EWM24632.1, cds6048 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|585106152|gb|EWM24632.1| (galactose-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1895.17 bits (4908), Expect = 0.000e+0 Identity = 922/922 (100.00%), Postives = 922/922 (100.00%), Query Frame = 0 Query: 1 MEASLMCRGQSSSTSPATAVLAQGMRSRIFTGPAWNISRPVWIGFLLLCALVVATMGQGGSHGLSHDSARDMNTPADVAPSPDSTLTVPSAPGSPITTGGFSGPSGGFRILETLLGSKGSHVNKGEGAPSTSRADGSVESYQAGGRVVVDSRTHPPESEISEQGQGAGLPPVIAANLREALPPAFIQEGPVQELPKEQKQGHAQPEQKVGLTNPSHPKAKGPQAEVNYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQRQKINLGSHLEAIGPSDAIGSHKEVEGGGDGGSVNQTCLFDGDCPAPEGEETPFMPADNVEGDLSTIDTSTAEDDLGAHSITPPASKAPKPSKANPGNERVQEDLQQTHSTTVENGLQGTGREGVVQHDDLDRNLNGTGSDDDLQRINSSLPFGRDEALKGGASGDECTGEKMSEHSPAKEPTNEQLRKDLPSRNPRHEDGEILVESGGTAVARGKAIPSSGNLHAENSEEQAVARPPSSADLPLPLDAPKVHDTTAKSSGQSLEALHPTASSAAESEGEDIAKAREPENGATAEAEFYEASASGGKPLVSPTRDSNGDGVVTPIPHMGPGSHAKPPTQVHDGGSPQYTAASTTSTTTVLATVSGAPAKTELMTRFRHQCLQQMRLSDFKKQKLAKLQDDPRTKDHGTGSTATSLGNGSPYDNIFKTLMDEMASLEINQSIFDVYVSNLHSCFVQVVDDVLLEQDRARLEALETIGLLQARLQSQAAVNEQFLRRMQRLESLSLAGGLAWIALIACLVLAAGAQRALWKRWQGIATIEQPEM 922 MEASLMCRGQSSSTSPATAVLAQGMRSRIFTGPAWNISRPVWIGFLLLCALVVATMGQGGSHGLSHDSARDMNTPADVAPSPDSTLTVPSAPGSPITTGGFSGPSGGFRILETLLGSKGSHVNKGEGAPSTSRADGSVESYQAGGRVVVDSRTHPPESEISEQGQGAGLPPVIAANLREALPPAFIQEGPVQELPKEQKQGHAQPEQKVGLTNPSHPKAKGPQAEVNYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQRQKINLGSHLEAIGPSDAIGSHKEVEGGGDGGSVNQTCLFDGDCPAPEGEETPFMPADNVEGDLSTIDTSTAEDDLGAHSITPPASKAPKPSKANPGNERVQEDLQQTHSTTVENGLQGTGREGVVQHDDLDRNLNGTGSDDDLQRINSSLPFGRDEALKGGASGDECTGEKMSEHSPAKEPTNEQLRKDLPSRNPRHEDGEILVESGGTAVARGKAIPSSGNLHAENSEEQAVARPPSSADLPLPLDAPKVHDTTAKSSGQSLEALHPTASSAAESEGEDIAKAREPENGATAEAEFYEASASGGKPLVSPTRDSNGDGVVTPIPHMGPGSHAKPPTQVHDGGSPQYTAASTTSTTTVLATVSGAPAKTELMTRFRHQCLQQMRLSDFKKQKLAKLQDDPRTKDHGTGSTATSLGNGSPYDNIFKTLMDEMASLEINQSIFDVYVSNLHSCFVQVVDDVLLEQDRARLEALETIGLLQARLQSQAAVNEQFLRRMQRLESLSLAGGLAWIALIACLVLAAGAQRALWKRWQGIATIEQPEM Sbjct: 1 MEASLMCRGQSSSTSPATAVLAQGMRSRIFTGPAWNISRPVWIGFLLLCALVVATMGQGGSHGLSHDSARDMNTPADVAPSPDSTLTVPSAPGSPITTGGFSGPSGGFRILETLLGSKGSHVNKGEGAPSTSRADGSVESYQAGGRVVVDSRTHPPESEISEQGQGAGLPPVIAANLREALPPAFIQEGPVQELPKEQKQGHAQPEQKVGLTNPSHPKAKGPQAEVNYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQRQKINLGSHLEAIGPSDAIGSHKEVEGGGDGGSVNQTCLFDGDCPAPEGEETPFMPADNVEGDLSTIDTSTAEDDLGAHSITPPASKAPKPSKANPGNERVQEDLQQTHSTTVENGLQGTGREGVVQHDDLDRNLNGTGSDDDLQRINSSLPFGRDEALKGGASGDECTGEKMSEHSPAKEPTNEQLRKDLPSRNPRHEDGEILVESGGTAVARGKAIPSSGNLHAENSEEQAVARPPSSADLPLPLDAPKVHDTTAKSSGQSLEALHPTASSAAESEGEDIAKAREPENGATAEAEFYEASASGGKPLVSPTRDSNGDGVVTPIPHMGPGSHAKPPTQVHDGGSPQYTAASTTSTTTVLATVSGAPAKTELMTRFRHQCLQQMRLSDFKKQKLAKLQDDPRTKDHGTGSTATSLGNGSPYDNIFKTLMDEMASLEINQSIFDVYVSNLHSCFVQVVDDVLLEQDRARLEALETIGLLQARLQSQAAVNEQFLRRMQRLESLSLAGGLAWIALIACLVLAAGAQRALWKRWQGIATIEQPEM 922
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|299473582|emb|CBN77977.2| (hypothetical protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 161.384 bits (407), Expect = 7.113e-41 Identity = 76/155 (49.03%), Postives = 109/155 (70.32%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQR 381 NYA+ +GAV+L++S + G +NLL D KDKYA SPC+ +W ++ LSEDI + SLV+ ++EK+SS++K+FQVL S P + W++LGTF AK GEQ F++ P +ARYLK + LSH+ EFYCT+SQ+KV GST+ + F +WQ+ Sbjct: 34 NYASRDSGAVLLEASPASKGMQNLLLDSKDKYAISPCEDKQWAVLGLSEDILVRSLVIGSHEKYSSLLKEFQVLASQTYP-------VNEWLDLGTFTAKFVQGEQTFEIPQPAFARYLKFKFLSHYGDEFYCTVSQVKVHGSTMLESFQHEWQQ 181
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|224008739|ref|XP_002293328.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970728|gb|EED89064.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 170.244 bits (430), Expect = 1.472e-39 Identity = 78/154 (50.65%), Postives = 111/154 (72.08%), Query Frame = 0 Query: 226 VNYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDW 379 V+YA++ AGA +L+ S SL G NLL D DKYA +PC++ K+++I LSEDI + + L+NYE++SS V++FQVL S + P+ S+ W +LGT+ A K+GEQ F+++ P +ARYLK R +SH+ +E YCTLSQIKV GST+ QGF + W Sbjct: 307 VDYASKLAGAQILEKSPSLKGTSNLLTGDIDKYAIAPCEEKKYVVIGLSEDILVKRIKLSNYERYSSHVREFQVLASQEYPAP-----SEYWNDLGTYTALSKSGEQTFELNEPAWARYLKFRFMSHYGKEHYCTLSQIKVHGSTMLQGFHEQW 455
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|673046401|ref|XP_008877161.1| (hypothetical protein, variant 3 [Aphanomyces invadans] >gi|673046403|ref|XP_008877162.1| hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574467376|gb|ETV94400.1| hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574467377|gb|ETV94401.1| hypothetical protein, variant 3 [Aphanomyces invadans]) HSP 1 Score: 147.132 bits (370), Expect = 1.125e-33 Identity = 83/216 (38.43%), Postives = 119/216 (55.09%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPC-DQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQRQKINLGSHLEAIGPSDAIGSHKEVEGGGDGGSVNQTCLFDGDCPAPEGEETPFMPADNVE 441 NYA++ +GA VL + G+ NLL DKD+Y PC + KW++++LSEDI D++ +ANYEKFSS +DF VL S+ PS D W+ LG F A + GEQ F+ + RY+K+R++SH+ E+YCT+SQI+V G T Q Q +K + + ++ PS A+ V N C F PAPE + F+ A E Sbjct: 117 NYASKDSGATVLDHAPGTKGSVNLLVPDKDRYMLIPCASEKKWVVVSLSEDIHADAIAIANYEKFSSPTRDFLVLGSINYPS-------DTWVVLGNFTASHRNGEQLFEFHESHHVRYIKLRMMSHYGSEYYCTMSQIRVFGRTFTQVIS---QLEK-TIEAEAQSPSPSPAV---PLVPSSTTPTDSNLLCPF----PAPESPISFFLHATTFE 314
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|695401592|ref|XP_009522807.1| (hypothetical protein PHYSODRAFT_460966, partial [Phytophthora sojae] >gi|348680274|gb|EGZ20090.1| hypothetical protein PHYSODRAFT_460966, partial [Phytophthora sojae]) HSP 1 Score: 147.132 bits (370), Expect = 2.770e-33 Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQ-SKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQ 373 NYA+ AGA +L ++ NLL DKD+Y +PC KW++I+LSED+ D++ +ANYEKFSS VKDF VL SV P+ D W+ LG F A GEQ FQ+D ++ RY+K R LSH+ E+YCTLSQ++V G T Q Sbjct: 73 NYASLDAGATILDAAPDTKSPTNLLVPDKDRYMLTPCSNPRKWVVISLSEDVHADAIAIANYEKFSSPVKDFIVLGSVNYPT-------DTWLVLGNFTAAHSNGEQIFQLDAQQHVRYIKFRFLSHYGSEYYCTLSQLRVFGRTFTQ 213
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|568024581|gb|ETL98611.1| (hypothetical protein L917_04341 [Phytophthora parasitica]) HSP 1 Score: 147.132 bits (370), Expect = 5.548e-33 Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQ-SKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQ 373 NYA+ AGA +L ++ NLL DKD+Y +PC KW++I+LSED+ D++ +ANYEKFSS VKDF VL SV P+ D W+ LG F A GEQ FQ+D ++ RY+K R LSH+ E+YCTLSQ++V G T Q Sbjct: 116 NYASLDAGATILDAAPDTKSPTNLLVPDKDRYMLTPCSNPRKWVVISLSEDVHADAIAIANYEKFSSPVKDFIVLGSVNYPT-------DTWLVLGNFTATHTNGEQIFQLDSQQHVRYIKFRFLSHYGSEYYCTLSQLRVFGRTFTQ 256
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|675186063|ref|XP_008901916.1| (hypothetical protein PPTG_08920 [Phytophthora parasitica INRA-310] >gi|566029261|gb|ETI52172.1| hypothetical protein F443_04621 [Phytophthora parasitica P1569] >gi|567966856|gb|ETK92047.1| hypothetical protein L915_04498 [Phytophthora parasitica] >gi|567995291|gb|ETL45429.1| hypothetical protein L916_04465 [Phytophthora parasitica] >gi|568055016|gb|ETM51779.1| hypothetical protein L914_04442 [Phytophthora parasitica] >gi|568098170|gb|ETN12905.1| hypothetical protein PPTG_08920 [Phytophthora parasitica INRA-310] >gi|570332986|gb|ETO80934.1| hypothetical protein F444_04656 [Phytophthora parasitica P1976] >gi|570957006|gb|ETP21985.1| hypothetical protein F441_04600 [Phytophthora parasitica CJ01A1] >gi|570992380|gb|ETP49892.1| hypothetical protein F442_04670 [Phytophthora parasitica P10297]) HSP 1 Score: 147.132 bits (370), Expect = 5.700e-33 Identity = 71/148 (47.97%), Postives = 94/148 (63.51%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQ-SKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQ 373 NYA+ AGA +L ++ NLL DKD+Y +PC KW++I+LSED+ D++ +ANYEKFSS VKDF VL SV P+ D W+ LG F A GEQ FQ+D ++ RY+K R LSH+ E+YCTLSQ++V G T Q Sbjct: 116 NYASLDAGATILDAAPDTKSPTNLLVPDKDRYMLTPCSNPRKWVVISLSEDVHADAIAIANYEKFSSPVKDFIVLGSVNYPT-------DTWLVLGNFTATHTNGEQIFQLDSQQHVRYIKFRFLSHYGSEYYCTLSQLRVFGRTFTQ 256
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|301094871|ref|XP_002896539.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262109035|gb|EEY67087.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 145.591 bits (366), Expect = 9.282e-33 Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPCDQ-SKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQ 373 NYA+ AGA++L ++ NLL DKD+Y +PC KW++I+LSED+ D++ +ANYEKFSS VK+F VL SV P+ D W+ LG F A GEQ FQ+D ++ RY+K R LSH+ E+YCTLSQ++V G T Q Sbjct: 69 NYASLDAGAIILDAAPDTKSPTNLLVPDKDRYMLTPCSNPRKWVVISLSEDVHADAIAIANYEKFSSPVKEFIVLGSVNYPT-------DTWLVLGNFTATHTNGEQIFQLDAQQHVRYIKFRFLSHYGSEYYCTLSQLRVFGRTFTQ 209
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|673046399|ref|XP_008877160.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574467375|gb|ETV94399.1| hypothetical protein, variant 1 [Aphanomyces invadans]) HSP 1 Score: 145.591 bits (366), Expect = 1.704e-32 Identity = 83/216 (38.43%), Postives = 119/216 (55.09%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPC-DQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQRQKINLGSHLEAIGPSDAIGSHKEVEGGGDGGSVNQTCLFDGDCPAPEGEETPFMPADNVE 441 NYA++ +GA VL + G+ NLL DKD+Y PC + KW++++LSEDI D++ +ANYEKFSS +DF VL S+ PS D W+ LG F A + GEQ F+ + RY+K+R++SH+ E+YCT+SQI+V G T Q Q +K + + ++ PS A+ V N C F PAPE + F+ A E Sbjct: 117 NYASKDSGATVLDHAPGTKGSVNLLVPDKDRYMLIPCASEKKWVVVSLSEDIHADAIAIANYEKFSSPTRDFLVLGSINYPS-------DTWVVLGNFTASHRNGEQLFEFHESHHVRYIKLRMMSHYGSEYYCTMSQIRVFGRTFTQVIS---QLEK-TIEAEAQSPSPSPAV---PLVPSSTTPTDSNLLCPF----PAPESPISFFLHATTFE 314
BLAST of EWM24632.1 vs. NCBI_GenBank
Match: gi|673046405|ref|XP_008877163.1| (hypothetical protein H310_12031 [Aphanomyces invadans] >gi|574467374|gb|ETV94398.1| hypothetical protein H310_12031 [Aphanomyces invadans]) HSP 1 Score: 145.591 bits (366), Expect = 2.524e-32 Identity = 83/216 (38.43%), Postives = 119/216 (55.09%), Query Frame = 0 Query: 227 NYAAEKAGAVVLQSSHSLVGAKNLLDDDKDKYARSPC-DQSKWLIINLSEDIRIDSLVLANYEKFSSMVKDFQVLYSVKCPSLDGDEDSDGWMELGTFQAKEKAGEQRFQVDPPRYARYLKVRLLSHWSREFYCTLSQIKVLGSTLQQGFMDDWQRQKINLGSHLEAIGPSDAIGSHKEVEGGGDGGSVNQTCLFDGDCPAPEGEETPFMPADNVE 441 NYA++ +GA VL + G+ NLL DKD+Y PC + KW++++LSEDI D++ +ANYEKFSS +DF VL S+ PS D W+ LG F A + GEQ F+ + RY+K+R++SH+ E+YCT+SQI+V G T Q Q +K + + ++ PS A+ V N C F PAPE + F+ A E Sbjct: 117 NYASKDSGATVLDHAPGTKGSVNLLVPDKDRYMLIPCASEKKWVVVSLSEDIHADAIAIANYEKFSSPTRDFLVLGSINYPS-------DTWVVLGNFTASHRNGEQLFEFHESHHVRYIKLRMMSHYGSEYYCTMSQIRVFGRTFTQVIS---QLEK-TIEAEAQSPSPSPAV---PLVPSSTTPTDSNLLCPF----PAPESPISFFLHATTFE 314 The following BLAST results are available for this feature:
BLAST of EWM24632.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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