EWM24417.1, cds6257 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|585105843|gb|EWM24417.1| (hypothetical protein Naga_101269g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 257.684 bits (657), Expect = 6.664e-87 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 Query: 1 PPSLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127 PPSLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM Sbjct: 1 PPSLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|167517014|ref|XP_001742848.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163779472|gb|EDQ93086.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 100.523 bits (249), Expect = 3.441e-23 Identity = 48/116 (41.38%), Postives = 76/116 (65.52%), Query Frame = 0 Query: 12 GAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127 G +D VLLAN+LCRLPDP LE + + ++ PGG+ + T+PFSW + FT + +WLGG DGK+S +L ++ GF+L+KE +MP +I +H R ++L+ P V++++ Sbjct: 185 GQFDVVLLANLLCRLPDPVACLERM-------QHLVKPGGILVTTSPFSWLDQFTERTQWLGGY--DGKESRDKLVEVVTNAGFELVKEGDMPFLIREHRRKYQLVFPHLAVFRRV 291
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1160388879|ref|WP_079433228.1| (hypothetical protein [Zoogloea sp. LCSB751]) HSP 1 Score: 103.219 bits (256), Expect = 3.697e-23 Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGK--DSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126 +DAVLLAN+LCRLP P L GR GG+ G++ GGL L +P+SW E FTP+E WLGG DG+ S LK + GF L +E+E+PL+I +HAR ++ I +WQ+ Sbjct: 687 FDAVLLANLLCRLPSPMSLL----GRLGGQRGLVKVGGLVALFSPYSWLEQFTPREAWLGGYEKDGQAVRSADTLKAFLAAEGFVLRREEEVPLVIREHARKYQFIVTHGMLWQR 797
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|736412225|ref|WP_034434745.1| (hypothetical protein [Candidatus Contendobacter odensis]) HSP 1 Score: 102.834 bits (255), Expect = 5.837e-23 Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHA--ELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126 +DAVL+AN+LCRLP P+ L GR G G++ PGGL + +P+SW E FTP E WLGG DG+ H+ L L+ GF LL+E E+PL+I +HAR ++ I A +W++ Sbjct: 694 FDAVLMANLLCRLPSPKALL----GRLSGPLGLVKPGGLLAIFSPYSWLESFTPPEAWLGGYEKDGQPIHSATALGALLRAEGFDLLREAEVPLVIREHARKYQYIVTHAMLWRR 804
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|577001465|emb|CDH46193.1| (conserved hypothetical protein [Candidatus Contendobacter odensis Run_B_J11]) HSP 1 Score: 102.834 bits (255), Expect = 6.070e-23 Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHA--ELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126 +DAVL+AN+LCRLP P+ L GR G G++ PGGL + +P+SW E FTP E WLGG DG+ H+ L L+ GF LL+E E+PL+I +HAR ++ I A +W++ Sbjct: 696 FDAVLMANLLCRLPSPKALL----GRLSGPLGLVKPGGLLAIFSPYSWLESFTPPEAWLGGYEKDGQPIHSATALGALLRAEGFDLLREAEVPLVIREHARKYQYIVTHAMLWRR 806
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1180721378|ref|WP_084205034.1| (hypothetical protein [Azoarcus tolulyticus] >gi|1132000087|emb|SIQ61252.1| 5-histidylcysteine sulfoxide synthase/putative 4-mercaptohistidine N1-methyltranferase [Azoarcus tolulyticus]) HSP 1 Score: 101.679 bits (252), Expect = 1.464e-22 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKD---SHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127 YDAVLLAN+LCRLP P+ L GR GG G++ GG+ + +P++W E FTP+ WLGG DG+ S LK L+G GF+L +E EMPL+I +HAR ++ I A +WQ++ Sbjct: 681 YDAVLLANLLCRLPSPKSLL----GRLGGPRGLVRTGGVVAILSPYTWLEQFTPRGAWLGGYM-DGERAVRSADTLKTLLGADGFELRREAEMPLVIREHARKYQYIVTHAMLWQRV 792
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1179924589|ref|WP_083446944.1| (hypothetical protein [Azoarcus sp. CIB] >gi|909829016|gb|AKU11814.1| hypothetical protein AzCIB_1919 [Azoarcus sp. CIB]) HSP 1 Score: 101.293 bits (251), Expect = 1.830e-22 Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKD---SHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127 YDAVLLAN+LCRLP P+ L GR GG G++ GG+ + +P++W E FTP+ WLGG DG+ S LK L+G GF+L +E EMPL+I +HAR ++ I A +WQ++ Sbjct: 681 YDAVLLANLLCRLPSPKSLL----GRLGGPRGLVRTGGVVAILSPYTWLEQFTPRGAWLGGYM-DGERAVRSADTLKALLGADGFELRREAEMPLVIREHARKYQYIVTHAMLWQRV 792
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1197345297|gb|ART37598.1| (E387 [uncultured bacterium]) HSP 1 Score: 100.523 bits (249), Expect = 3.408e-22 Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGK--DSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126 +DAVL+AN+LCRLP P+ L GR GG G++ GGL L +P+SW E FTP WLGG A DG +S L+ L GF L +E EMPL+I +H+R ++ I A +WQ+ Sbjct: 689 FDAVLMANLLCRLPSPKSLL----GRLGGPRGLVRVGGLVALFSPYSWLEQFTPHGAWLGGYAKDGHEVNSADALRGLFTQQGFVLRREAEMPLVIREHSRKYQYIVAHAMLWQR 799
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|514680666|ref|XP_004987920.1| (hypothetical protein PTSG_10993 [Salpingoeca rosetta] >gi|326435480|gb|EGD81050.1| hypothetical protein PTSG_10993 [Salpingoeca rosetta]) HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-21 Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0 Query: 3 SLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126 SL+P L G +D VL+AN+LCRLP+P L+ + + GG ++T+PFSW + FT +++WLGG DGK S L M GFKL+KE +P +I +HAR ++L+ P V+Q+ Sbjct: 68 SLNPDL---GQFDVVLMANLLCRLPNPTACLDSL-------PTFVPRGGHVVITSPFSWLDEFTDRDQWLGGH--DGKASRDGLVERMSANGFKLVKEDSIPFLIREHARKYQLVFPHLGVFQR 179
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|517819890|ref|WP_018990098.1| (hypothetical protein [Azoarcus toluclasticus]) HSP 1 Score: 97.4413 bits (241), Expect = 4.199e-21 Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0 Query: 14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGK---DSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127 YDAVLLAN+LCRLP P+ L GR GG G++ GG+ + +P++W E FTP+ WLGG DG+ S LK L+ GF+L +E E+PL+I +HAR ++ I A +WQ++ Sbjct: 681 YDAVLLANLLCRLPSPKSLL----GRLGGPRGLVRTGGVVAILSPYTWLEQFTPRGAWLGGYM-DGERAVRSADALKALLDADGFELRREAEIPLVIREHARKYQYIVTHAMLWQRV 792 The following BLAST results are available for this feature:
BLAST of EWM24417.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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