EWM24402.1, cds6271 (CDS) Nannochloropsis gaditana

Overview
NameEWM24402.1
Unique Namecds6271
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:173022..173152 -
Alignment locationCM002468.1:172519..172610 -
Alignment locationCM002468.1:172350..172396 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24402.1
Productura6p
Orig transcript idgnl|cribi|Naga_102459g1.1471.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:173022..173152 -
CM002468.1supercontigCM002468.1:172519..172610 -
CM002468.1supercontigCM002468.1:172350..172396 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0019205nucleobase-containing compound kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000850Adenylat/UMP-CMP_kin
Homology
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|585105809|gb|EWM24402.1| (ura6p [Nannochloropsis gaditana])

HSP 1 Score: 185.267 bits (469), Expect = 1.523e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 
Query:    1 MDDCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADVLKFFDGWL 89
            MDDCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADVLKFFDGWL
Sbjct:    1 MDDCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADVLKFFDGWL 89
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|323308194|gb|EGA61443.1| (Ura6p [Saccharomyces cerevisiae FostersO])

HSP 1 Score: 100.138 bits (248), Expect = 1.729e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|157834086|pdb|1UKY|A (Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase >gi|157834087|pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase)

HSP 1 Score: 100.138 bits (248), Expect = 1.755e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  117 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 195
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|323332803|gb|EGA74208.1| (Ura6p [Saccharomyces cerevisiae AWRI796])

HSP 1 Score: 100.138 bits (248), Expect = 1.759e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|584375077|gb|EWG94968.1| (Ura6p [Saccharomyces cerevisiae R103])

HSP 1 Score: 100.138 bits (248), Expect = 1.817e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|398364671|ref|NP_012901.3| (bifunctional uridylate/adenylate kinase [Saccharomyces cerevisiae S288C] >gi|137024|sp|P15700.1|KCY_YEAST RecName: Full=Uridylate kinase; Short=UK; AltName: Full=ATP:UMP phosphotransferase; AltName: Full=Deoxycytidylate kinase; Short=CK; Short=dCMP kinase; AltName: Full=Suppressor of cdc8 protein; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK >gi|173138|gb|AAA35194.1| uridine monophosphokinase [Saccharomyces cerevisiae] >gi|173150|gb|AAA35200.1| uridine monophosphate kinase [Saccharomyces cerevisiae] >gi|386578|gb|AAB27365.1| UMP kinase [Saccharomyces cerevisiae, Peptide, 204 aa] >gi|486019|emb|CAA81859.1| URA6 [Saccharomyces cerevisiae] >gi|45270038|gb|AAS56400.1| YKL024C [Saccharomyces cerevisiae] >gi|285813233|tpg|DAA09130.1| TPA: bifunctional uridylate/adenylate kinase [Saccharomyces cerevisiae S288C] >gi|392298113|gb|EIW09211.1| Ura6p [Saccharomyces cerevisiae CEN.PK113-7D])

HSP 1 Score: 100.138 bits (248), Expect = 1.918e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|767175351|gb|AJS49582.1| (Ura6p [Saccharomyces cerevisiae YJM1400] >gi|767175654|gb|AJS49884.1| Ura6p [Saccharomyces cerevisiae YJM1401] >gi|767180759|gb|AJS54968.1| Ura6p [Saccharomyces cerevisiae YJM1479])

HSP 1 Score: 100.138 bits (248), Expect = 1.938e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|256271551|gb|EEU06594.1| (Ura6p [Saccharomyces cerevisiae JAY291] >gi|767171730|gb|AJS46046.1| Ura6p [Saccharomyces cerevisiae YJM1341] >gi|767172408|gb|AJS46649.1| Ura6p [Saccharomyces cerevisiae YJM1355] >gi|1023942647|gb|KZV09917.1| URA6 [Saccharomyces cerevisiae] >gi|1139713713|gb|ONH80792.1| Uridylate kinase [Saccharomyces cerevisiae])

HSP 1 Score: 100.138 bits (248), Expect = 1.938e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|151941519|gb|EDN59882.1| (uridylate kinase [Saccharomyces cerevisiae YJM789] >gi|323304111|gb|EGA57889.1| Ura6p [Saccharomyces cerevisiae FostersB] >gi|349579536|dbj|GAA24698.1| K7_Ura6p [Saccharomyces cerevisiae Kyokai no. 7] >gi|767012337|gb|AJS32303.1| Ura6p [Saccharomyces cerevisiae YJM320] >gi|767012662|gb|AJS32603.1| Ura6p [Saccharomyces cerevisiae YJM326] >gi|767019586|gb|AJS32905.1| Ura6p [Saccharomyces cerevisiae YJM428] >gi|767023302|gb|AJS33205.1| Ura6p [Saccharomyces cerevisiae YJM450] >gi|767023543|gb|AJS33445.1| Ura6p [Saccharomyces cerevisiae YJM451] >gi|767032981|gb|AJS34352.1| Ura6p [Saccharomyces cerevisiae YJM470] >gi|767033284|gb|AJS34654.1| Ura6p [Saccharomyces cerevisiae YJM541] >gi|767033926|gb|AJS34954.1| Ura6p [Saccharomyces cerevisiae YJM554] >gi|767039896|gb|AJS35254.1| Ura6p [Saccharomyces cerevisiae YJM555] >gi|767040196|gb|AJS35553.1| Ura6p [Saccharomyces cerevisiae YJM627] >gi|767040557|gb|AJS35852.1| Ura6p [Saccharomyces cerevisiae YJM681] >gi|767040865|gb|AJS36153.1| Ura6p [Saccharomyces cerevisiae YJM682] >gi|767041167|gb|AJS36454.1| Ura6p [Saccharomyces cerevisiae YJM683] >gi|767046562|gb|AJS36749.1| Ura6p [Saccharomyces cerevisiae YJM689] >gi|767156571|gb|AJS40047.1| Ura6p [Saccharomyces cerevisiae YJM1083] >gi|767157180|gb|AJS40654.1| Ura6p [Saccharomyces cerevisiae YJM1133] >gi|767157481|gb|AJS40954.1| Ura6p [Saccharomyces cerevisiae YJM1190] >gi|767164821|gb|AJS41861.1| Ura6p [Saccharomyces cerevisiae YJM1208] >gi|767166263|gb|AJS42764.1| Ura6p [Saccharomyces cerevisiae YJM1248] >gi|767167137|gb|AJS43635.1| Ura6p [Saccharomyces cerevisiae YJM1273] >gi|767167442|gb|AJS43939.1| Ura6p [Saccharomyces cerevisiae YJM1304] >gi|767168097|gb|AJS44241.1| Ura6p [Saccharomyces cerevisiae YJM1307] >gi|767168397|gb|AJS44540.1| Ura6p [Saccharomyces cerevisiae YJM1311] >gi|767168696|gb|AJS44838.1| Ura6p [Saccharomyces cerevisiae YJM1326] >gi|767172031|gb|AJS46346.1| Ura6p [Saccharomyces cerevisiae YJM1342] >gi|767173315|gb|AJS47553.1| Ura6p [Saccharomyces cerevisiae YJM1383] >gi|767173617|gb|AJS47854.1| Ura6p [Saccharomyces cerevisiae YJM1385] >gi|767174524|gb|AJS48758.1| Ura6p [Saccharomyces cerevisiae YJM1388] >gi|767174821|gb|AJS49054.1| Ura6p [Saccharomyces cerevisiae YJM1389] >gi|767175050|gb|AJS49282.1| Ura6p [Saccharomyces cerevisiae YJM1399] >gi|767175951|gb|AJS50180.1| Ura6p [Saccharomyces cerevisiae YJM1402] >gi|767176858|gb|AJS51084.1| Ura6p [Saccharomyces cerevisiae YJM1418] >gi|767177163|gb|AJS51388.1| Ura6p [Saccharomyces cerevisiae YJM1419] >gi|767177770|gb|AJS51993.1| Ura6p [Saccharomyces cerevisiae YJM1434] >gi|767178072|gb|AJS52294.1| Ura6p [Saccharomyces cerevisiae YJM1439] >gi|767178373|gb|AJS52592.1| Ura6p [Saccharomyces cerevisiae YJM1443] >gi|767178672|gb|AJS52890.1| Ura6p [Saccharomyces cerevisiae YJM1444] >gi|767178968|gb|AJS53185.1| Ura6p [Saccharomyces cerevisiae YJM1447] >gi|767179561|gb|AJS53776.1| Ura6p [Saccharomyces cerevisiae YJM1460] >gi|767179861|gb|AJS54075.1| Ura6p [Saccharomyces cerevisiae YJM1463] >gi|767180463|gb|AJS54673.1| Ura6p [Saccharomyces cerevisiae YJM1478] >gi|767181366|gb|AJS56137.1| Ura6p [Saccharomyces cerevisiae YJM1573] >gi|767181666|gb|AJS56436.1| Ura6p [Saccharomyces cerevisiae YJM1574] >gi|767182347|gb|AJS57035.1| Ura6p [Saccharomyces cerevisiae YJM1615] >gi|767183515|gb|AJS56734.1| Ura6p [Saccharomyces cerevisiae YJM1592] >gi|767185131|gb|AJS55835.1| Ura6p [Saccharomyces cerevisiae YJM1549])

HSP 1 Score: 100.138 bits (248), Expect = 2.024e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
[Close]
BLAST of EWM24402.1 vs. NCBI_GenBank
Match: gi|767009608|gb|AJS30809.1| (Ura6p [Saccharomyces cerevisiae YJM195] >gi|767173010|gb|AJS47249.1| Ura6p [Saccharomyces cerevisiae YJM1381] >gi|767173918|gb|AJS48154.1| Ura6p [Saccharomyces cerevisiae YJM1386])

HSP 1 Score: 100.138 bits (248), Expect = 2.113e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:    3 DCTLTKAVLYLNAPEAVMLERLLERGKTSGRSDDNAESIKKRFKTYVESTMPIIEHFKAQEKLWEVRADRPIGDVSADV 81
            D   +K +L+ + PE +MLERLLERGKTSGRSDDN ESIKKRF T+ E++MP+IE+F+ + K+  VR DR + DV  DV
Sbjct:  118 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDV 196
The following BLAST results are available for this feature:
BLAST of EWM24402.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105809|gb|EWM24402.1|1.523e-59100.00ura6p [Nannochloropsis gaditana][more]
gi|323308194|gb|EGA61443.1|1.729e-2458.23Ura6p [Saccharomyces cerevisiae FostersO][more]
gi|157834086|pdb|1UKY|A1.755e-2458.23Chain A, Substrate Specificity And Assembly Of Cat... [more]
gi|323332803|gb|EGA74208.1|1.759e-2458.23Ura6p [Saccharomyces cerevisiae AWRI796][more]
gi|584375077|gb|EWG94968.1|1.817e-2458.23Ura6p [Saccharomyces cerevisiae R103][more]
gi|398364671|ref|NP_012901.3|1.918e-2458.23bifunctional uridylate/adenylate kinase [Saccharom... [more]
gi|767175351|gb|AJS49582.1|1.938e-2458.23Ura6p [Saccharomyces cerevisiae YJM1400] >gi|76717... [more]
gi|256271551|gb|EEU06594.1|1.938e-2458.23Ura6p [Saccharomyces cerevisiae JAY291] >gi|767171... [more]
gi|151941519|gb|EDN59882.1|2.024e-2458.23uridylate kinase [Saccharomyces cerevisiae YJM789]... [more]
gi|767009608|gb|AJS30809.1|2.113e-2458.23Ura6p [Saccharomyces cerevisiae YJM195] >gi|767173... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6286rna6286Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications