rna5904, rna5904 (mRNA) Nannochloropsis gaditana

Overview
Namerna5904
Unique Namerna5904
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length564
Alignment locationCM002467.1:38334..39888 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101282g1.1426.mrna
Orig protein idgnl|cribi|Naga_101282g1.1426
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:38334..39888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101282g1gene5699Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5904rna5904-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24784.1cds5889Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5904 ID=rna5904|Name=rna5904|organism=Nannochloropsis gaditana|type=mRNA|length=564bp
CCCGCTCCCTCTTCGCCTTCTCAGCGACACACTTAAGGTGACGATGAAAA
CGCACATCCTCTCCACTCAATATGGGAGAGACGAGGAACGTCCCACCCTC
CTCCCTCTGGCGGACAAGATGTTCGGCAAGGCGAGTGCCCCTCCCTCCTT
CCCTCCCTCCCTCCCTTCCTCCATTCTGCTCTAGATTTCTCTGCGTGACT
CCTTTTCGGTCTATGTCCATCCCTCTTCTGTCTCCCGCCTTCCCGCCCTC
CTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCGCCCCCCTTTCC
TCCCTCTTACCCACTCTGTACCCGTTTTTCCCTTCCTGCGCTCAAGCCTC
CATCGATGTCGGTTGGAAAATCACCTCACACACCCCACATCTACCTTCCC
TCCCTCTTTCCCCTCCTTTCCTCCTCCCCTCCCTCCCTTCAGGTGAAGGA
GAAGCTGGGGCTGGACATGGGCCGTTACTGTGCCACCGGGGCGGCGCCCC
TCTCGGCGGATATTCAGGAGTACTTCGCCTCCATCGGCATCACTATCTTC
GAGGTCTTTGGCCA
back to top

protein sequence of rna5904

>rna5904-protein ID=rna5904-protein|Name=rna5904|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MTGGVGGAVPSFLRLCIALSLSGVASDGVLIWADQGRLYKRGDQECVLWQ
TKKWRRIDSSHREGKHLSNQRVYEGLESRSCKRREVEEESTRRSPRGTPG
KMKNNTQETAKQETAGSLFVTSPPPCYTPSSARHFMGNNPSTPSNSTNLG
VDQGNSSHNTPRANPRSPSPRVNKAKDVEDALLVSHGSSSSSRNSSVGSI
DKSNPSADVKGTIMEEKPIFATTTAEEVREKKPGWKRERTQGGDGGGRGR
back to top

mRNA from alignment at CM002467.1:38334..39888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5904 ID=rna5904|Name=rna5904|organism=Nannochloropsis gaditana|type=mRNA|length=1555bp|location=Sequence derived from alignment at CM002467.1:38334..39888- (Nannochloropsis gaditana)
ATGACTGTGTGCGACTCGAAGAGGGGCTGTGGGACCGGGGGGGGGATGGA
CTTGAGGGGGAGGAAGGAAAACGAGGAGCCGGGAGAGGAAGGGAGGGGTT
GGAGGTGCGGTTCCCTCTTTCTTGCGTCTGTGTATTGCTCTCTCATTGTC
TGGTGTGGCATCCGATGGAGTGTTGATTTGGGCTGATCAGGGTAGATTGT
ATAAACGAGGGGATCAGGAGTGTGTCTTGTGGCAAACAAAAAAATGGCGG
AGGTGAATCTTGTACGGTTGAGAGGGATGATGAGCTTGGCTTTTTGTCTG
AAGAATAGACTCTTCTCATAGAGAGGGAAAGCATCTTTCAAACCAGCGTG
TGTACGAAGGACTTGAATCAAGAAGTTGTAAAAGAAGAGAGGTGGAAGAG
GAGTCAACGCGAAGATCCCCCCGCGGGACTCCGGGAAAAATGAAAAAGTT
GGATATCTCGAAATAATTGCGGCATATGCATCAGATCAAGATGTTGCTTT
GGTCTTCGTTATAACTGCGGGATGAACCAATTTCTGACTCCTCCCAATCT
CTTTCCAAAGGAGCAAGACTAGGAGGCCAAAAACCGTGGCGCTGCCTTGG
GAAATGCGTGCACCTGTCCAAACCCGACGCCAGAAAATTCCCAGACGCGT
CCGAAACCACTTCACAGTATGCCTTGCAAACTGTAGCTACAATCATCAGC
ATAGCCAAGCATGATGCCCCATCACCGTTCCATCTTCCAGGAAGTCATTT
GTTGTCGCTCTCGCTTAAATGTGATGATACGACAAGCTAAAGGGATGAGC
AAGGCGATCTGCTCCTGACGGGAGTCGAAAAGCCCCTCATTTTTGATTCG
TGACACAAACATCGGCATTTATTCACTCAACACACTCAATGCTTGACATT
TACCTAGCAAAGAAGTCCTTCGAAATGACAACCTTTTCGGTGAAGGCAAG
ATCCTTTTTTGGCAGTGTTCTCACTGTCGGAGGCACAAGCCCCTCCCTCG
ACGTAGCAAAGATCAGGAAGCCAAAATCATATGTCGTAAAAAAAATTCTC
TTTTTTTCTTCGCTCTCATCCATGCGCAAAAACCGTACGCCACTTATAGT
CTGCCACAGGCAGTAACACGCAGGAGACAGCGAAACAAGAGACTGCAGGC
TCGTTGTTCGTGACGTCCCCTCCTCCGTGCTACACCCCCTCGAGTGCGCG
TCATTTTATGGGCAATAACCCATCCACTCCCTCTAATTCCACCAATTTGG
GCGTGGATCAGGGCAACAGCAGCCACAATACTCCCCGTGCCAATCCACGG
TCACCTTCTCCACGTGTGAATAAGGCCAAAGACGTCGAGGACGCTCTCCT
TGTCTCTCACGGAAGCAGCAGCAGCAGCAGGAATAGCAGCGTTGGCAGCA
TTGACAAGTCGAACCCTTCCGCGGACGTAAAAGGGACAATCATGGAAGAA
AAGCCAATTTTCGCGACGACGACTGCCGAAGAGGTACGGGAAAAGAAGCC
GGGGTGGAAGAGGGAGCGTACTCAGGGAGGGGACGGAGGGGGAAGAGGAA
GGTAA
back to top

Coding sequence (CDS) from alignment at CM002467.1:38334..39888-

>rna5904 ID=rna5904|Name=rna5904|organism=Nannochloropsis gaditana|type=CDS|length=3012bp|location=Sequence derived from alignment at CM002467.1:38334..39888- (Nannochloropsis gaditana)
TAACACGCAGGAGACAGCGAAACAAGAGACTGCAGGCTCGTTGTTCGTGA
CGTCCCCTCCTCCGTGCTACACCCCCTCGAGTGCGCGTCATTTTATGGGC
AATAACCCATCCACTCCCTCTAATTCCACCAATTTGGGCGTGGATCAGGG
CAACAGCAGCCACAATACTCCCCGTGCCAATCCACGGTCACCTTCTCCAC
GTGTGAATAAGGCCAAAGACGTCGAGGACGCTCTCCTTGTCTCTCACGGA
AGCAGCAGCAGCAGCAGGAATAGCAGCGTTGGCAGCATTGACAAGTCGAA
CCCTTCCGCGGACGTAAAAGGGACAATCATGGAAGAAAAGCCAATTTTCG
CGACGACGACTGCCGAAGAGGTACGGGAAAAGAAGCCGGGGTGGAAGAGG
GAGCGTACTCAGGGAGGGGACGGAGGGGGAAGAGGAAGGTAAAATAGACT
CTTCTCATAGAGAGGGAAAGCATCTTTCAAACCAGCGTGTGTACGAAGGA
CTTGAATCAAGAAGTTGTAAAAGAAGAGAGGTGGAAGAGGAGTCAACGCG
AAGATCCCCCCGCGGGACTCCGGGAAAAATGAAAAAGGAGGGGTTGGAGG
TGCGGTTCCCTCTTTCTTGCGTCTGTGTATTGCTCTCTCATTGTCTGGTG
TGGCATCCGATGGAGTGTTGATTTGGGCTGATCAGGGTAGATTGTATAAA
CGAGGGGATCAGGAGTGTGTCTTGTGGCAAACAAAAAAATGGCGGAGATG
ACTTAACACGCAGGAGACAGCGAAACAAGAGACTGCAGGCTCGTTGTTCG
TGACGTCCCCTCCTCCGTGCTACACCCCCTCGAGTGCGCGTCATTTTATG
GGCAATAACCCATCCACTCCCTCTAATTCCACCAATTTGGGCGTGGATCA
GGGCAACAGCAGCCACAATACTCCCCGTGCCAATCCACGGTCACCTTCTC
CACGTGTGAATAAGGCCAAAGACGTCGAGGACGCTCTCCTTGTCTCTCAC
GGAAGCAGCAGCAGCAGCAGGAATAGCAGCGTTGGCAGCATTGACAAGTC
GAACCCTTCCGCGGACGTAAAAGGGACAATCATGGAAGAAAAGCCAATTT
TCGCGACGACGACTGCCGAAGAGGTACGGGAAAAGAAGCCGGGGTGGAAG
AGGGAGCGTACTCAGGGAGGGGACGGAGGGGGAAGAGGAAGGTAAAATAG
ACTCTTCTCATAGAGAGGGAAAGCATCTTTCAAACCAGCGTGTGTACGAA
GGACTTGAATCAAGAAGTTGTAAAAGAAGAGAGGTGGAAGAGGAGTCAAC
GCGAAGATCCCCCCGCGGGACTCCGGGAAAAATGAAAAAGGAGGGGTTGG
AGGTGCGGTTCCCTCTTTCTTGCGTCTGTGTATTGCTCTCTCATTGTCTG
GTGTGGCATCCGATGGAGTGTTGATTTGGGCTGATCAGGGTAGATTGTAT
AAACGAGGGGATCAGGAGTGTGTCTTGTGGCAAACAAAAAAATGGCGGAG
ATGACTTAACACGCAGGAGACAGCGAAACAAGAGACTGCAGGCTCGTTGT
TCGTGACGTCCCCTCCTCCGTGCTACACCCCCTCGAGTGCGCGTCATTTT
ATGGGCAATAACCCATCCACTCCCTCTAATTCCACCAATTTGGGCGTGGA
TCAGGGCAACAGCAGCCACAATACTCCCCGTGCCAATCCACGGTCACCTT
CTCCACGTGTGAATAAGGCCAAAGACGTCGAGGACGCTCTCCTTGTCTCT
CACGGAAGCAGCAGCAGCAGCAGGAATAGCAGCGTTGGCAGCATTGACAA
GTCGAACCCTTCCGCGGACGTAAAAGGGACAATCATGGAAGAAAAGCCAA
TTTTCGCGACGACGACTGCCGAAGAGGTACGGGAAAAGAAGCCGGGGTGG
AAGAGGGAGCGTACTCAGGGAGGGGACGGAGGGGGAAGAGGAAGGTAAAA
TAGACTCTTCTCATAGAGAGGGAAAGCATCTTTCAAACCAGCGTGTGTAC
GAAGGACTTGAATCAAGAAGTTGTAAAAGAAGAGAGGTGGAAGAGGAGTC
AACGCGAAGATCCCCCCGCGGGACTCCGGGAAAAATGAAAAAGGAGGGGT
TGGAGGTGCGGTTCCCTCTTTCTTGCGTCTGTGTATTGCTCTCTCATTGT
CTGGTGTGGCATCCGATGGAGTGTTGATTTGGGCTGATCAGGGTAGATTG
TATAAACGAGGGGATCAGGAGTGTGTCTTGTGGCAAACAAAAAAATGGCG
GAGATGACTTAACACGCAGGAGACAGCGAAACAAGAGACTGCAGGCTCGT
TGTTCGTGACGTCCCCTCCTCCGTGCTACACCCCCTCGAGTGCGCGTCAT
TTTATGGGCAATAACCCATCCACTCCCTCTAATTCCACCAATTTGGGCGT
GGATCAGGGCAACAGCAGCCACAATACTCCCCGTGCCAATCCACGGTCAC
CTTCTCCACGTGTGAATAAGGCCAAAGACGTCGAGGACGCTCTCCTTGTC
TCTCACGGAAGCAGCAGCAGCAGCAGGAATAGCAGCGTTGGCAGCATTGA
CAAGTCGAACCCTTCCGCGGACGTAAAAGGGACAATCATGGAAGAAAAGC
CAATTTTCGCGACGACGACTGCCGAAGAGGTACGGGAAAAGAAGCCGGGG
TGGAAGAGGGAGCGTACTCAGGGAGGGGACGGAGGGGGAAGAGGAAGGTA
AAATAGACTCTTCTCATAGAGAGGGAAAGCATCTTTCAAACCAGCGTGTG
TACGAAGGACTTGAATCAAGAAGTTGTAAAAGAAGAGAGGTGGAAGAGGA
GTCAACGCGAAGATCCCCCCGCGGGACTCCGGGAAAAATGAAAAAGGAGG
GGTTGGAGGTGCGGTTCCCTCTTTCTTGCGTCTGTGTATTGCTCTCTCAT
TGTCTGGTGTGGCATCCGATGGAGTGTTGATTTGGGCTGATCAGGGTAGA
TTGTATAAACGAGGGGATCAGGAGTGTGTCTTGTGGCAAACAAAAAAATG
GCGGAGATGACT
back to top
Synonyms
Publications