rna6289, rna6289 (mRNA) Nannochloropsis gaditana

Overview
Namerna6289
Unique Namerna6289
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length987
Alignment locationCM002468.1:179395..179733 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100911g2.7364.mrna
Orig protein idgnl|cribi|Naga_100911g2.7364
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:179395..179733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100911g2gene6082Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6289rna6289-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24399.1cds6274Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6289 ID=rna6289|Name=rna6289|organism=Nannochloropsis gaditana|type=mRNA|length=987bp
CCACTTGTTATGAAGGAGAAAGAGCCTACTCGTGCAAGCGCATACAGAGG
ACGTGGCGACCTGACAAACCTTCATTCCCCACCTCCCCACCGTCCCAGAC
GAAAGGAGCATGCTGGCGTTTTCCCGTCGATCGATCGCCGGCCTCCGTCA
CTGTGTTGACCACGTGACATCCCGGAGACTCCTTCCTAACGTGAAAAGCA
CGATTTTGCGTCTGGCCTGTCCGAAATTCGTCAGCACCCACCCTCAGAGC
TTAAGGTCAGACCCACCGAGAAGGGGGGACAACATCGGCCCCCGGACTCG
CTATCAACACTGCCCTTCCCACGCCCTCTCTGGCTTTGACCCTCGTTCCT
CGCGTCGTCCCTTTTTTCCTCTCCTCTCCTCCTTTCCACTCCGTCTTCCT
GGGACCTCCGCCTTCTCGTCCTCCACGGGGGGGGAGGGTTACGGGCTGTT
GAAACTCGACCCTGACTTCACTGTGTTTGGGAACGACTGCATCCTGAAGT
TCCGCCTCACAAACTATCAATTTCCGGCTAGCACGGCGATCCCAGGGGGT
GGGGGCGAAGGGGGCGCAGGACCATCCAGAGTAAAGCCTATTAACTCACG
GCTCCTGGTGGAATTTACACGGCGCAAAAGTTCGGGCACGTACGATTGGA
AAGGAACCAAGCGTTTATCGTTGACTGCGGAGGAGATCGGCCTCCTGCTG
GACTGTGGGCCGTCGGAGGAGCTGATTTTTCGCCGTACCCGAGGCGGGGA
GGGCATAGGGGGTGGGACCATCGAGTCGGCGGGTCCGGTGCCACAACGGG
AAATGAAGGTGATCCCAACCACTACGGGCGGATGGGCCGTACGTTTCTCG
ATCGAAAACGAGGACTTATTCGACGTGACCGTGAGCCGGGGCCGGAAGGC
TGTCTTGAAAAGTTTGATCCACACTAGTCTGCCTGCTATCTTTGGGTGGG
GGGGAGGGAGTCGGGGAGAGGGGGGGAGAAGGGGGCC
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protein sequence of rna6289

>rna6289-protein ID=rna6289-protein|Name=rna6289|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
MKALNPILAGTQDRCDFFSKEEGFTVFGRYFSAQLCTISAHAFFIVQALH
RMHIAAPKSGCPSASMTRRPISSSYVGGRHVGAGDHHEILRMEMSSWIVE
MSVKEPVMKGLR
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mRNA from alignment at CM002468.1:179395..179733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6289 ID=rna6289|Name=rna6289|organism=Nannochloropsis gaditana|type=mRNA|length=339bp|location=Sequence derived from alignment at CM002468.1:179395..179733+ (Nannochloropsis gaditana)
ATGAAAGCTCTCAACCCAATCCTGGCAGGAACCCAAGACCGCTGTGACTT
CTTctcgaaagaggagggattcACAGTGTTCGGCCGGTATTTTTCGGCCC
AACTTTGCACAATATCAGCCCACGCGTTCTTTATTGTGCAAGCATTGCAT
CGCATGCACATAGCTGCGCCTAAATCCGGATGCCCGTCAGCTTCTATGAC
CAGGCGGCCCATATCGTCCTCCTATGTTGGAGGGCGGCATGTTGGAGCAG
GCGACCATCACGAAATCCTAAGAATGGAAATGAGTTCATGGATTGTTGAA
ATGTCAGTCAAGGAACCTGTAATGAAGGGTCTTCGATGA
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Coding sequence (CDS) from alignment at CM002468.1:179395..179733+

>rna6289 ID=rna6289|Name=rna6289|organism=Nannochloropsis gaditana|type=CDS|length=339bp|location=Sequence derived from alignment at CM002468.1:179395..179733+ (Nannochloropsis gaditana)
ATGAAAGCTCTCAACCCAATCCTGGCAGGAACCCAAGACCGCTGTGACTT
CTTctcgaaagaggagggattcACAGTGTTCGGCCGGTATTTTTCGGCCC
AACTTTGCACAATATCAGCCCACGCGTTCTTTATTGTGCAAGCATTGCAT
CGCATGCACATAGCTGCGCCTAAATCCGGATGCCCGTCAGCTTCTATGAC
CAGGCGGCCCATATCGTCCTCCTATGTTGGAGGGCGGCATGTTGGAGCAG
GCGACCATCACGAAATCCTAAGAATGGAAATGAGTTCATGGATTGTTGAA
ATGTCAGTCAAGGAACCTGTAATGAAGGGTCTTCGATGA
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Synonyms
Publications