rna5820, rna5820 (mRNA) Nannochloropsis gaditana

Overview
Namerna5820
Unique Namerna5820
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1494
Alignment locationCM002466.1:923226..924788 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100709g2.2284.mrna
Orig protein idgnl|cribi|Naga_100709g2.2284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:923226..924788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100709g2gene5620Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5820rna5820-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24869.1cds5805Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5820 ID=rna5820|Name=rna5820|organism=Nannochloropsis gaditana|type=mRNA|length=1494bp
TCCTGCTTTCCGACCACCCACCATGGCCGCCACCATTTCCTCTCCTTACA
CATCCCATTCCCCAATCTTGCTCCTTAGCACCCACACCAAAATAGTGATA
GCAATCGCATGGGTCGACTGGATAGTGCCCGTAAGGGCAATATTGCTCGG
AAGCGTCGCCTTCAGGCGGTGGCGGAGGAATTTGAGGCAGACCGGGCTCT
GCAAGTTGAGGAGTCTCTGGACGCAGCGAAGCCGGACGAGGATCTATTTT
TCGTAGACACCAGCGCTGATACCACTTTACCACCCACGCGAAGCAAGGCT
GAAAAGCGTCGGCGCTTCTTTAGTGAGAAAGTGAGCTCTGTGGCAATGCC
CTCTGAGCATCTAGTCAAAGCAGTACAGCGTATCGTCAAAAGTCAACAGA
AAGAGAAAAAGGCCAAACCGGACGATGATGGAGCAGGGAAAACCAGTATT
CATCGACAGTCGAAAGGAAAGGTCGAGCAACAGGGTCTTTACGATATGTG
GGATGCAGGAAAGGGAAGCACAGGAGGGAAGGGCAAAAGCAAGAAGGGAA
AGAAATGTGAAGCCCCCCCCGTCCCTAAATCCAAAAAGCGGCCATTGAAA
CCGCCTCTTGCCTCTACATTGTCACTGATCGAGCGGCCGCTAGGAGGACA
GTCATACAATCCTCTAGCAGAGGACCATCAGCAGGCATTGGTGGCTGCGG
TGTCGGTGGAGGAAAAGCGGAAAAAAGCGTTGGAAAAACTGAAAGCACCG
CTCAGTGTCATGAGTGAGGAAACGAAGGCGCTGATATTGAGCGATTCTGA
GAGCGATGCAGAGGAAGAGGGGGCATTGGAGGAAAGGAGCGACGGGGATG
CAGGCGTGGCGACGAAGCGGATGTTGAGAAGGAAGGGGAAACAGACCAAG
GCGGAGAGGAACAAACAACGGCGCCGAAAGATCCAGGAGCACGAAGCCGC
GCTAGAAAGAGAACGGAAGCACCTGCTGCAAGAAGCTTCCAGGGCGCAAG
AATACGCCAAGGCCCTTCGTCGACGAGAAGCCGAAGCAGGAGGCGCGAAG
AGGAAACGGCAGACGGATGACCAGAACGTCCCGAAAAACCACCGAAGCCA
GCACTTTGTTCCCCGAGATCTACCCCGGGAGAAAGTGTTACTACCCATGG
ATAAAAATCCCATGCAGGCCCCGTCTTTTCCTGTTCCTCTTTCCGATGAA
TTGGGGGGCAGCCTGCGGACCGTGCGGACGAAAGGCAATTTGGCGTCCGA
GACCCTGGTGTCTTTGCAAAGAAGGGGACAGTACGAGGTCGTGCCGCAAC
GAAAGAGCGCTCGACCAAAGCCGCGGGTTAAATTTGTGGAAAAAATAAGG
GGAGAATAGCCGCAGGGAAGGATTCAAGGGATGTGTGGAGAAAAATAGGG
TAGAAAAGACGATTGTTCGAAGAGGTAATCTGTTAGCGAGGAAGGGAACC
AAAAAAAAGAGCAAAGCATTCATGGCCAGCTTCCACGCGCAATA
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protein sequence of rna5820

>rna5820-protein ID=rna5820-protein|Name=rna5820|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MLRHARPELDVLAHSRGSPSHPGGYDLRIKILNLEKNPSMPPTPPGPASR
PSEPVEKMEEAGAEGGKEGGGIGGSGDSQAGERPDRTGKEAGSSPSSQSS
MTKQAPSALASFSSRFRLPSGNRPARPFPSSPLDKPGDPPSLPPSLGTTT
LTSSLFEGKGFVDVMRSLSGLPRLSMAASGTATSSPPASSHVPPPPPPPP
PPPPTPTSPVGPRTPSLPPPLAATVSSTGSSYLKGEDRDKEVEWGEWGGP
GPFQSPGFLLPPSFLPLINAFEPGVGARRSTKSGASTVGDSYFCSPFGTP
YFVPPPSSPSSSPGSCPAHRAPASSVLASPPISIGRSGSLSSSKGRRLLA
HSIEERLVALQQKERKLEKADK
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mRNA from alignment at CM002466.1:923226..924788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5820 ID=rna5820|Name=rna5820|organism=Nannochloropsis gaditana|type=mRNA|length=1563bp|location=Sequence derived from alignment at CM002466.1:923226..924788- (Nannochloropsis gaditana)
CCTCCAGCTACCTGATCCAGGACAAGGTGGCTTCTCTTCCCGCCGGGTGC
ACCCCCGGAGTCCAATTGCTGGGCCTTCGGCCCGAAATCAAGGACGGCTT
TGTCGTCCTCCTCCTACCCATGCTCCGCCACGCGCGGCCGGAGCTAGACG
TTTTGGTAAGGGCAGGAGGGAGGGCGGAATGGAGGGCAGGAGGGAGGGCG
GGAGGGAAGGGAGGGGCACGTGCGCGCGTGCTAGAGGTGGCATTGACCTG
ACTTGCGCCCTCCTCTTGTCTTTACGAAGGCCCTCCTTCCTTGACTACCG
GAACCCTGAGACGGAATTCATGGGCCCTTTCCCTCTCTCCCTGTCGAGTG
CTCCCATGCCTCTGGGACACTGTCTGTCGCCCTTCCCTCGCTTACCTTCT
CTTCCCCTCCTGTACCCCCTTTCCTCCACCCAAAACACAGGCGCACAGTC
GCGGCAGTCCTTCCCATCCTGGAGGCTACGACCTCCGCATCAAAATTCTA
AATTTGGAAAAAAACCCGAGTATGCCTCCGACTCCACCGGGTCCTGCGTC
CAGGCCGTCGGAGCCTGTGGAGAAAATGGAAGAGGCGGGGGCGGAGGGCG
GGAAGGAGGGCGGGGGCATCGGAGGAAGCGGAGACAGCCAAGCCGGGGAG
CGCCCGGATAGAACGGGCAAGGAGGCTGGGTCTTCGCCATCGTCCCAATC
CTCCATGACAAAGCAAGCCCCCTCCGCCCTTGCCTCGTTCTCCTCCCGGT
TCCGCCTCCCCTCCGGCAACCGCCCGGCTCGGCCTTTCCCTTCTTCGCCT
CTGGACAAGCCTGGGGACCCTCCCTCCCTCCCTCCCTCCCTCGGCACCAC
CACCCTGACCTCCTCCCTCTTCGAGGGCAAAGGCTTCGTCGATGTCATGC
GCAGCCTGAGCGGGCTCCCGAGGCTTTCCATGGCCGCCTCCGGCACGGCA
ACGTCCTCCCCGCCCGCCTCTTCACACGTCCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCACCGCCCACGCCTACCAGCCCGGTAGGGCCTCGTACACCCT
CCCTCCCTCCACCTCTTGCGGCGACCGTCTCCTCCACCGGGAGCAGTTAC
CTTAAGGGGGAGGATCGGGACAAGGAAGTCGAGTGGGGGGAATGGGGGGG
GCCTGGGCCCTTCCAAAGCCCTGGCTTTCTCCTTCCACCGTCCTTCCTCC
CCCTCATCAATGCATTCGAGCCCGGCGTCGGTGCGAGAAGAAGCACAAAA
TCAGGTGCCTCGACCGTGGGGGACAGCTACTTCTGCTCTCCCTTTGGCAC
CCCCTACTTCGTCCCCCCCCCGTCCTCCCCCTCCTCCTCTCCCGGGTCTT
GTCCGGCACACCGGGCTCCTGCCTCGAGTGTTCTAGCCTCCCCACCCATC
TCGATTGGAAGGAGTGGCAGTCTAAGCAGCAGTAAGGGTCGAAGGCTGTT
GGCCCATTCGATAGAAGAGCGTTTGGTGGCCTTGCAGCAAAAAGAGAGAA
AATTGGAAAAGGCAGACAAATAGTAGCCATTGCGTGCAAAAGAACAAATC
AACCGCTGTAACA
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Coding sequence (CDS) from alignment at CM002466.1:923226..924788-

>rna5820 ID=rna5820|Name=rna5820|organism=Nannochloropsis gaditana|type=CDS|length=2238bp|location=Sequence derived from alignment at CM002466.1:923226..924788- (Nannochloropsis gaditana)
GCGCACAGTCGCGGCAGTCCTTCCCATCCTGGAGGCTACGACCTCCGCAT
CAAAATTCTAAATTTGGAAAAAAACCCGAGTATGCCTCCGACTCCACCGG
GTCCTGCGTCCAGGCCGTCGGAGCCTGTGGAGAAAATGGAAGAGGCGGGG
GCGGAGGGCGGGAAGGAGGGCGGGGGCATCGGAGGAAGCGGAGACAGCCA
AGCCGGGGAGCGCCCGGATAGAACGGGCAAGGAGGCTGGGTCTTCGCCAT
CGTCCCAATCCTCCATGACAAAGCAAGCCCCCTCCGCCCTTGCCTCGTTC
TCCTCCCGGTTCCGCCTCCCCTCCGGCAACCGCCCGGCTCGGCCTTTCCC
TTCTTCGCCTCTGGACAAGCCTGGGGACCCTCCCTCCCTCCCTCCCTCCC
TCGGCACCACCACCCTGACCTCCTCCCTCTTCGAGGGCAAAGGCTTCGTC
GATGTCATGCGCAGCCTGAGCGGGCTCCCGAGGCTTTCCATGGCCGCCTC
CGGCACGGCAACGTCCTCCCCGCCCGCCTCTTCACACGTCCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCACCGCCCACGCCTACCAGCCCGGTAGGGCCT
CGTACACCCTCCCTCCCTCCACCTCTTGCGGCGACCGTCTCCTCCACCGG
GAGCAGTTACCTTAAGGGGGAGGATCGGGACAAGGAAGTCGAGTGGGGGG
AATGGGGGGGGCCTGGGCCCTTCCAAAGCCCTGGCTTTCTCCTTCCACCG
TCCTTCCTCCCCCTCATCAATGCATTCGAGCCCGGCGTCGGTGCGAGAAG
AAGCACAAAATCAGGTGCCTCGACCGTGGGGGACAGCTACTTCTGCTCTC
CCTTTGGCACCCCCTACTTCGTCCCCCCCCCGTCCTCCCCCTCCTCCTCT
CCCGGGTCTTGTCCGGCACACCGGGCTCCTGCCTCGAGTGTTCTAGCCTC
CCCACCCATCTCGATTGGAAGGAGTGGCAGTCTAAGCAGCAGTAAGGGTC
GAAGGCTGTTGGCCCATTCGATAGAAGAGCGTTTGGTGGCCTTGCAGCAA
AAAGAGAGAAAATTGGAAAAGGCAGACAAATAGATGCTCCGCCACGCGCG
GCCGGAGCTAGACGTTTTGGCGCACAGTCGCGGCAGTCCTTCCCATCCTG
GAGGCTACGACCTCCGCATCAAAATTCTAAATTTGGAAAAAAACCCGAGT
ATGCCTCCGACTCCACCGGGTCCTGCGTCCAGGCCGTCGGAGCCTGTGGA
GAAAATGGAAGAGGCGGGGGCGGAGGGCGGGAAGGAGGGCGGGGGCATCG
GAGGAAGCGGAGACAGCCAAGCCGGGGAGCGCCCGGATAGAACGGGCAAG
GAGGCTGGGTCTTCGCCATCGTCCCAATCCTCCATGACAAAGCAAGCCCC
CTCCGCCCTTGCCTCGTTCTCCTCCCGGTTCCGCCTCCCCTCCGGCAACC
GCCCGGCTCGGCCTTTCCCTTCTTCGCCTCTGGACAAGCCTGGGGACCCT
CCCTCCCTCCCTCCCTCCCTCGGCACCACCACCCTGACCTCCTCCCTCTT
CGAGGGCAAAGGCTTCGTCGATGTCATGCGCAGCCTGAGCGGGCTCCCGA
GGCTTTCCATGGCCGCCTCCGGCACGGCAACGTCCTCCCCGCCCGCCTCT
TCACACGTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCCACGCC
TACCAGCCCGGTAGGGCCTCGTACACCCTCCCTCCCTCCACCTCTTGCGG
CGACCGTCTCCTCCACCGGGAGCAGTTACCTTAAGGGGGAGGATCGGGAC
AAGGAAGTCGAGTGGGGGGAATGGGGGGGGCCTGGGCCCTTCCAAAGCCC
TGGCTTTCTCCTTCCACCGTCCTTCCTCCCCCTCATCAATGCATTCGAGC
CCGGCGTCGGTGCGAGAAGAAGCACAAAATCAGGTGCCTCGACCGTGGGG
GACAGCTACTTCTGCTCTCCCTTTGGCACCCCCTACTTCGTCCCCCCCCC
GTCCTCCCCCTCCTCCTCTCCCGGGTCTTGTCCGGCACACCGGGCTCCTG
CCTCGAGTGTTCTAGCCTCCCCACCCATCTCGATTGGAAGGAGTGGCAGT
CTAAGCAGCAGTAAGGGTCGAAGGCTGTTGGCCCATTCGATAGAAGAGCG
TTTGGTGGCCTTGCAGCAAAAAGAGAGAAAATTGGAAAAGGCAGACAAAT
AGATGCTCCGCCACGCGCGGCCGGAGCTAGACGTTTTG
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Synonyms
Publications