rna6277, rna6277 (mRNA) Nannochloropsis gaditana

Overview
Namerna6277
Unique Namerna6277
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length549
Alignment locationCM002468.1:158478..158708 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101821g1.3582.mrna
Orig protein idgnl|cribi|Naga_101821g1.3582
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:158478..158708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101821g1gene6070Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24411.1cds6262Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6277rna6277-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6277 ID=rna6277|Name=rna6277|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
CCCCTCCAGGTCGCCTTCCAAGACGCCCTGACCGAGGCTACTTACCCCGC
GTCTCTCGCAGGTCTCTCCTACGACCTCGATTTCACCGCCAAAGGGCTTC
GGCTTACGGTGGGGGGGTATAACGACCGGCTCGCGGACTTCACCAGAAAA
ATTGCCTCCCGCCTTTATTCCTTCAGCCAGGAACTTTCTTCCTCCTCCTC
CTCCTCCTCCGCCTTCAGCCGCTACAAAGACATCGTCACCCGTGAGCTTG
CATCTTTTGACAACCTTCAGCCGTACCAACATGCAGGCTACCACGCCAAC
CTCCTCCTTGAGGATCCCAAATGGCCCATATCGCAGGTCCGGGCAGCCCT
TACCTCCCTCTCTCCTTCCGACCTCATCACCTTCGCTTCGCCTTCCTCCC
TCTTCAAGGAGGGTTACGGAACCGCCCTCCTCCAGGGAAATGTGCGAGAG
GAAGAAGCGGTCGCCCTCCTGGAGGAAGTGGCCGCCGTCCTCCCATTCCA
AAGCGTCCTCCCCGTCGGGGAAAGGCCCACGGTGAGGGAAGGAGGGAGG
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protein sequence of rna6277

>rna6277-protein ID=rna6277-protein|Name=rna6277|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MGHRAPSVALSLGKVGAIRASAQGCLGHPNQPPLVSFCPHVPGTCQSSTI
MLTGLVADYSSDEDGKASLGAFFSAF
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mRNA from alignment at CM002468.1:158478..158708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6277 ID=rna6277|Name=rna6277|organism=Nannochloropsis gaditana|type=mRNA|length=231bp|location=Sequence derived from alignment at CM002468.1:158478..158708- (Nannochloropsis gaditana)
ATGGGACACCGTGCGCCCTCCGTGGCCCTAAGCCTGGGGAAAGTCGGCGC
AATTCGAGCGTCAGCGCAAGGGTGTCTGGGGCATCCGAACCAACCTCCCC
TCGTTTCCTTTTGCCCTCACGTGCCCGGTACCTGTCAAAGCTCAACAATC
ATGCTTACGGGTTTGGTGGCTGACTATTCTTCGGATGAGGATGGGAAAGC
AAGTCTAGGTGCGTTTTTTTCCGCCTTCTGA
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Coding sequence (CDS) from alignment at CM002468.1:158478..158708-

>rna6277 ID=rna6277|Name=rna6277|organism=Nannochloropsis gaditana|type=CDS|length=231bp|location=Sequence derived from alignment at CM002468.1:158478..158708- (Nannochloropsis gaditana)
ATGGGACACCGTGCGCCCTCCGTGGCCCTAAGCCTGGGGAAAGTCGGCGC
AATTCGAGCGTCAGCGCAAGGGTGTCTGGGGCATCCGAACCAACCTCCCC
TCGTTTCCTTTTGCCCTCACGTGCCCGGTACCTGTCAAAGCTCAACAATC
ATGCTTACGGGTTTGGTGGCTGACTATTCTTCGGATGAGGATGGGAAAGC
AAGTCTAGGTGCGTTTTTTTCCGCCTTCTGA
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Synonyms
Publications