rna6145, rna6145 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6145
Unique Name	rna6145
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1761
Alignment location	CM002467.1:693096..695451 -

Link to JBrowse

Properties


Property Name	Value
Product	mitogen-activated protein kinase kinase 6
Orig transcript id	gnl\|cribi\|Naga_100260g4.1396.mrna
Orig protein id	gnl\|cribi\|Naga_100260g4.1396
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:693096..695451 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100260g4	gene5936	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24540.1	cds6130	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6145	rna6145-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:693096..695451-
coding sequence from alignment at CM002467.1:693096..695451-

mRNA sequence

>rna6145 ID=rna6145|Name=rna6145|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp
AAAGCGCCTCTCGGAAAGAAGAAGAAGATAGAAATGGACTCGGAAAGCGA
CTCTGAGGCAAGCAGCGAGGAGGAAACGCAGTCGTCGAGCGAGGAGGAAG
AGGAAGGCGAAGAGGAAGAGGAGGAGGAAGACGAAGAGGAAGAGGAAGAC
GAAGAGGAGGACGAAAATTTGGATGATGCTTCCCATTCCTCCGGTAGCCA
GGTTTCTCATCCGGCATCTGGCTCGAAAGCCCTCAAAGCGCCCACTCAAA
AGCGTCCCGGACCTGCCCCCGGCGCCGGGGACAAAGGAAAAAAAAGACAG
GCATCTTCCAGTCCGGCTTCCCCTGCCCTGAATTTCTCCAGTAAGGCAGC
CAAAGCAAAGTCGTCGAATCAAAAGCCTGACTACCCTGCCAAGGGCATGG
CAAAGAAGAAAACTGGCAACAGCAGCAAACGCGGTGCGAGTGATATGGAA
GTCGAAGACGGGACGATTGAAGCCGAAAATTCTCCGACCATCGCGGCTGA
AAGTACGAAAGAGTGCCCGGACCCTGCCTCTTCCTCCTCCCATACCCCCT
CCGAGGCGCGTGACACCAAATTGACACCGGGAACTAGCAGGGCTGCTTCC
TCCCCCCCCCTCCCATGTCCCAACGCCGATAAGCTCACTGCAGCCATCGA
GAAGCCGAAAGCCCGGGCGGGGGATGCCAAAAGTGTCATCCTTGAGTACA
TGATTAACGCCGCGCGGCCTTACGGGGCTCAGAATGTTTTTGACAACCTA
CACAAGACCATCGGCAAGGGCACCGTGCAGACCGTGCTGGATCAACTCGC
TGACAGTGGCGCCATCACCCGGAAAGAATTCGGGAAATCCAAGATATACG
TGGCCCCGCCCCCAGCCTTAGACCCGACAGAACTTGCCCGCGAAACGGCC
GCGTTGGAAAGCCGGTGGAAGGCCTTGCAGGAAGAGAAAAGCCAGTGGAC
GGGGAGAAAAGGGAGCCTGGAGGGCGAGGTCCGGAGGTTGAACCAGGGTC
TGGACGATACTGCCTTGGAGACGGCCTTGACGACATTAATAGCAGAAAAT
GCGGCGCGCGAGAAGACGCTGGAGAAACTCCGGCTGAAAGAAGGGAAGCG
AGAAGGCAGGGCGCCCATGGATAAGCTCCAAATGAAGCGCTTGGAAGAGG
AGGTGGGATCCTTCAGGAAGGTCTGGGCCGCGCGCAAGCGACAGGCGATG
GAGGCCGTGGAGTGCGTGGCCGACGGGGCGGGGAAACGGGTGATCGACAT
CATCGATATGATGGGCATAGAAACGGACGAGGAGGCGGGTGTCAGCCTCC
CTGCCTTGGGTGGAGGGACGTGAGGTGGACCGACCCTTTGGCTTGCATGG
GCCACGGGGTTACATTGGGAGAAGTGACCGAAGGTGCCTCGGCATTTTTT
TTTCGCTGTTCGGACGTCCGGGGATAGGAGAAAATAATATGGAAAGTAGA
GATGTAAAAAGCGGCTGGGGAGTGGAAAGGAGAGTTGGATGTGGTGTGCA
ACGGGCCAAGAATGCCTGAGTGAGCATGCGTGTTCGTATGTGAAATAGCG
GTCGAAATCAGTACGCTATCAAAAGGCAGCGACGTAATGGACACATGAAG
CCTTCGAAAAGACAGAGGGGTGGAAGAAGTTGGAGGACGGGCACACATCC
TGACGGGCTTTTTGAAAACGTGAACACAGCGCTATGTCGAGGACAATCAG
CAAGGTTGATTGATTGATTGAGACTGGAAAAAAAAAGAAATGACCACGAC
GGACGGGGTTA

protein sequence of rna6145

>rna6145-protein ID=rna6145-protein|Name=rna6145|organism=Nannochloropsis gaditana|type=polypeptide|length=700bp
MAQEYGLQEPRSPSMEQCFAEKLRLTVEVDPTPPPLTIGSESAFSPLQLE
IPTDHGNSTSSGDCVSDDTSSVGDGRVCEDWSSAASSSSLRPHSGRKKGA
KDAKTLCISKSGSIHIGGFEIRKSGLFQKNTPNDLYANQSSVTSTPPKSS
GGREKRTGGTPLSLTLDEGSVATNDMASCPSSGGSLGAHGCADETPGQGL
HDCLVPLGVLGRGAGGSVWQGIHVPSLRLVAVKTIPVFEEGRRLQMVQEL
RSLYWNLAPFLPPSSSLAPSHSPPRTIPASPPPFPSAADGPGPIGGTGGR
GGQGLVGEPSGQVLIGTGAHRGSPVGGMDAGASRGGGGCPQLVSFYDAYA
NPREGTVSIVQEFMDAGSLQDVVDAGGCADEAVLAHMAREVLLGLAYLHA
RRQIHRDIKPANLLLNHRGEVKISDFGLVRHFDASISRADTFVGTFTYMS
PERICGGEYGYSADIWGVGLTLVTCALGRLPYEDAGGYWELVSALKEREP
PSLPRSEFSSEFRDFVRQCLNKEPSKRPTARYLLDRHPFLRQTRRAVGQK
SPTVSAAAPEIGDTKHVERKGLGRVEWEEEEAGEDVGAGSTSARRELSDI
LEAVKSYYRRLWQDMGLHGSSNTHSSNSQGGDDPDVKKGGALMLPNAQME
ALKGLAGQLGLPLRVVRAAFRQMLHEMIKEQCMEAGAEEGEEDGQAWGRE

mRNA from alignment at CM002467.1:693096..695451-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6145 ID=rna6145|Name=rna6145|organism=Nannochloropsis gaditana|type=mRNA|length=2356bp|location=Sequence derived from alignment at CM002467.1:693096..695451- (Nannochloropsis gaditana)
CATTTCGACGCCTCTGTCTCCCTCAGGAAAGTTGCCGGGGCCATTGAAAG
CACGGCATGGCGCAGGAATACGGGCTGCAAGAGCCACGTTCACCCAGCAT
GGAACAATGCTTTGCCGAGAAGCTCCGACTCACAGTTGAGGTCGACCCAA
CCCCCCCCCCTTTGACCATCGGCTCAGAGAGCGCCTTCAGTCCCCTTCAA
TTGGAAATCCCGACGGATCATGGCAACAGCACCAGCAGTGGAGATTGTGT
AAGCGATGACACCAGCAGTGTCGGTGACGGACGGGTGTGCGAGGATTGGT
CCTCGGCCGCCTCCTCTTCGTCCTTGCGGCCCCATAGTGGACGGAAAAAA
GGTGCCAAGGATGCGAAGACGCTTTGTATATCCAAAAGTGGATCGATACA
CATCGGAGGCTTCGAAATACGAAAATCAGGCCTCTTCCAGAAAAATACGC
CGAATGACCTATACGCTAACCAATCTTCAGTGACCTCAACCCCTCCGAAG
TCGTCCGGAGGACGGGAGAAACGCACTGGTGGCACCCCTCTCTCGCTCAC
CCTCGACGAGGGATCGGTCGCTACAAACGACATGGCTTCGTGTCCTTCCA
GCGGCGGCAGCCTAGGTGCGCACGGCTGTGCCGACGAAACCCCCGGGCAG
GGCCTACACGACTGCCTGGTCCCCTTGGGAGTGTTAGGCCGTGGCGCGGG
TGGGAGCGTCTGGCAAGGCATTCACGTCCCCAGCCTGCGCCTGGTGGCCG
TCAAGACCATCCCCGTCTTTGAAGAAGGGAGGCGGCTTCAGATGGTGCAG
GAGCTCCGGTCCTTGTACTGGAATCTCGCGCCTTTCCTGCCTCCCTCCTC
CTCCCTGGCGCCCTCTCATTCCCCCCCCCGCACCATCCCGGCCTCCCCTC
CCCCGTTTCCCTCCGCGGCAGACGGCCCGGGACCGATCGGTGGGACGGGC
GGGCGTGGAGGACAAGGGCTTGTCGGCGAACCATCCGGACAGGTCCTGAT
TGGCACAGGAGCACACCGCGGAAGTCCCGTGGGGGGTATGGACGCAGGCG
CTTCCCGAGGGGGAGGAGGTTGCCCCCAGCTTGTCTCCTTCTACGACGCC
TACGCGAATCCGCGGGAAGGCACCGTGAGCATAGTCCAAGAATTCATGGA
CGCAGGCTCGCTCCAAGACGTGGTCGACGCCGGGGGCTGTGCGGACGAGG
CCGTCCTGGCCCACATGGCCCGCGAAGTCTTGCTAGGCCTGGCGTACCTG
CACGCACGCCGGCAAATCCACCGGGACATTAAACCCGCCAACCTCCTCCT
GAATCACCGGGGCGAGGTAAAAATCAGCGATTTTGGGCTGGTCCGGCACT
TCGATGCCAGTATCTCCCGGGCGGATACTTTTGTCGGGACCTTCACTTAC
ATGTCGCCGGAGCGAATTTGTGGTGGGGAGTACGGGTATTCCGCGGATAT
TTGGGGGGTGGGTCTGACGCTCGTGACGTGTGCTCTGGGACGATTGCCTT
ACGAAGACGCAGGAGGCTACTGGGAGCTTGTCTCCGCGCTCAAGGAAAGG
GAACCACCGTCCCTCCCGCGCTCGGAATTTTCCTCGGAGTTTCGGGATTT
CGTTCGGCAATGTTTGAACAAAGAGCCGAGCAAACGGCCTACGGCCCGTT
ACCTGTTGGACCGTCATCCCTTCTTGCGACAAACAAGAAGGGCCGTGGGC
CAGAAGTCACCGACCGTGTCAGCTGCTGCTCCCGAGATTGGGGATACCAA
GCACGTTGAGAGAAAAGGACTCGGGAGAGTGGAATGGGAGGAAGAGGAGG
CGGGGGAGGATGTGGGAGCTGGATCGACGAGCGCGCGGAGGGAACTGTCG
GACATCCTGGAAGCGGTTAAATCCTATTATCGGCGCCTGTGGCAAGACAT
GGGCCTCCATGGCAGCAGCAACACCCACAGCAGCAACAGTCAGGGCGGCG
ATGACCCGGACGTAAAGAAAGGGGGAGCACTCATGTTGCCCAACGCGCAA
ATGGAGGCATTGAAGGGGCTGGCAGGACAACTGGGTCTTCCCTTAAGGGT
GGTTCGCGCCGCTTTTCGGCAGATGTTGCATGAGATGATCAAGGAGCAGT
GCATGGAGGCCGGGGCGGAGGAAGGGGAGGAAGACGGGCAGGCATGGGGG
CGGGAGTAGGCGGACGAGAGAGAACGGGCGTCCGAAGGCGTGTGGGAGAC
GAGGTCATTGCACATTTGTATAAAGGTATCCCCAAAATGCGTCTTTACAA
AAATTGAACGCGCGCTGTGTGCCGAAGTGGCCAGGCGGAAATGTAAATGG
GCCGCCAAACCCCGCCCGTACACATGGCGAAAGAAAATTTTGACAACACG
TACAGA

Coding sequence (CDS) from alignment at CM002467.1:693096..695451-

>rna6145 ID=rna6145|Name=rna6145|organism=Nannochloropsis gaditana|type=CDS|length=2103bp|location=Sequence derived from alignment at CM002467.1:693096..695451- (Nannochloropsis gaditana)
ATGGCGCAGGAATACGGGCTGCAAGAGCCACGTTCACCCAGCATGGAACA
ATGCTTTGCCGAGAAGCTCCGACTCACAGTTGAGGTCGACCCAACCCCCC
CCCCTTTGACCATCGGCTCAGAGAGCGCCTTCAGTCCCCTTCAATTGGAA
ATCCCGACGGATCATGGCAACAGCACCAGCAGTGGAGATTGTGTAAGCGA
TGACACCAGCAGTGTCGGTGACGGACGGGTGTGCGAGGATTGGTCCTCGG
CCGCCTCCTCTTCGTCCTTGCGGCCCCATAGTGGACGGAAAAAAGGTGCC
AAGGATGCGAAGACGCTTTGTATATCCAAAAGTGGATCGATACACATCGG
AGGCTTCGAAATACGAAAATCAGGCCTCTTCCAGAAAAATACGCCGAATG
ACCTATACGCTAACCAATCTTCAGTGACCTCAACCCCTCCGAAGTCGTCC
GGAGGACGGGAGAAACGCACTGGTGGCACCCCTCTCTCGCTCACCCTCGA
CGAGGGATCGGTCGCTACAAACGACATGGCTTCGTGTCCTTCCAGCGGCG
GCAGCCTAGGTGCGCACGGCTGTGCCGACGAAACCCCCGGGCAGGGCCTA
CACGACTGCCTGGTCCCCTTGGGAGTGTTAGGCCGTGGCGCGGGTGGGAG
CGTCTGGCAAGGCATTCACGTCCCCAGCCTGCGCCTGGTGGCCGTCAAGA
CCATCCCCGTCTTTGAAGAAGGGAGGCGGCTTCAGATGGTGCAGGAGCTC
CGGTCCTTGTACTGGAATCTCGCGCCTTTCCTGCCTCCCTCCTCCTCCCT
GGCGCCCTCTCATTCCCCCCCCCGCACCATCCCGGCCTCCCCTCCCCCGT
TTCCCTCCGCGGCAGACGGCCCGGGACCGATCGGTGGGACGGGCGGGCGT
GGAGGACAAGGGCTTGTCGGCGAACCATCCGGACAGGTCCTGATTGGCAC
AGGAGCACACCGCGGAAGTCCCGTGGGGGGTATGGACGCAGGCGCTTCCC
GAGGGGGAGGAGGTTGCCCCCAGCTTGTCTCCTTCTACGACGCCTACGCG
AATCCGCGGGAAGGCACCGTGAGCATAGTCCAAGAATTCATGGACGCAGG
CTCGCTCCAAGACGTGGTCGACGCCGGGGGCTGTGCGGACGAGGCCGTCC
TGGCCCACATGGCCCGCGAAGTCTTGCTAGGCCTGGCGTACCTGCACGCA
CGCCGGCAAATCCACCGGGACATTAAACCCGCCAACCTCCTCCTGAATCA
CCGGGGCGAGGTAAAAATCAGCGATTTTGGGCTGGTCCGGCACTTCGATG
CCAGTATCTCCCGGGCGGATACTTTTGTCGGGACCTTCACTTACATGTCG
CCGGAGCGAATTTGTGGTGGGGAGTACGGGTATTCCGCGGATATTTGGGG
GGTGGGTCTGACGCTCGTGACGTGTGCTCTGGGACGATTGCCTTACGAAG
ACGCAGGAGGCTACTGGGAGCTTGTCTCCGCGCTCAAGGAAAGGGAACCA
CCGTCCCTCCCGCGCTCGGAATTTTCCTCGGAGTTTCGGGATTTCGTTCG
GCAATGTTTGAACAAAGAGCCGAGCAAACGGCCTACGGCCCGTTACCTGT
TGGACCGTCATCCCTTCTTGCGACAAACAAGAAGGGCCGTGGGCCAGAAG
TCACCGACCGTGTCAGCTGCTGCTCCCGAGATTGGGGATACCAAGCACGT
TGAGAGAAAAGGACTCGGGAGAGTGGAATGGGAGGAAGAGGAGGCGGGGG
AGGATGTGGGAGCTGGATCGACGAGCGCGCGGAGGGAACTGTCGGACATC
CTGGAAGCGGTTAAATCCTATTATCGGCGCCTGTGGCAAGACATGGGCCT
CCATGGCAGCAGCAACACCCACAGCAGCAACAGTCAGGGCGGCGATGACC
CGGACGTAAAGAAAGGGGGAGCACTCATGTTGCCCAACGCGCAAATGGAG
GCATTGAAGGGGCTGGCAGGACAACTGGGTCTTCCCTTAAGGGTGGTTCG
CGCCGCTTTTCGGCAGATGTTGCATGAGATGATCAAGGAGCAGTGCATGG
AGGCCGGGGCGGAGGAAGGGGAGGAAGACGGGCAGGCATGGGGGCGGGAG
TAG

Synonyms

Publications