rna5937, rna5937 (mRNA) Nannochloropsis gaditana

Overview
Namerna5937
Unique Namerna5937
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1005
Alignment locationCM002467.1:153135..154761 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100825g1.6630.mrna
Orig protein idgnl|cribi|Naga_100825g1.6630
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:153135..154761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100825g1gene5735Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5937rna5937-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24750.1cds5922Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5937 ID=rna5937|Name=rna5937|organism=Nannochloropsis gaditana|type=mRNA|length=1005bp
CGGCGACTCCCTCCTGGTCGCCCCCGTCCTCCAACCTCATCACCGACGGC
AAACGCTGTACCTCCCTCGCGCCCCCCCCGGGCCAGGACAATGGCACCCG
CCCTTCCTCGGTCCCGCCCTCCCTCCCTCCCTCCCTCACGTGGGTGGATG
TCTCCTCCTCCCTTCAGTACGACGAAGACGACGGACGTTTCCGCCTGGGG
GGAGGCGGGTCTTGGCTGGAGGGTGGCCAGACGCTCTCCGTTCCTGCCCC
TCTCGATACGATCCCGATGTTCGTTGTGGCCGGGACCGTACTGCCCACCC
TCGACCCAACGGTCTCCTCGATGAGCGAGGAGGAGGGAGGGAAAGAGGGG
AGGAGGAGGACGTACGGAGGCATGCGGCACATTTTGCACCTCTGGGCATG
GATGGATGACGAGTGGAGGGCCACCTCGGGAAGCCAGTGGGACGGGGGGA
ACTACCACGTCCGCCCTCTCCTTCCCTCTGCCCCTTCCTCTCCTGGCATC
ACCCTCCTCTGCACCTTCCTCCCCCCGCATCTGCATGATCCCCCCCCCTT
CACGACCTTCATCCTCCAATTGACTCGTCCCAAACCCTCACGGGAAAAGG
GAGGAACGGAGAAGAAGTGGAGTGTGAAGGAGGTGCGGCGCCTGATGTCG
GGAGAGGGGGTAGAGGGAGAAGGTGTAATTGTGGTGAGAAAAGTAGAAGG
GAGCAGGGGTGGAAGTGGGTGGGAGGAGGTTGTTAAGGTGAGGGAGAGAG
GAAGGTTCAGGAAAGATGAAGTGGAGGATTTGTGGACCGAAGACGAGGGA
CAAGGCGTGTTCTGGTTGCGGGTGACGTCGTCCGCCATGGAAAAGGGAGG
GAAGGGAGATGCTGAGGCGGTTAGGGTGCTAGTAATGTTGTACGATGAGG
ATTGGTACGTCGAGGGGGAGAATTCATCGGAAAGCAAGCAATGAAAGTAA
ATTGTATAATATGAAACGCGAAGTACAAGCTAAAAATCGGAGTGAAATTT
TCTGG
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protein sequence of rna5937

>rna5937-protein ID=rna5937-protein|Name=rna5937|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
MLAPSCWTLRSKDTIVTVNSFFFVFSVLFSRRCAHARYSFPSRRPRRDSL
ALALRTDRPSLPPSLPPSLPASLQTLSVPAPLDTIPMFVVAGTVLPTLDP
TVSSMSEEEGGKEGRRRTYGGMRHILHLWAWMDDEWRATSGSQWDGGNYH
VRPLLPSAPSSPGITLLCTFLPPHLHDPPPFTTFILQLTRPKPSREKGGT
EKKWSVKEVRRLMSGEGVEGEGVIVVRKVEGSRGGSGWEEVVKVRERGRF
RKDEVEDLWTEDEGQGVFWLRVTSSAMEKGGKGDAEAVRVLVMLYDEDWY
VEGENSSESKQ
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mRNA from alignment at CM002467.1:153135..154761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5937 ID=rna5937|Name=rna5937|organism=Nannochloropsis gaditana|type=mRNA|length=1627bp|location=Sequence derived from alignment at CM002467.1:153135..154761+ (Nannochloropsis gaditana)
GGCGACTCCCTCCTggtcgcccccgtcctccaaccTCATCACCGACGGCA
AACGCTGtacctccctcgcgccccccccgggccaGGACAATGgcacccgc
ccttcctcggtcccgccctccctccctccctccctcacgtgGGTGgatgt
ctcctcctcccttcagTACGACGAAGACGACGGACGTTTCCgcctggggg
gaggcgggtcTTGGCTGGAGGGTGGCcaggtagagggagggggagaggaa
gaggaagggggggaggaagggaatgaggggggagagagggaggaccgCGT
GGATCGGAcgagagggacagggccTGGTGGGGTTTCTGGTCTCTCTCGGC
CTTTTTGTCCGCTTTGGCTCGGagttttcccccctctttggtgacccccc
ccctcgcctttcctgcctcccttccgcgcCATGCTCGCTCCCTCGTGTTG
GACGTTGCGGTCGAAGGATACGATTGTAACGGTcaactccttcttttttg
ttTTCTCTGTCCTTTTCTCACGACGGTGTGCACACGCGCGgtactccttc
ccttcccgtcgtCCACGTCGTGATTCCCTCGCCCTGGCTCTGCGGACcga
ccgcccctccctccctccctccctccctccctccctccctgcctccctcc
agacgCTCTCCGTTCCTGCCCCTCTCGATACGATCCCGATGTTCGTTGTG
GCCGGGACCGTACTGCCCACCCTCGACCCAACGGTCTCCTCgatgagcga
ggaggagggagggaaagaggggaggaggaggacgtacGGAGGCATGCGGC
ACATTTTGCACCTCTGGGCATGGATGGATGACGAgtggaggtgagggagg
gaggggaggagggaggaagggggaagggaggaagggggggaaggggggga
agtcTGGCCCGGAAAAGGGGGGCGGCGGGTCGGTAcgtgaaggggaaagg
acggagggacagggcggACTGGGTCATTTAGAAAGAGACGCATTATGTGT
GTGGCTTTGATCTCTGAccctaccctcctcctcaccccagGGCCACCTCG
GGAAGCCagtgggacggggggaacTACCAcgtccgccctctccttccctc
tgccccttcctctcctggcatcaccctcctctgcaccttcctccccccgc
atcTGCatgatcccccccccttcacgACCTTCATCCTCCAATTGACTCGT
CCCAAACCCTCacgggaaaagggaggaacggagaaGAAGTGGAGTGTGAA
GGAGGTGCGGCGCCTGATGTCGGGAGAGGGggtagagggagaaggtgtaA
TTGTGGTGAGAAAAGTAGAAGGGAGCAGGGGTGGAagtgggtgggaggag
gttgttaaggtgagggagagaggaaggttCAGGAAAGATGAAGTGGAGGA
TTTGTGGACCGAAGACGAGGGACAAGGCGTGTTCTGGTTGCGGGTGACGT
CGTCCGccatggaaaagggagggaagggagatgcTGAGGCGGTTAGGGTG
CTAGTAATGTTGTACGATGAGGATTGGTACGTCGAGGGGGAGAATTCATC
GGAAAGCAAGCAATGAAAGTAAATTGTATAATATGAAACGCGAAGTACAA
GCTAAAAATCGGAGTGAAATTTTCTGG
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Coding sequence (CDS) from alignment at CM002467.1:153135..154761+

>rna5937 ID=rna5937|Name=rna5937|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002467.1:153135..154761+ (Nannochloropsis gaditana)
ATGCTCGCTCCCTCGTGTTGGACGTTGCGGTCGAAGGATACGATTGTAAC
GGTcaactccttcttttttgttTTCTCTGTCCTTTTCTCACGACGGTGTG
CACACGCGCGgtactccttcccttcccgtcgtCCACGTCGTGATTCCCTC
GCCCTGGCTCTGCGGACcgaccgcccctccctccctccctccctccctcc
ctccctccctgcctccctccagacgCTCTCCGTTCCTGCCCCTCTCGATA
CGATCCCGATGTTCGTTGTGGCCGGGACCGTACTGCCCACCCTCGACCCA
ACGGTCTCCTCgatgagcgaggaggagggagggaaagaggggaggaggag
gacgtacGGAGGCATGCGGCACATTTTGCACCTCTGGGCATGGATGGATG
ACGAgtggagGGCCACCTCGGGAAGCCagtgggacggggggaacTACCAc
gtccgccctctccttccctctgccccttcctctcctggcatcaccctcct
ctgcaccttcctccccccgcatcTGCatgatcccccccccttcacgACCT
TCATCCTCCAATTGACTCGTCCCAAACCCTCacgggaaaagggaggaacg
gagaaGAAGTGGAGTGTGAAGGAGGTGCGGCGCCTGATGTCGGGAGAGGG
ggtagagggagaaggtgtaATTGTGGTGAGAAAAGTAGAAGGGAGCAGGG
GTGGAagtgggtgggaggaggttgttaaggtgagggagagaggaaggttC
AGGAAAGATGAAGTGGAGGATTTGTGGACCGAAGACGAGGGACAAGGCGT
GTTCTGGTTGCGGGTGACGTCGTCCGccatggaaaagggagggaagggag
atgcTGAGGCGGTTAGGGTGCTAGTAATGTTGTACGATGAGGATTGGTAC
GTCGAGGGGGAGAATTCATCGGAAAGCAAGCAATGAATGCTCGCTCCCTC
GTGTTGGACGTTGCGGTCGAAGGATACGATTGTAACGGTcaactccttct
tttttgttTTCTCTGTCCTTTTCTCACGACGGTGTGCACACGCGCGgtac
tccttcccttcccgtcgtCCACGTCGTGATTCCCTCGCCCTGGCTCTGCG
GACcgaccgcccctccctccctccctccctccctccctccctccctgcct
ccctccagacgCTCTCCGTTCCTGCCCCTCTCGATACGATCCCGATGTTC
GTTGTGGCCGGGACCGTACTGCCCACCCTCGACCCAACGGTCTCCTCgat
gagcgaggaggagggagggaaagaggggaggaggaggacgtacGGAGGCA
TGCGGCACATTTTGCACCTCTGGGCATGGATGGATGACGAgtggagGGCC
ACCTCGGGAAGCCagtgggacggggggaacTACCAcgtccgccctctcct
tccctctgccccttcctctcctggcatcaccctcctctgcaccttcctcc
ccccgcatcTGCatgatcccccccccttcacgACCTTCATCCTCCAATTG
ACTCGTCCCAAACCCTCacgggaaaagggaggaacggagaaGAAGTGGAG
TGTGAAGGAGGTGCGGCGCCTGATGTCGGGAGAGGGggtagagggagaag
gtgtaATTGTGGTGAGAAAAGTAGAAGGGAGCAGGGGTGGAagtgggtgg
gaggaggttgttaaggtgagggagagaggaaggttCAGGAAAGATGAAGT
GGAGGATTTGTGGACCGAAGACGAGGGACAAGGCGTGTTCTGGTTGCGGG
TGACGTCGTCCGccatggaaaagggagggaagggagatgcTGAGGCGGTT
AGGGTGCTAGTAATGTTGTACGATGAGGATTGGTACGTCGAGGGGGAGAA
TTCATCGGAAAGCAAGCAATGA
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Synonyms
Publications