EWM24649.1, cds6023 (CDS) Nannochloropsis gaditana

Overview
NameEWM24649.1
Unique Namecds6023
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:426263..427330 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24649.1
Productbiotin lipoate protein ligase-like protein
Orig transcript idgnl|cribi|Naga_100055g16.7333.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:426263..427330 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004077biotin-[acetyl-CoA-carboxylase] ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR004408Biotin_CoA_COase_ligase
IPR004143BPL_LPL_catalytic
Homology
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|585106171|gb|EWM24649.1| (biotin lipoate protein ligase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0
Query:    1 MHLHRFTVNRISLRLTVACACCCVFANTSGTAVSAAFVAVGFSSSVSFRLAPSIVPSRNPPVLGIQSGSARAGKERRCHSATSMSAFAAGEDIEVGDGTLLHFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLRDGGAVVPLALETDGRLRVRDLTSGATRLLTAEYLH 355
            MHLHRFTVNRISLRLTVACACCCVFANTSGTAVSAAFVAVGFSSSVSFRLAPSIVPSRNPPVLGIQSGSARAGKERRCHSATSMSAFAAGEDIEVGDGTLLHFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLRDGGAVVPLALETDGRLRVRDLTSGATRLLTAEYLH
Sbjct:    1 MHLHRFTVNRISLRLTVACACCCVFANTSGTAVSAAFVAVGFSSSVSFRLAPSIVPSRNPPVLGIQSGSARAGKERRCHSATSMSAFAAGEDIEVGDGTLLHFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLRDGGAVVPLALETDGRLRVRDLTSGATRLLTAEYLH 355          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|298708896|emb|CBJ30853.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 184.111 bits (466), Expect = 4.099e-52
Identity = 118/299 (39.46%), Postives = 159/299 (53.18%), Query Frame = 0
Query:  102 HFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDA---LALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQ------------------------------------------ARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLRDGG-AVVPLALETDGRLRVRDLTSGATRLLTAEYL 354
             F W+  V ST D ++TL+       ++Q+G DA    A++A  Q++GRGT GRAW+G  GN+FLTVA+P   L  +  P++L+PLR+GTLIA EI R LP    +                                           RV LKWPNDVLL   KV+G+LIE +    + LVGIGVNV   P VP  G DRGR AACLA  G +    +  R+LS A+   + +W  G+  D+A + +A+W +   W    ++RD G AV P+ +  DGRLRV D  +G   LLT EYL
Sbjct:   17 RFTWLESVNSTMDEVKTLI-------VNQEGSDAKRVFAVAAREQLRGRGTKGRAWIGLPGNVFLTVAIP---LDRVPVPLSLIPLRVGTLIAPEIQRRLPRHRQEERPPLSPPPSPSASPREARTAEAAEPEPEPKPEPEPKPEPEPPRVSLKWPNDVLLGGSKVAGVLIEAE--LPFLLVGIGVNVRNKPEVPQNGPDRGRPAACLADFGADS-TDEAVRELSAALTEKLCSWASGT--DSASTAVAEWSRWVDWSLPLEIRDEGRAVRPIGVAPDGRLRVVDPATGEEELLTTEYL 300          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|676387557|ref|XP_009037057.1| (hypothetical protein AURANDRAFT_64251 [Aureococcus anophagefferens] >gi|323452461|gb|EGB08335.1| hypothetical protein AURANDRAFT_64251 [Aureococcus anophagefferens])

HSP 1 Score: 159.458 bits (402), Expect = 5.130e-43
Identity = 115/289 (39.79%), Postives = 148/289 (51.21%), Query Frame = 0
Query:   69 SARAGKERRCHSATSMSAFAAGEDIEVGDGTLLHFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMG-GAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDT-ARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLRDGGAVV-PLALETDGRLRVRDLTSGATRLLTAEYL 354
            +A +G+ R    A S  AF               + W+ E +STQDA + +L      + +      +A++   Q  GRGT GR W   G GN+ LTVAL  R L     P+TL+PLR+G  +AR +   L      A V LKWPNDVLL+  KV G+LIE DG +   LVG+G+NVA  P VP  G +RGR A  LA CG      +  A+DL    A  ++TW  G   D A +++A W     W     LRD   VV P+ L  DGRLRVR    G  R L AEYL
Sbjct:   11 AAHSGRRRMAAQAQSCDAF--------------EWHWLRETKSTQDAAKQILKQRVVGNSNGHDGKHVAVATAHQTAGRGTRGRTWNDDGRGNVALTVALDMRHLP--LKPVTLVPLRVGVEVARVLADHLEDAPGCA-VSLKWPNDVLLNGKKVCGVLIEADGDA--LLVGVGINVATHPDVPQAGPERGREATSLAACGATSADAEAIAKDL----AAHLSTWADGV--DDAPTLVAHWSHFVDWSLPLTLRDTSEVVSPVRLLPDGRLRVRPAAGGPERDLVAEYL 274          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|1210519482|dbj|GAX21606.1| (hypothetical protein FisN_29Hh040 [Fistulifera solaris])

HSP 1 Score: 147.902 bits (372), Expect = 1.595e-38
Identity = 106/267 (39.70%), Postives = 150/267 (56.18%), Query Frame = 0
Query:  101 LHFVWVPE-VRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQARVQLKWPNDVLLDDGKVSGLLIEM---DGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLR---------DGGAVVPLALETDGRLRVRDLTSGATRLLTAEYL 354
            L F++  E V ST D MRTLL       L+++    +AL A +Q  GRGT GR W   +GN++LTVALP      +  P+TLLPL++G ++A  +  +L    + A+V +KWPNDVL++D KVSG LIE    +   S++LVGIGVNVA+ P +  L     R    L +   E    D A  L + IA ++  W+   + D    ++ +W K A +GK Y+LR         +G  VV + +E DG+LRVRD   G  RLL A+YL
Sbjct:   21 LQFIYKTEPVTSTHDEMRTLL-------LNREEHTCVALVATTQTTGRGTQGRVWKAASGNLYLTVALPH-----VPVPLTLLPLQVGMVVAERVQALLKACSSTAKVTVKWPNDVLIEDAKVSGCLIEHFTNERNLSWFLVGIGVNVAETPPLQDLPGFHKRAPTSLHEWCPEA-SSDMASVLGLEIANALADWIMEEKND-GQPIVEEWRKWAEFGKSYELRGSVVDEEGHEGEVVVTVDIEADGQLRVRD-RQGRERLLVADYL 272          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|1210526346|dbj|GAX14834.1| (hypothetical protein FisN_29Lh040 [Fistulifera solaris])

HSP 1 Score: 144.436 bits (363), Expect = 1.047e-37
Identity = 95/254 (37.40%), Postives = 138/254 (54.33%), Query Frame = 0
Query:  116 MRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPH-PEAQARVQLKWPNDVLLDDGKVSGLLIEM---DGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEKLATWGKVYDLR-----------DGGAVVPLALETDGRLRVRDLTSGATRLLTAEYL 354
            MRT+L +    +        +AL A +Q +GRGT GR W   +GN++LTVALP   +S     +TLLPL +G ++A+ +  IL     ++ +V +KWPNDVL+ D KVSG LIE    +   S++LVGIGVNVA+ P +  L     R    L +   E     +A  L + IA ++  W   ++ D    ++ +W   A +GK Y+LR           +G  VV + +E DG+LRVRD   G  RLL A+YL
Sbjct:    1 MRTILQNKDEHT-------CVALVATTQTEGRGTQGRVWKAASGNLYLTVALPQVPVS-----LTLLPLHVGIVVAQRVQAILKACHSSEPKVTVKWPNDVLIHDAKVSGCLIEHFTNERNLSWFLVGIGVNVAETPPLQGLPGSHKRLPTSLHEWCPEASAMASA--LGLDIANALADWSHANKND-GQQIVQEWRTWAEFGKTYELRGSVVDEEQGGFEGEVVVTVDIEADGQLRVRD-QQGRERLLVADYL 238          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|219120867|ref|XP_002185665.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582514|gb|ACI65135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 133.265 bits (334), Expect = 2.407e-32
Identity = 95/275 (34.55%), Postives = 146/275 (53.09%), Query Frame = 0
Query:  109 VRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGA--GNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPH-PEAQ---------ARVQLKWPNDVLLDDGKVSGLLIEMDGTS--SYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQED---TADSVIADWEKLATWGKVYDLR-----------DGGAVVPLALETDGRLRVRDLTSGATRLLTAEYLH 355
            V STQD  R +L +  RD+  ++    +A+ A  Q QGRGT GR W GG+  GN++LT+ +P     ++   ITLLPL++  LIA+ + R+L   PE +         A+  +KWPNDVL+++ K++G LIE +     +++L+GIGVNVA AP +      + R A C+           TA  L   +A  +  W   ++ D       VI +W+ L+ +GK Y+LR            G AV  + ++ DG+L VR +  G  RLL A+Y+ 
Sbjct:   69 VGSTQDEARAILHA--RDASDRE--RCIAVIADEQTQGRGTQGRKWEGGSRKGNLYLTIGIP---FDSIRSKITLLPLQIAVLIAQRVKRLLDACPEGEDDGVRRQIGAKTTVKWPNDVLVNEKKLAGTLIENESVDQRTWFLIGIGVNVAFAPGLTESPGKQIREATCIQDFCPSTLPESTALALGTDMARGLVEWALDTETDRFVKETKVIEEWKALSEFGKTYELRGEVVDENSGTYQGEAVTLVDIQDDGQLLVRGV-DGRERLLIADYMF 335          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|1072238256|gb|OEU22983.1| (class II aaRS and biotin synthetase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 111.309 bits (277), Expect = 1.247e-23
Identity = 64/177 (36.16%), Postives = 100/177 (56.50%), Query Frame = 0
Query:  143 QIQGRGTSGRAWMGGAGNMFLTVALPART-----LSALTYPITLLPLRMGTLIAREIVRILPHPEAQAR-----VQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEK 309
            Q  G+GT+GR W+G  GN+F+T+ +P        +     P+TLLPL++G L A  I   L   ++Q++     V +KWPNDVL+D  K+SG LIE   +  ++L+GIG+NVA AP +   G D GR +          +  D ARD+ + +A+    W+  S E+ A+S++  W+ 
Sbjct:  207 QSNGKGTTGRKWLGTPGNVFVTIGIPVNVWMQEMMQNRNIPLTLLPLKIGDLTASLINSTLTKQQSQSKQQPPIVTVKWPNDVLVDGKKISGTLIE--SSDDWFLIGIGINVAYAPPISKTGTDYGRPSQ---------QEIDIARDMGVQLALDFHRWIYDSDEN-AESIVEGWKN 371          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|398020071|ref|XP_003863199.1| (biotin/lipoate protein ligase-like protein [Leishmania donovani] >gi|322501431|emb|CBZ36510.1| biotin/lipoate protein ligase-like protein [Leishmania donovani])

HSP 1 Score: 105.145 bits (261), Expect = 1.213e-22
Identity = 92/275 (33.45%), Postives = 133/275 (48.36%), Query Frame = 0
Query:  101 LHFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALP----ARTLSALTYPITLLPLRMGTLIAREIVRILPHPE-----------AQARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLE-GRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEK-----LATWGKVYDLRDGGAVVPLALETDGRLRVRDLTSGATRLLTAEYL 354
            +HF+   EV ST D  RT+ A++        G  A A+ A  Q  GRGT GR W    GN+++T  +P       L     P+  LPL  G    R ++ +L H +           A   V  KWPND++ +  K+ G LIE DG   Y+++GIG+N+A AP +     D GR A  +     + G    T RDL+ AI       +  S E T +SVI  ++K     L  + ++ D RD   +  ++L + G L+VR  T GA   L+AEYL
Sbjct:    9 IHFL--EEVTSTMDVARTMRATA--------GGKAFAVVAAEQTAGRGTGGRTWTSPKGNLYMTFGVPQLGQPPCLKEELVPV--LPLICGLACRRAVLEVL-HLDRVSAKASVAADAAKAVSTKWPNDIIYNHKKIGGTLIENDG--DYFIIGIGMNIAVAPQM----TDAGREATMINAIAEDFGVKSCTPRDLANAIWCHFFD-ICTSPEWTRESVIESFDKVMDKSLKLYKRLPDGRDPEELTAVSLNSWGHLKVRH-TDGALEDLSAEYL 262          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|154342354|ref|XP_001567125.1| (biotin/lipoate protein ligase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] >gi|134064454|emb|CAM42548.1| biotin/lipoate protein ligase-like protein [Leishmania braziliensis MHOM/BR/75/M2904])

HSP 1 Score: 104.375 bits (259), Expect = 2.606e-22
Identity = 88/268 (32.84%), Postives = 124/268 (46.27%), Query Frame = 0
Query:  105 WVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYP--ITLLPLRMGTLIAREIVRILPHPEAQARVQL----------KWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLE-GRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEK-----LATWGKVYDLRDGGAVVPLALETDGRLRVRDLTSGATRLLTAEYL 354
            ++ EV ST D  RT+  ++        G    AL A  Q  GRGT GR W    GN+++T+ +P +          + +LPL  G    R ++ +L   EA A+  L          KWPND++    K+ G LIE DG   Y+++GIGVNVA  P V     D GR A  +     E G    T +DL+ AI       +  S E T +SVI  ++K     L    ++   RD   +  ++L + G LRVR    G    L AEYL
Sbjct:   11 FLEEVGSTMDVARTMKMTA--------GGQPFALVAAVQTAGRGTCGRTWTSPKGNLYMTLGIPQQGQPPCFKEELVHVLPLICGLACRRAVLEVLHLDEASAKASLAAEASKAVSTKWPNDIIYKHKKIGGSLIEADG--DYFIIGIGVNVAVTPQV----TDAGREATMVNAIAEEFGVKSCTPQDLAKAIWHHFFD-ICTSPEQTRESVIESFDKVMDKSLKLHKRLPGGRDPEELTAVSLNSWGHLRVRH-ADGTMEDLAAEYL 262          
BLAST of EWM24649.1 vs. NCBI_GenBank
Match: gi|731704140|ref|XP_010701487.1| (biotin/lipoate protein ligase-like protein [Leishmania panamensis] >gi|685206456|gb|AIO00687.1| biotin/lipoate protein ligase-like protein [Leishmania panamensis])

HSP 1 Score: 103.99 bits (258), Expect = 3.798e-22
Identity = 88/268 (32.84%), Postives = 124/268 (46.27%), Query Frame = 0
Query:  105 WVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYP--ITLLPLRMGTLIAREIVRILPHPEAQARVQL----------KWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLE-GRGGDTARDLSIAIAVSITTWLGGSQEDTADSVIADWEK-----LATWGKVYDLRDGGAVVPLALETDGRLRVRDLTSGATRLLTAEYL 354
            ++ EV ST D  RT+  ++        G    AL A  Q  GRGT GR W    GN+++T+ +P +          + +LPL  G    R ++ +L   EA A+  L          KWPND++    K+ G LIE DG   Y+++GIGVNVA  P V     D GR A  +     E G    T +DL+ AI       +  S E T +SVI  ++K     L    ++   RD   +  ++L + G LRVR    G    L AEYL
Sbjct:   11 FLEEVGSTMDVARTMKMTA--------GGQPFALVAAVQTAGRGTCGRTWTSPKGNLYMTLGVPQQGQPPCFKEELVPVLPLICGLACRRAVLEVLHLDEASAKASLAAEASKAVSTKWPNDIIYKHKKIGGSLIEADG--DYFIIGIGVNVAVTPQV----TDAGREATMVNAIAEEFGVKSCTPQDLAKAIWHHFFD-ICTSPEQTRESVIESFDKVMDKSLKLHKRLPGGRDPEELTAVSLNSWGHLRVRH-ADGTMEDLAAEYL 262          
The following BLAST results are available for this feature:
BLAST of EWM24649.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106171|gb|EWM24649.1|0.000e+0100.00biotin lipoate protein ligase-like protein [Nannoc... [more]
gi|298708896|emb|CBJ30853.1|4.099e-5239.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|676387557|ref|XP_009037057.1|5.130e-4339.79hypothetical protein AURANDRAFT_64251 [Aureococcus... [more]
gi|1210519482|dbj|GAX21606.1|1.595e-3839.70hypothetical protein FisN_29Hh040 [Fistulifera sol... [more]
gi|1210526346|dbj|GAX14834.1|1.047e-3737.40hypothetical protein FisN_29Lh040 [Fistulifera sol... [more]
gi|219120867|ref|XP_002185665.1|2.407e-3234.55predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072238256|gb|OEU22983.1|1.247e-2336.16class II aaRS and biotin synthetase [Fragilariopsi... [more]
gi|398020071|ref|XP_003863199.1|1.213e-2233.45biotin/lipoate protein ligase-like protein [Leishm... [more]
gi|154342354|ref|XP_001567125.1|2.606e-2232.84biotin/lipoate protein ligase-like protein [Leishm... [more]
gi|731704140|ref|XP_010701487.1|3.798e-2232.84biotin/lipoate protein ligase-like protein [Leishm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6038rna6038Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications