCTGactt
ggaggggggagggggagggagagggggaggctgggaggaTCCGGCGGCCT
TCGGGGTTGTGGTAGAGAAcggagagggggcgaggggggaggagtcgaAG
GGTAGGAAGTCCTATAGGCCAGAGCAAGGCTTTCACGGGACGTTCTTAGC
atccttgtctccttcccaccctcccgtccgTAACCAGCTGCCTTCtgctg
cctcgtcctccccccctcctccctcccccctccctcctttctctccggCG
CCGACGCCGGGAGTGACGCTGGGCCACGAAGGTGGCCTCGATGACCGAAA
TGAGGGgctgaggggagggggagggctggaaGGCAACGGCaatggcgcga
aagcgaACAAAGGAAGGGCACTGCGTCccgtgaagggaggggtggaggat
gaggaggttTCGGCGGGTGTAGTCGAGGAACAGGCGGTGTCGATTGGAAA
gagggtggcggtggcgatggagatggacaggaaggaaggaggaacggAAG
AAATCAATGGGCCGTCACACGGCATGCTTCCTgatggcgtggaggaggag
gaggaggtgcaggtggaggagggcggaggggcagggcctGGGTcagatga
cgaggaagactcGATGGGCACGCCGGTTTTACGCCTGAATGGCGATGCTT
CAGCCCGTGCTGGAAAAGGCCTGACGGTCGAAGGCTTTTGA back to top
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