rna6258, rna6258 (mRNA) Nannochloropsis gaditana

Overview
Namerna6258
Unique Namerna6258
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1299
Alignment locationCM002468.1:111852..113270 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100902g1.1546.mrna
Orig protein idgnl|cribi|Naga_100902g1.1546
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:111852..113270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100902g1gene6051Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6258rna6258-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24428.1cds6243Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6258 ID=rna6258|Name=rna6258|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
ATGAAAGAAGGACGGGATGGCTGTGGCCATCCGCCCCTGGAAGGCAATAG
GAGTCCCCCAGTACCCACCGGGCTTGGTAGAAGCGGGGACAGCCGCTATA
GTAAGAAGCGTTTGGCAGCATCACCGTCAAGATCAAGACTAAGAAGAAGA
TGGCGGCAGGACAGAATTATGTATTTTAAACGCAGCCCTTTCCATCCCGT
CGTACTGACTGCGCCTCTCCTCCTCCTTAGCCTACTGTCGTCGTTTTGTG
GTCGAGCCTACTCATTTGTCTTGCGTGAAAGTGTTCCATGCAATCGTCCT
TTATTCCGTCTGCCACACCGTGGGGAGAGAAGTACCCTTTCCCCCTTGAT
ACCTTCCTCCTCTCCTCCTACTCTACTCTATGCGGCTGCACCCCGTAAAC
GTAGCAAGATTAAGATAGGGGAGGCGGAGATGTCTTTTTTCTTCGACGAG
GAGGAAGAAGATGAGATAGGAGAAGAGGAGGGATGGTCCCAGGCTGCATG
GCAGGAGGGCACGGAAGAGGACGGAGCAGAGGGAGGGAGGGAGGGAGGGA
GAGAGGGGGAGGGAGGACGAGGGAGGCGTCTGGCACGAAGCACGGCTGCC
GAGATCATGCAAGCGAAGATCGACGACCCTTACTACCAGTACCGGGACCG
ACGCATGTTTAAAATGGGGGAGGACGAGCGGGCGTATTACGACAGCTTTG
TTCTCACGCTGTCTCTCTTCGCCTACTCCTCAGGATCAATGCGTACAAGC
CCCCGTTCCCCTCCTCCCCTTCCTCCTCCCCTTCCTCCCCCCCCCTCCTC
CACCTCCCCTTCCTCCTCCGTGCCCTCCAACCTCATCGTGGGCTCCGGAA
CAGAGCTGTACCCTGGCCGCTCAGCGGGCATGTCTCCCGCGGTCTTGGAG
GCGATCTCCTCCTTCCTTGTCGAAGGAGGGGAGGAGCCCTTGCTCTTGAC
GGAAAGAGAGGAGATGGGAGGAAGTGGAGGGGGGGGAAGGTTCGGGGTCG
GGCAGGGGGGAAAAGAGGAAGCGAAGGAGAAGGAACGGGTGCGGTGGTTG
TCGGACGAAGCCGCGGAGGGCAATGCTCGTGGGGCGGTGGAGGAGCGGGA
GGAAGGGGAACGCCTGTTTAGCAGCGAATGGTACGCTGGGGAAATGCGAC
GACGGAACGACCAGGGGAAGTACTCCTTGGCACTGACGTACTGGGAGCGG
TTGCTGCGGGAAGGGATTCGCCCGTGCCCGGCGGCCTATACGCAGGCGCT
CCGGGCGTGTCGTTTTACCGGCGAGATGGAGCTGGCATTGGAGCTGTAG
back to top

protein sequence of rna6258

>rna6258-protein ID=rna6258-protein|Name=rna6258|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
LPPSLPPSLPGGLDWVIRLLAHSRRYLQTLDLFEVLSSKGVVLRASSFNV
VMEELAAIPKWREVIKVIPSFLPPSLPSYLKKHAPPSLRPCLTRLFLSSP
HTSGEQPSPSLPPSLPPSPPSSLPPPPLPRSGP
back to top

mRNA from alignment at CM002468.1:111852..113270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6258 ID=rna6258|Name=rna6258|organism=Nannochloropsis gaditana|type=mRNA|length=1419bp|location=Sequence derived from alignment at CM002468.1:111852..113270+ (Nannochloropsis gaditana)
ctccctccctccctccctccctccctcccagggggCCTCGACTGGGTCAT
CCGTCTCCTGGCGCACTCCCGCCGGTACCTCCAGACCCTCGACCTCTTTG
AGGTGCTGAGCAGCAAGGGGGTTGTGCTGCGGGCATCTTCCTTCAAcgtg
gtgatggaggagctggcggccATCCCCAAGTGGCGGGAGGTGATCAAGGT
aatcccgtccttcctcccgccctccctcccttcttacCTTAAAAAGCAtg
cgcccccctcccttcgtccttgTCTCACGCgacttttcctttcttctcct
cacACAAGTGGAGAACaaccctcaccttcccttcctccctccctccctcc
ctcccccccttcctccctccctcccccccccctcccacggtcCGGGCCTT
GATGAAGGCATACCGTGTGTCTGCCGACTCGGACAGCTACTGTTGGTTTA
TCACAGCCTATCTGGCACTGGGGCGCACCTACGATGCCACGCGACTCTTG
GCTGAGATGGGGGATCGGGgggtacggagggagggagggagggagggagg
gagggagggaggggggagggagggaacaaggaagggaacaggggggaggt
ttcTGAGGATAGAATGAGGCGGTGTCCGGGTCGCCAccctttccatttcc
cctttcccgttgttgatttcctcccttctttatgtccaccctccttgctc
acCTCAGCTCGCGCCATCGGAGCGTATGTTTGCCATGTGGACATCCATGG
CGGCAGTGACCTCGGCAGAGAggcgagcagcagcggcggtaGGAGGAATC
GCCTCTCCCGgtgcggcggcagcgggtttggtggagggcatggaggagag
ggaggtgggggaaggggagatggggggggaggagggcccgtCCATGTCGT
TGGCGTGAGGTGGCGCACGGgcaggatgggaaggaggaagaggggggtgC
GAGCACAGGGATGACGGGACGCCTGGCGGTAGTCGGGACTCTAGACACGG
GGTGTATGTAACGATTCTAGCAATCAGTAGAGGTCTTGGGGAGGGTTCAC
AGCGATCTGGTATAGGGCAAGATGGTTGAAAGGCATTCGCAGGGAGGGGT
CTGCATATGAGGGATAGGTGAAGACGTCGAGGCAAACAGCGCGGGATTAA
AGCAGGCATAAACTGGAGAGAACGGgcgaaggggtggggagaggCTCGAC
CATAGGAACGGACGAGTCATGGAAATGGTGTGAAGGAGCGTAAATGAAAA
TGTGACAAAGTCGTTTGAGAACGGCTGCGCCTTGTGGCAGCGTTGAGCTG
TTGCAGGATGAAGATGACGATAACATTAACGAATGAAGGAATGGCACGAT
TTTGGAAGAGTCTGAAAGGTGGCACTCTCATCGTGTGTCCTCACTTCTTT
GCATCTTCGTCTTCATTCT
back to top

Coding sequence (CDS) from alignment at CM002468.1:111852..113270+

>rna6258 ID=rna6258|Name=rna6258|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002468.1:111852..113270+ (Nannochloropsis gaditana)
ctccctccctccctccctccctccctcccagggggCCTCGACTGGGTCAT
CCGTCTCCTGGCGCACTCCCGCCGGTACCTCCAGACCCTCGACCTCTTTG
AGGTGCTGAGCAGCAAGGGGGTTGTGCTGCGGGCATCTTCCTTCAAcgtg
gtgatggaggagctggcggccATCCCCAAGTGGCGGGAGGTGATCAAGGT
aatcccgtccttcctcccgccctccctcccttcttacCTTAAAAAGCAtg
cgcccccctcccttcgtccttgTCTCACGCgacttttcctttcttctcct
cacACAAGTGGAGAACaaccctcaccttcccttcctccctccctccctcc
ctcccccccttcctccctccctcccccccccctcccacggtcCGGGCCTT
GA
back to top
Synonyms
Publications