rna5903, rna5903 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5903
Unique Name	rna5903
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1432
Alignment location	CM002467.1:36919..37798 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102211g1.1299.mrna
Orig protein id	gnl\|cribi\|Naga_102211g1.1299
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:36919..37798 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102211g1	gene5698	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24785.1	cds5888	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5903	rna5903-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:36919..37798-
coding sequence from alignment at CM002467.1:36919..37798-

mRNA sequence

>rna5903 ID=rna5903|Name=rna5903|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp
ATAGGCGGCCAACAGCCAGGCCACCAGTCGGGCCCAATACGTGCAGAAGT
ACACCCTGCTCGAGAAGGACTTCAGCGAGAAGGAGGGCGACCTGACGCCG
ACGCTGAAGCTGAAGAGGAGCGTGGTAGCCAAGAAGCATGCGGCCTTGAT
CGAGTCCCTGTACGCGTGAGGGGGGAAGGGACGGAGGAAGGGAGGGAGAG
TCTGGGGAGAGGATGTTGAAGCGCGGCCAAGGGAGAGAGGATAACAGCCT
TGGGAGGAGAGGGGCACGGAGTGCGCGTTGTCGCCTGAGTTTTAAATCCT
TTGGGTGTGAGAGCACGGCGTCAGGGAAGCTGTCGATGTTTCAAGATATG
ATACAATGAGCAGTGGAAGTAGAAGCAGAGAGGGCGACGCGCGCATGGCC
GGTGTGTATATAGAGGAGCGTTCGTGTGAGTGATAGTGCGTGTCTGTATG
TGTACGTGTCTTTTTTTATTGGAGAGTCAGAGAAATTTTCCGCCTGTGGA
CCGAAGAGCGGGCAGCTGGGCCGGTATAGAGCCCAAGTCCTTGCTTTGTG
GTGAGGGGAGGACTAGGCGAGGGAGGGAGGAAGAGAGGAAGGGAGAGAGG
GAGGGAAGGAGAGACAGAGGCTGGGGCAGGAGGGGTAGGGGAGTGTGGGG
ACCATGGCGTCAATGTCCGGGTAAGTGCGTCCTACTCTTGATGGTCGCTT
GCTTCGGCTTGGGCCCTGACGCCCGCGGCGGGGGCAGGGTAAGCTTGCTT
GTGGCAGCTCCGGCTGTCTGCTCGCCACGCCCGGCCCGTGCAATGCCTTT
CCGATACAGATAGAAACGCGTGAGGTGGTGGAACGGCCTTTTGATCCTGT
CGCATCTGAGAGATTTTATGTCAAACATGGTCATTTATCCGGCGATAGCT
GTGATGGTGTCCAGGCGGAGAGGGACGGTGGAGGTGCCTGAAGAAAGACA
TGTCACGACTAACGCGGTTGCCGCATGGCTCCGTGCCAGATAGGTTCGCT
GCACACATAAAGGCTTTCGCTGGGTGGGGTGTATTGATAGTGCTTGATTT
GGCTTGTGGGGTATGCTTATCGTCTGAACTTTCCTGTCCCTCCTTCCTCC
CTTGTCCCCTTCGGAACCTCCCACCAGCCGCCAGTGGGGCGTATCGTGTT
ACATTGCTTTTGAGAAACCGCTAATCCAGCACAATCCTCTCGGGATCACC
CTTTTACCCTAATCCCTTCCGCCCGTCGTGCCGCTTCCCGCGACGAAAAA
TCCAACGGAGCTCGCGTCAATGCTTTTCTTCCCCTCTCTTTGCTCTTTTC
TGGAAACCAAATCCCTCTCCGTCACGCCCGTGGATCCAGCTCCCTTCGTA
CGAGACCCTCGATTTCTGATTGACTCACTTACTTTCATTCAAAGACGCTT
ATTCACATCGCCAATACATTTCCAGGGCCACC

protein sequence of rna5903

>rna5903-protein ID=rna5903-protein|Name=rna5903|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MGETRNVPPSSLWRTRCSARRVPLPPSLPPSLPPFCSRFLCVTPFRSMSI
PLLSPAFPPSFPPSLPPSLPPSRPPFLPLTHSVPVFPFLRSSLHRCRLEN
HLTHPTSTFPPSFPSFPPPLPPFR

mRNA from alignment at CM002467.1:36919..37798-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5903 ID=rna5903|Name=rna5903|organism=Nannochloropsis gaditana|type=mRNA|length=880bp|location=Sequence derived from alignment at CM002467.1:36919..37798- (Nannochloropsis gaditana)
CCCGCTCCCTCTTCGCCTTCTCAGCGACACACTTAAGGTGACGATGAAAA
CGCACATCCTCTCCACTCAATATGGGAGAGACGAGGAACGTCCCACCCTC
CTCCCTCTGGCGGACAAGATGTTCGGCAAGGCGAGTGCCCCTCCCTCCTT
CCCTCCCTCCCTCCCTTCCTCCATTCTGCTCTAGATTTCTCTGCGTGACT
CCTTTTCGGTCTATGTCCATCCCTCTTCTGTCTCCCGCCTTCCCGCCCTC
CTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCGCCCCCCTTTCC
TCCCTCTTACCCACTCTGTACCCGTTTTTCCCTTCCTGCGCTCAAGCCTC
CATCGATGTCGGTTGGAAAATCACCTCACACACCCCACATCTACCTTCCC
TCCCTCTTTCCCCTCCTTTCCTCCTCCCCTCCCTCCCTTCAGGTGAAGGA
GAAGCTGGGGCTGGACATGGGCCGTTACTGTGCCACCGGGGCGGCGCCCC
TCTCGGCGGATATTCAGGTAAGGATCGTGTGGCAGCCTGCACGAATAGGA
GCACTCGAGGCACCATGCATGGGGGTGGCGATGGACTTTACTCGCTGCGT
GCGTGTGTCTGTGTCGATGACCGTCTCTCCGGCTTGCTCGGTGGTGGACC
GCGTGTGGAACATGATACCCGGATTTCGCCCCAGTGAATCCCCTCGCACA
GCCATAGAGCGCCCTGTCGTCTCATTATCATGCGGCAGAGAGGGAGAGGG
AGGAGATGGCGATAGTTGGCGTAGCTATCTGTCAGCGGCCACGCGCGGCA
CTGACCCTGTGACTCGGTTTTTCCCCTCCACAGGAGTACTTCGCCTCCAT
CGGCATCACTATCTTCGAGGTCTTTGGCCA

Coding sequence (CDS) from alignment at CM002467.1:36919..37798-

>rna5903 ID=rna5903|Name=rna5903|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002467.1:36919..37798- (Nannochloropsis gaditana)
ATGGGAGAGACGAGGAACGTCCCACCCTCCTCCCTCTGGCGGACAAGATG
TTCGGCAAGGCGAGTGCCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCCTC
CATTCTGCTCTAGATTTCTCTGCGTGACTCCTTTTCGGTCTATGTCCATC
CCTCTTCTGTCTCCCGCCTTCCCGCCCTCCTTCCCTCCTTCCCTCCCTCC
CTCCCTCCCTCCTTCCCGCCCCCCTTTCCTCCCTCTTACCCACTCTGTAC
CCGTTTTTCCCTTCCTGCGCTCAAGCCTCCATCGATGTCGGTTGGAAAAT
CACCTCACACACCCCACATCTACCTTCCCTCCCTCTTTCCCCTCCTTTCC
TCCTCCCCTCCCTCCCTTCAGGTGA

Synonyms

Publications