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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100481g1.5252.mrna |
| Orig protein id | gnl|cribi|Naga_100481g1.5252 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:94769..95992 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6253 ID=rna6253|Name=rna6253|organism=Nannochloropsis gaditana|type=mRNA|length=1743bp
TGCCACAAGCTGGCTTTGCGTGGCTCGCCAACACCTGCGGTCGCATCGTT
CTTCCTCCTGGTGGCCCGAAATCCTGGGTTTCTTTGACCATTTTTGATGC
CTGCACAGCCTACAACGTCAAAGTCATCCTATTTTCGGGATGTCCTCATC
TGTTAAACAGGCATCATGCCAAAATTGTGCTCGCGACCTGATTGTGTGAT
AGGCAATGATTGTGTGTTTAGCTGGCCCACAAAATTCGAATTTCTCAGTC
GTACACTCCGCGAACCTTTTCAAGTGTCTAGTCGGCCCCTTTCTGCCTCC
TATGGAAGTGGTGCCAAGCCGTCGGGGCACAGCGCAAATCGCAGTGGAAA
TCGAGGAAGAGGAGGAAGCAATTTGCGTGCAAAAAGCGCTTGGGGCCTCC
TTATCCTTGCTCCATGTCATGCGACAGAAGCAGAAGCCCAGCCGTAGGCC
GGAGGCGGAGGGATGGAGGGATCATTCGGTGCGATACGTTTCCCCTTCCT
CGATGCCAGAGTCTTCCTCACCGAGCCACCTCGACGCTACCGTGTTGTCC
CGCTCGGCTGGTTTTCAGGCCTTGCGGGTGTGCTTGGAAGAGATTCTGAC
CCTTCCCATGGCCCTGGAGCGGGAGCGAGAGGGCCTGGTCGCGACGGAAC
GGGCGTTTGTAGACGGCATGGGGCCGTTTGCAGCGCCCGAGGGAGTAAAC
AAAAGCGGCAACGACACCAAACCCGACGTCCCCCAACCCTTCTCCCTCGC
CCCCTCCCTCTTCGAGGCCGCGTCTACCGCCAGCCCCACCCCCTCGGAGA
GCAGCCACAGCGGCATGGATCTCTCCCCCCCCCCCGCCTCGACGTGCAAG
AGGCGCCGGCGTATGTGGTCGTACCATCCAGAGGCAGGGGCGGACGGGGC
ACAGGAGAAGGCGGGAAAGAGGGAGGGAGGGAGGGGGGGAAGGAGGGAGG
GTCTCTTGCGAAGGTCCCTCAGCGCGGGTTCTCTGCACGTCTTGGACACA
GAGGAGGTGGAGACCAGGAACGTGGAGGAGGAAGGAAGGGAGGAGGTGAA
AGAGGAGCTCTCGCGCCCCCCCCCACACTGCGCCCTCCCCGCCCTCCCCA
AGAGCCACGCCCAGACCCATACTGCTTCCTGCCTCACTCCTTCTCCTCCC
CCTCCTCCCTCCCTGCCCGCGATACCTTCACCTCCACGACCGACCTGCTC
CGCCTCGCCGTCCACTTCCTCCTCGTCGGGGACGCTCCTTCCCCCCGCCT
TCGTCCCCGCCCTCCCTCCCTCCCTCTTCCCCCCCCCCTCCCTCCGAGAC
CCTCTCCCGGCACGACCGGCGGTGCCTGACCACCCTCTCGCTTGTTTGCA
AGGACTGGAAGGACCTCGCCCGAGAACCTCGCTTTTGGCGCCCCATCCTC
AAAGCGGTACTTCCCGTGGCTGATGCGGAGGCGGAAGAACAGGCACCATG
GCGGCGGTGGGAGGAAGGGAAGGGAGGGAAAGGAGGACGGAGGGGAAGAG
GAGCAGAACACGACCCACCCCAGGCTCGCACCAGGGCGTCCTCCCTCCCT
CCCTCCCCCTCCCCCTCCCCTTTCGCCCTCCTCCGCGAGCAGGGCCGTGC
TATCCTCCAGCGCCAGCTCCTCCTGGAGGGCAGCCTGCCACCCCCGTCCT
CCTTGCTCCTCCAGTTCGACGTCTTGGACATGATGGACGGTCTCCGCCTT
CTCTCCTGCTCGGGGCCCTTTGTGGTTGTGCCCGTCGAAGGCA back to topprotein sequence of rna6253 >rna6253-protein ID=rna6253-protein|Name=rna6253|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
SLPPSLTSPLLPPTPPLLPPPGGPRRFLRPASHALPHQPRRPPPGGKTLA
IGGWRRRAVPRAWILHPPRIQHRRRQGRGALPPVPPGIGHSLPPSLPPSL
LPSLPLSIPASRLFLHVLGGLWWGFRAVAVSSSSISENFYMSVSLLGFCC
HLWTRVALKCTCPHIGERRDCRGIKREGKEEGKAMSGMIQT back to topmRNA from alignment at CM002468.1:94769..95992+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6253 ID=rna6253|Name=rna6253|organism=Nannochloropsis gaditana|type=mRNA|length=1224bp|location=Sequence derived from alignment at CM002468.1:94769..95992+ (Nannochloropsis gaditana)
tccctccctccctccctcacttcgcccctcctccctcccacgccccccct
cctcccgccccctggAGGCCCGCGTCGGTTTCTACGTCCAGCCAGCCATG
CCCTCCCACATCAACCACGACGGCCTCCCCCAGGCGGAAAAACTCTGGCG
ATTGGCGGGTGGAGACGAAGAGCGGTGAGATGAAAACGTGGTTTTCAAGC
CTTCCGTTCATATGGTGCCCCCTTTTTGTGCGGGGAGACTAGCATGTGGT
CATTCCCCTTGATATATTCCCCTCGGCGGGTGAAGTGAGGCCAACCCCGT
GGGACCTCCAGACTGTCTCACCCTGCCCCTgtacccctcccttcgcccct
ccttcctctcggccATAACGCAGGTACCCCGAGCATGGATCCTTCATCCG
CCTCGGATTCAACACCGACGACGTCAGGGCCGTGGGGCGCTTCCTCCAGT
CCCTCCGGGGATAGGacattcccttcctccctcccttcctccctccctcc
tcccctccctccctctctccatccctgcctcccgtcTTTTTTTGCATGTG
TTGGGCGGTCTGTGGTGGGGATTCCGTGCCGTTGCTGTATCATCGTCATC
CATCTCTGAAAATTTTTACATGTCGGTGAGCCTTTTAGGTTTCTGTTGTC
ACTTGTGGACCCGAGTGGCCTTAAAATGCACTTGCCCCCATATTGGGGAA
CGACGCGATTGTCGAGGAATCaaacgggaggggaaggaagagggcaaagC
CATGTCGGGCATGATACAAACATGAGGTTTACATGCTCACTGCCTGCCTC
GAACATTAGCTTGTAAGGATGTAGGAGAGTACGTGGAACCGGTGAATGTA
ACTGGTGTAACATTGTAATCAAAAGAAAGGTACGCACGGACTCGAGAGGG
TGGGTATCGTGGGTTTTGTCAAACAATATCAGCACAGTAGGCTGTGTGCA
TGTTTGGTATGCATGCATGCAATCCCTTTAAAGGAATAGGAGGCTTTATC
AAGCGTACAGAGCAAATGCATTTTCGCGGCGCGAATTAAGAAAAAAGGTG
CATtcgagggaagggaaagacgtAAAGGACGCCAGTGTCTTAATACCTGT
AATATAGGACTCCCGAGCAACCAACTTGTTTCCCGGCCAGACGAGAATCA
AAAAGCATGTAGAATACATTATATCATGAGGATACCGAGCAATGAGGATA
AAGAGATCATATAGCAAAACTTGC back to topCoding sequence (CDS) from alignment at CM002468.1:94769..95992+ >rna6253 ID=rna6253|Name=rna6253|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at CM002468.1:94769..95992+ (Nannochloropsis gaditana)
tccctccctccctccctcacttcgcccctcctccctcccacgccccccct
cctcccgccccctggAGGCCCGCGTCGGTTTCTACGTCCAGCCAGCCATG
CCCTCCCACATCAACCACGACGGCCTCCCCCAGGCGGAAAAACTCTGGCG
ATTGGCGGGTGGAGACGAAGAGCGGTACCCCGAGCATGGATCCTTCATCC
GCCTCGGATTCAACACCGACGACGTCAGGGCCGTGGGGCGCTTCCTCCAG
TCCCTCCGGGGATAGGacattcccttcctccctcccttcctccctccctc
ctcccctccctccctctctccatccctgcctcccgtcTTTTTTTGCATGT
GTTGGGCGGTCTGTGGTGGGGATTCCGTGCCGTTGCTGTATCATCGTCAT
CCATCTCTGAAAATTTTTACATGTCGGTGAGCCTTTTAGGTTTCTGTTGT
CACTTGTGGACCCGAGTGGCCTTAAAATGCACTTGCCCCCATATTGGGGA
ACGACGCGATTGTCGAGGAATCaaacgggaggggaaggaagagggcaaag
CCATGTCGGGCATGATACAAACATGAtccctccctccctccctcacttcg
cccctcctccctcccacgccccccctcctcccgccccctggAGGCCCGCG
TCGGTTTCTACGTCCAGCCAGCCATGCCCTCCCACATCAACCACGACGGC
CTCCCCCAGGCGGAAAAACTCTGGCGATTGGCGGGTGGAGACGAAGAGCG
GTACCCCGAGCATGGATCCTTCATCCGCCTCGGATTCAACACCGACGACG
TCAGGGCCGTGGGGCGCTTCCTCCAGTCCCTCCGGGGATAGGacattccc
ttcctccctcccttcctccctccctcctcccctccctccctctctccatc
cctgcctcccgtcTTTTTTTGCATGTGTTGGGCGGTCTGTGGTGGGGATT
CCGTGCCGTTGCTGTATCATCGTCATCCATCTCTGAAAATTTTTACATGT
CGGTGAGCCTTTTAGGTTTCTGTTGTCACTTGTGGACCCGAGTGGCCTTA
AAATGCACTTGCCCCCATATTGGGGAACGACGCGATTGTCGAGGAATCaa
acgggaggggaaggaagagggcaaagCCATGTCGGGCATGATACAAACAT
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