rna6307, rna6307 (mRNA) Nannochloropsis gaditana

Overview
Namerna6307
Unique Namerna6307
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1489
Alignment locationCM002468.1:214233..215843 -

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Properties
Property NameValue
Productguanine deaminase
Orig transcript idgnl|cribi|Naga_100313g6.7271.mrna
Orig protein idgnl|cribi|Naga_100313g6.7271
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:214233..215843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100313g6gene6098Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24381.1cds6292Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6307rna6307-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6307 ID=rna6307|Name=rna6307|organism=Nannochloropsis gaditana|type=mRNA|length=1489bp
CAGGTCCATCTAAGCTAGACATCTCCAAGTCCAGGCAGTCGTATTTCTAT
GACCGCTCAACAGAGCTTTGGTTTTCCTGTTTTGTGATACAAGAGAAGTT
ATGCCAGGAACTGTACAGGAGGGAAATGAGCACACCTTCAGTAAGGAGTA
TGCGATATGGCGATTCCATGTCTGAGCAAAGGCTGTGACACCACTCCGTT
CGTGAAGACTGCTTACATGGTAAGCATGTAATATTTTGAGAGAGGAAGCT
ACGCATCTCTGCTTTTCCCGTCATTAACATGTCGCAGTTGACCACAACAA
CAGGGTCCCAAGGTTGTAAAGACCACGTACGTGTTGAGGAAAAACCTCCC
CACCCCTTGGCACAGGGCTGAGCAAGCACACCGACACCCCCTCCCCAAAA
AGGACTCGGCAACGAGCGAATTAAAAACGATGCAGGGCAATATAGCACAA
GCACTCCCGCCCTGGCAAGTGACGCGCGCTGTCCTTGGCTGGTTGGAAGA
AGACGTACCTAGCATGGATATCGGTGGCCTTGTTGTGGGTGAAACGCCTA
CGACCGCGCTCCTCTACGGAAAATCCAAAGGGATCCTTTGTGGAAAAGTT
TTTTTTGACGCGGTCTTTAAAGCGTTGGATTGCACGGTGGAGTGGATGGA
AGGAATGGAAGATGGAGCGGTGTTGTCTCCTCCTGTACCCAGTAAAGCAA
CCACATATCCCAACCAGGGAAAGCAAGACGAGACTGACAGAGAGCAGTCT
ATAAAGGTCCACGTGGCAACAGTCAAAGGCAAAGCACGCCATATTTTGCT
TGGAGAACGCACGGCCTTGAATATTTTGACTAGGGCAAGTGGGATCGCCA
CCATCTCCCGGGCCTCGGTGGACATTGGGCGTCGCGCAGGGTGGCATGGG
ACCATTGCGGGCACCCGCAAGACCACTCCCGGCTTTCGAATGGTGGAAAA
ATACGCCCTCTTGGTCGGAGGGGCGGCCACACACCGGCAGGATTTGTCGC
AGATGGTCATGCTCAAGGACAATCACGTGTGGAGCACGGGGAGCATCACC
AAGGCCGTGAAAGCGGCGCGAGGGGTGGGTTCCTTTTCCATCAAAATAGA
GGTCGAGTGCCAGACCTTGTCGCAAGCGCAGGAAGCGGGGGCCGCAGGGG
CGGACGTGATCATGCTTGACAATTTTGCCCCTCCTCAACTGAAAGAAACG
GCTGCACTCGTGAAAAGCCAGTACCCGCACGTAGTGATAGAAGCCTCGGG
AGGGATCACCACGGAGACCCTGGAGGAATATTTTTCCCCTCATGTGGATG
TGATCAGTCGCGGGAGCCTGACCCAGGGCTATCCGGCTTTGGATTTCTCC
TTGAAAATTGTGCCGCTGGGTACGCGATGAGGGAGGGAGGAGGGGAGGAG
CGAGGGGTACAGGAAGAGATCCGGCTTAAATGCGACGCAAGCTGCGAATT
CCGGAGACGAAAGAAATGTGCGATGCCACTTCCTAAGCA
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protein sequence of rna6307

>rna6307-protein ID=rna6307-protein|Name=rna6307|organism=Nannochloropsis gaditana|type=polypeptide|length=536bp
MVQPIRDTIKKRGSVKVLERAALGVDGVGRICYFKADEEEKDEEEGNEED
ATPKRVEAQGEEARSAALASSHLVSCQPPPPSLRIVTLPPSHFLLPGLVD
THLHAPQFGYTGTATHLPLLEWLNRYTFPSEARLASDLSYAQSLYRSLLD
TVVGQGTTTALYFASKDLAPTKLLVDLIHAKGQRGFVGKVNMDRHAPEDY
CEASASASLAATEAFLDYVLDVVASPLVRPVLTPRFLPTCSDALLQGLGA
LARKYAGREGGREGGRGGATPGLHIQSHISESADQVAFNHRLAEHHQGES
RDLPVFERCGLLTPLTVLAHGIHLSPSELALLARRGAGLAHCPLSNFFFG
HGVLPVRKVLEAGVKVGLGTDVAGGYSSSMLSAIRSCVLASRALEDGVEE
WRHGEEEGDREGKKEGGKQGGEQWCKEGREGMRIDWKEALWLATMGGAEC
LGLEEEVGSWAVGKAFDAVRVDVKKGGAVVVLEGGGDSAEDLVEKWVNNG
DDRHVLEVYVVGREIKHGGWEGGGGGAGKGRPKTQK
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mRNA from alignment at CM002468.1:214233..215843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6307 ID=rna6307|Name=rna6307|organism=Nannochloropsis gaditana|type=mRNA|length=1611bp|location=Sequence derived from alignment at CM002468.1:214233..215843- (Nannochloropsis gaditana)
ATGGTGCAGCCAATCCGAGACACGATAAAAAAGCGGGGCAGTGTTAAGGT
TCTGGAGCGAGCGGCGCTGGGAGTGGATGGGGTGGGACGGATTTGCTATT
TCAAGGCGGATGAAGAAGAGAAGGACGAAGAGGAGGGAAACGAGGAGGAC
GCGACACCCAAACGGGTAGAAGCACAAGGGGAAGAGGCCAGATCCGCGGC
CCTTGCATCATCCCATCTAGTCTCCTGCCAGCCTCCCCCTCCTTCCCTTC
GCATTGTCACCCTCCCTCCCTCCCACTTCCTCCTCCCCGGCCTTGTCGAC
ACCCACCTCCACGCCCCTCAATTTGGCTACACGGGCACCGCCACCCATTT
GCCGTTGCTGGAATGGCTGAACCGGTACACTTTTCCCTCCGAGGCTCGGC
TCGCCAGCGATTTGTCCTACGCCCAGTCCCTCTACCGCTCCCTCCTTGAC
ACGGTGGTAGGGCAGGGTACCACCACGGCCCTCTACTTCGCCAGCAAGGA
CCTGGCTCCCACCAAGCTACTGGTCGACCTGATCCACGCCAAGGGGCAGC
GCGGTTTCGTAGGGAAGGTGAACATGGACAGGCATGCGCCCGAGGACTAC
TGTGAGGCGTCCGCCTCCGCCTCCTTGGCAGCGACGGAGGCGTTCCTCGA
CTACGTGCTGGACGTGGTGGCTTCCCCGTTGGTCCGCCCGGTCTTGACCC
CACGCTTCCTCCCCACCTGCTCCGACGCCTTACTCCAAGGGCTGGGTGCC
CTGGCGCGCAAATATGCAGGAAGGGAAGGAGGGCGAGAAGGAGGGCGGGG
TGGGGCGACACCCGGTTTACACATCCAGTCCCACATCAGCGAGAGCGCGG
ACCAGGTGGCTTTCAACCATCGTCTGGCCGAGCACCACCAAGGAGAGTCT
CGGGACCTTCCTGTCTTCGAACGGTGCGGGCTCCTCACCCCGCTGACCGT
CTTGGCCCATGGTATCCACCTCTCCCCCTCCGAGCTCGCCCTCCTGGCGC
GTAGGGGGGCCGGCCTCGCCCATTGCCCCCTCTCGAATTTCTTCTTCGGA
CACGGAGTACTCCCCGTGCGGAAGGTTCTAGAAGCCGGGGTCAAGGTCGG
TTTGGGCACTGACGTGGCAGGAGGGTACTCGAGCTCCATGCTGTCGGCGA
TCCGGTCCTGCGTGTTGGCCTCGCGGGCCCTGGAGGACGGGGTGGAGGAA
TGGCGGCATGGGGAGGAGGAAGGGGATAGGGAGGGAAAGAAGGAGGGAGG
GAAGCAGGGAGGAGAGCAATGGTGCAAAGAAGGGAGGGAGGGAATGAGGA
TCGATTGGAAGGAAGCCCTGTGGCTTGCGACGATGGGGGGGGCGGAATGT
CTGGGCTTGGAGGAGGAGGTGGGTTCATGGGCGGTGGGGAAAGCCTTCGA
CGCAGTCCGGGTAGATGTGAAGAAGGGAGGGGCAGTGGTGGTGCTGGAGG
GTGGGGGAGACAGTGCAGAGGACCTGGTGGAAAAGTGGGTGAATAACGGG
GACGACAGGCATGTCCTTGAGGTGTATGTGGTAGGGAGGGAGATCAAGCA
CGGGGGGTGGGAGGGAGGGGGCGGCGGGGCGGGGAAGGGGCGACCAAAGA
CACAGAAATAA
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Coding sequence (CDS) from alignment at CM002468.1:214233..215843-

>rna6307 ID=rna6307|Name=rna6307|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002468.1:214233..215843- (Nannochloropsis gaditana)
ATGGTGCAGCCAATCCGAGACACGATAAAAAAGCGGGGCAGTGTTAAGGT
TCTGGAGCGAGCGGCGCTGGGAGTGGATGGGGTGGGACGGATTTGCTATT
TCAAGGCGGATGAAGAAGAGAAGGACGAAGAGGAGGGAAACGAGGAGGAC
GCGACACCCAAACGGGTAGAAGCACAAGGGGAAGAGGCCAGATCCGCGGC
CCTTGCATCATCCCATCTAGTCTCCTGCCAGCCTCCCCCTCCTTCCCTTC
GCATTGTCACCCTCCCTCCCTCCCACTTCCTCCTCCCCGGCCTTGTCGAC
ACCCACCTCCACGCCCCTCAATTTGGCTACACGGGCACCGCCACCCATTT
GCCGTTGCTGGAATGGCTGAACCGGTACACTTTTCCCTCCGAGGCTCGGC
TCGCCAGCGATTTGTCCTACGCCCAGTCCCTCTACCGCTCCCTCCTTGAC
ACGGTGGTAGGGCAGGGTACCACCACGGCCCTCTACTTCGCCAGCAAGGA
CCTGGCTCCCACCAAGCTACTGGTCGACCTGATCCACGCCAAGGGGCAGC
GCGGTTTCGTAGGGAAGGTGAACATGGACAGGCATGCGCCCGAGGACTAC
TGTGAGGCGTCCGCCTCCGCCTCCTTGGCAGCGACGGAGGCGTTCCTCGA
CTACGTGCTGGACGTGGTGGCTTCCCCGTTGGTCCGCCCGGTCTTGACCC
CACGCTTCCTCCCCACCTGCTCCGACGCCTTACTCCAAGGGCTGGGTGCC
CTGGCGCGCAAATATGCAGGAAGGGAAGGAGGGCGAGAAGGAGGGCGGGG
TGGGGCGACACCCGGTTTACACATCCAGTCCCACATCAGCGAGAGCGCGG
ACCAGGTGGCTTTCAACCATCGTCTGGCCGAGCACCACCAAGGAGAGTCT
CGGGACCTTCCTGTCTTCGAACGGTGCGGGCTCCTCACCCCGCTGACCGT
CTTGGCCCATGGTATCCACCTCTCCCCCTCCGAGCTCGCCCTCCTGGCGC
GTAGGGGGGCCGGCCTCGCCCATTGCCCCCTCTCGAATTTCTTCTTCGGA
CACGGAGTACTCCCCGTGCGGAAGGTTCTAGAAGCCGGGGTCAAGGTCGG
TTTGGGCACTGACGTGGCAGGAGGGTACTCGAGCTCCATGCTGTCGGCGA
TCCGGTCCTGCGTGTTGGCCTCGCGGGCCCTGGAGGACGGGGTGGAGGAA
TGGCGGCATGGGGAGGAGGAAGGGGATAGGGAGGGAAAGAAGGAGGGAGG
GAAGCAGGGAGGAGAGCAATGGTGCAAAGAAGGGAGGGAGGGAATGAGGA
TCGATTGGAAGGAAGCCCTGTGGCTTGCGACGATGGGGGGGGCGGAATGT
CTGGGCTTGGAGGAGGAGGTGGGTTCATGGGCGGTGGGGAAAGCCTTCGA
CGCAGTCCGGGTAGATGTGAAGAAGGGAGGGGCAGTGGTGGTGCTGGAGG
GTGGGGGAGACAGTGCAGAGGACCTGGTGGAAAAGTGGGTGAATAACGGG
GACGACAGGCATGTCCTTGAGGTGTATGTGGTAGGGAGGGAGATCAAGCA
CGGGGGGTGGGAGGGAGGGGGCGGCGGGGCGGGGAAGGGGCGACCAAAGA
CACAGAAATAA
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Synonyms
Publications