rna5913, rna5913 (mRNA) Nannochloropsis gaditana

Overview
Namerna5913
Unique Namerna5913
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length715
Alignment locationCM002467.1:68301..69511 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102058g1.4026.mrna
Orig protein idgnl|cribi|Naga_102058g1.4026
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:68301..69511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102058g1gene5708Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5913rna5913-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24775.1cds5898Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5913 ID=rna5913|Name=rna5913|organism=Nannochloropsis gaditana|type=mRNA|length=715bp
GTCGGTCTGGGACGTGGTCAGGGCCGAGAAGAATGGAAGGTTCCGGAACG
TTCTGTATGCGGGGAGAGGTGCGTCATGGTGGTGAAGGAGATGGAGGGAA
GGAGGGGAAGAGATGAGGAGGGCGGGAGGGAGGAACTGGGTTTCTTGTGG
GGAGATATCTTCATGCTGTCAGCCAGACATATATGACGACTTGATGTCTG
TGCATTGCTCCGCCGCCCTCACTTCCTTCGTCCCATCCTCCTTCCCTCCT
TCCCTCCTTCTCTCCTTCCCTTTTCCTAGACGTCCCCCCCTTCCGGCTGT
ACCCGCGCGTACAGCCCTGGCATCTCTCCCTCTGGCGAGACATGCACTCT
TCCTCCCCCTCCCCTTCCACGTCCTCCTCGCTCCCGCCCTCCCTTCCTGC
CTCCCTCCCTCCTTCGATCCTGCGGGAGAAGCTTCTAGAAGCACGAGTGA
GGGAGTTGGAGAAGAAGATAGCTTCGTGTGGGAAAGAGGCTGAGGAGGGA
AAGTCGACCGATAGGAAATAAGAGAGAGAATGGGAGAAATCGAAGGGAGC
AAGGAAGGAGATTATATTGATATTGATTGCCGAACTGTTCGATCCCTGAG
AAAGATGGGGAGGTTGGGGTAGAAAGTAGGAACGATATAATATGATATGT
ATCGCTAGCTAGGGAGTTGACAAGGAAAAAAGTACCCTGACGAAGGCCGC
CGTCACGATTTTTCC
back to top

protein sequence of rna5913

>rna5913-protein ID=rna5913-protein|Name=rna5913|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
GGREGGREGGRVVMPRDEVVLEAFPCVRMMNRDEGLPQGEREGRGGRGGT
RGGSDGNGGGRGRGVLLLTSHRLLLFPYAPPTSLWMEGDEARMQMETGGS
RDRRRGGRGGGGGGGGRKGGERTMSVPLPWQIPLASIQHLTILPSRFISP
SPSRRPGPWRKAEGKREGGRGERGRGGGGGGGKREDGRKGVKGEREDRLE
VHSNQWSHPIPAPPSSPPSASGPSLPSSFPPPSSLIGSDKEEEDQRPPLA
ILEVSSKEYRRPKCIFFFHSVDLLESMMDLEVREKEREGEEAAGDKKEGV
EDVVR
back to top

mRNA from alignment at CM002467.1:68301..69511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5913 ID=rna5913|Name=rna5913|organism=Nannochloropsis gaditana|type=mRNA|length=1211bp|location=Sequence derived from alignment at CM002467.1:68301..69511- (Nannochloropsis gaditana)
GGAGGGAGGGAAGGAGGGAGGGAAGGAGGGCGGGTCGTGATGCCCCGGGA
TGAGGTGGTCCTGGAAGCCTTTCCGTGTGTGCGCATGATGAACCGGTAGG
TTTGGGGAGGGGAGAGACGAAGGGAGAAAAAGAGGACAAGGGATGGAGAG
GCGGGGAGAGAGAGCGTAAAAGCCCGGGGCTGTGGGATCTCATCGGTGTT
TTACTCTTCTCACAGGGATGAAGGGCTACCGCAAGGAGAAAGGGAGGGAA
GGGGGGGACGAGGAGGGACACGTGGAGGGAGTGATGGAAATGGAGGGGGG
AGGGGACGAGGAGTGCTGCTTTTGACCTCGCACCGTTTACTCCTCTTCCC
GTACGCGCCGCCGACTTCATTATGGATGGAAGGGGACGAAGCGCGCATGC
AGATGGAGACGGGAGGAAGCAGGGACCGGCGAAGGGGAGGAAGGGGAGGA
GGAGGAGGAGGAGGAGGAAGGAAAGGAGGGGAAAGGACGATGAGCGTCCC
TTTGCCGTGGCAGGTAAGCATGGAAGCCTCTTCCTCTCACCGTGCCTTAC
ATGCTCATTATCCTTCCATCCTCATCACCACGATCTGCTTTACAAGTCTT
TCTGTCACGCTATCGCCGAACACCTCCCCATCTTTCCCCCCTCCTCTCCC
TCCCTCCCTCCCTCTCTCCATCCTTCCCTGTCCTCAAAGATCCCGCTAGC
CAGCATTCAGCACCTGACCATCCTTCCTTCCCGCTTCATCAGCCCCTCTC
CTTCGCGGCGACCGGGACCATGGCGGAAGGCGGAAGGAAAGAGGGAAGGA
GGAAGAGGGGAAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGGAAGAGAGA
AGATGGGCGAAAAGGAGTGAAGGGCGAGAGAGAGGACAGGCTGGAGGTAC
ACTCAAACCAATGGAGCCATCCGATTCCTGCTCCTCCATCCTCTCCCCCA
TCCGCTTCCGGCCCCTCCCTCCCGTCCTCCTTTCCCCCTCCTTCCTCCCT
GATCGGGTCGGACAAGGAGGAGGAAGACCAACGGCCACCGTTAGCGATCT
TGGAAGTGTCTAGCAAGGAGTACCGACGCCCCAAATGCATTTTTTTCTTC
CACAGCGTGGACCTCCTTGAATCCATGATGGATTTGGAGGTGAGGGAGAA
GGAAAGGGAGGGGGAGGAGGCAGCGGGAGACAAGAAGGAGGGGGTGGAGG
ATGTGGTGAGG
back to top

Coding sequence (CDS) from alignment at CM002467.1:68301..69511-

>rna5913 ID=rna5913|Name=rna5913|organism=Nannochloropsis gaditana|type=CDS|length=2745bp|location=Sequence derived from alignment at CM002467.1:68301..69511- (Nannochloropsis gaditana)
ATCCCGCTAGCCAGCATTCAGCACCTGACCATCCTTCCTTCCCGCTTCAT
CAGCCCCTCTCCTTCGCGGCGACCGGGACCATGGCGGAAGGCGGAAGGAA
AGAGGGAAGGAGGAAGAGGGGAAAGAGGAAGAGGAGGAGGAGGAGGAGGA
GGGAAGAGAGAAGATGGGCGAAAAGGAGTGAAGGGCGAGAGAGAGGACAG
GCTGGAGGTACACTCAAACCAATGGAGCCATCCGATTCCTGCTCCTCCAT
CCTCTCCCCCATCCGCTTCCGGCCCCTCCCTCCCGTCCTCCTTTCCCCCT
CCTTCCTCCCTGATCGGGTCGGACAAGGAGGAGGAAGACCAACGGCCACC
GTTAGCGATCTTGGAAGTGTCTAGCAAGGAGTACCGACGCCCCAAATGCA
TTTTTTTCTTCCACAGCGTGGACCTCCTTGAATCCATGATGGATTTGGAG
GTGAGGGAGAAGGAAAGGGAGGGGGAGGAGGCAGCGGGAGACAAGAAGGA
GGGGGTGGAGGATGTGGTGAGGGGATGAAGGGCTACCGCAAGGAGAAAGG
GAGGGAAGGGGGGGACGAGGAGGGACACGTGGAGGGAGTGATGGAAATGG
AGGGGGGAGGGGACGAGGAGTGCTGCTTTTGACCTCGCACCGTTTACTCC
TCTTCCCGTACGCGCCGCCGACTTCATTATGGATGGAAGGGGACGAAGCG
CGCATGCAGATGGAGACGGGAGGAAGCAGGGACCGGCGAAGGGGAGGAAG
GGGAGGAGGAGGAGGAGGAGGAGGAAGGAAAGGAGGGGAAAGGACGATGA
GCGTCCCTTTGCCGTGGCAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGG
CGGGTCGTGATGCCCCGGGATGAGGTGGTCCTGGAAGCCTTTCCGTGTGT
GCGCATGATGAACCGATCCCGCTAGCCAGCATTCAGCACCTGACCATCCT
TCCTTCCCGCTTCATCAGCCCCTCTCCTTCGCGGCGACCGGGACCATGGC
GGAAGGCGGAAGGAAAGAGGGAAGGAGGAAGAGGGGAAAGAGGAAGAGGA
GGAGGAGGAGGAGGAGGGAAGAGAGAAGATGGGCGAAAAGGAGTGAAGGG
CGAGAGAGAGGACAGGCTGGAGGTACACTCAAACCAATGGAGCCATCCGA
TTCCTGCTCCTCCATCCTCTCCCCCATCCGCTTCCGGCCCCTCCCTCCCG
TCCTCCTTTCCCCCTCCTTCCTCCCTGATCGGGTCGGACAAGGAGGAGGA
AGACCAACGGCCACCGTTAGCGATCTTGGAAGTGTCTAGCAAGGAGTACC
GACGCCCCAAATGCATTTTTTTCTTCCACAGCGTGGACCTCCTTGAATCC
ATGATGGATTTGGAGGTGAGGGAGAAGGAAAGGGAGGGGGAGGAGGCAGC
GGGAGACAAGAAGGAGGGGGTGGAGGATGTGGTGAGGGGATGAAGGGCTA
CCGCAAGGAGAAAGGGAGGGAAGGGGGGGACGAGGAGGGACACGTGGAGG
GAGTGATGGAAATGGAGGGGGGAGGGGACGAGGAGTGCTGCTTTTGACCT
CGCACCGTTTACTCCTCTTCCCGTACGCGCCGCCGACTTCATTATGGATG
GAAGGGGACGAAGCGCGCATGCAGATGGAGACGGGAGGAAGCAGGGACCG
GCGAAGGGGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGGAAGGAAAGGAG
GGGAAAGGACGATGAGCGTCCCTTTGCCGTGGCAGGGAGGGAGGGAAGGA
GGGAGGGAAGGAGGGCGGGTCGTGATGCCCCGGGATGAGGTGGTCCTGGA
AGCCTTTCCGTGTGTGCGCATGATGAACCGATCCCGCTAGCCAGCATTCA
GCACCTGACCATCCTTCCTTCCCGCTTCATCAGCCCCTCTCCTTCGCGGC
GACCGGGACCATGGCGGAAGGCGGAAGGAAAGAGGGAAGGAGGAAGAGGG
GAAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGGAAGAGAGAAGATGGGCG
AAAAGGAGTGAAGGGCGAGAGAGAGGACAGGCTGGAGGTACACTCAAACC
AATGGAGCCATCCGATTCCTGCTCCTCCATCCTCTCCCCCATCCGCTTCC
GGCCCCTCCCTCCCGTCCTCCTTTCCCCCTCCTTCCTCCCTGATCGGGTC
GGACAAGGAGGAGGAAGACCAACGGCCACCGTTAGCGATCTTGGAAGTGT
CTAGCAAGGAGTACCGACGCCCCAAATGCATTTTTTTCTTCCACAGCGTG
GACCTCCTTGAATCCATGATGGATTTGGAGGTGAGGGAGAAGGAAAGGGA
GGGGGAGGAGGCAGCGGGAGACAAGAAGGAGGGGGTGGAGGATGTGGTGA
GGGGATGAAGGGCTACCGCAAGGAGAAAGGGAGGGAAGGGGGGGACGAGG
AGGGACACGTGGAGGGAGTGATGGAAATGGAGGGGGGAGGGGACGAGGAG
TGCTGCTTTTGACCTCGCACCGTTTACTCCTCTTCCCGTACGCGCCGCCG
ACTTCATTATGGATGGAAGGGGACGAAGCGCGCATGCAGATGGAGACGGG
AGGAAGCAGGGACCGGCGAAGGGGAGGAAGGGGAGGAGGAGGAGGAGGAG
GAGGAAGGAAAGGAGGGGAAAGGACGATGAGCGTCCCTTTGCCGTGGCAG
GGAGGGAGGGAAGGAGGGAGGGAAGGAGGGCGGGTCGTGATGCCCCGGGA
TGAGGTGGTCCTGGAAGCCTTTCCGTGTGTGCGCATGATGAACCG
back to top
Synonyms
Publications