rna5774, rna5774 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5774
Unique Name	rna5774
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1056
Alignment location	CM002466.1:812879..815607 +

Link to JBrowse

Properties


Property Name	Value
Product	anthranilate phosphoribosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100092g13.2142.mrna
Orig protein id	gnl\|cribi\|Naga_100092g13.2142
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:812879..815607 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100092g13	gene5578	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5774	rna5774-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24919.1	cds5759	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:812879..815607+
coding sequence from alignment at CM002466.1:812879..815607+

mRNA sequence

>rna5774 ID=rna5774|Name=rna5774|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp
ATGGTGAAAATGTCAAGAAAGAGACCACTTTTTTCGCCTCTGCGCGCACT
TTTCTCTGTAGCTGTACCATACTTAGCCTCTGCATTGCTTTTCTTCGGCT
TGAAAGGCGTGAGAGTTGTCGCGTTGAGGAAATCAGAATTATCCAGCGTA
GGCAGAACGGGCTTCTTAGTGTATGGCGGATCCCATCCTCGGCGCTACCA
ACACAGCGCCTTTGTCCACCAAAATAATCATCATTACCATGAATTCAAGG
AGCCTATCGATGAAGTACGGATATTGCCACGAAATGTGGAGGTTCCAAAG
CACGTAGCTTTCATCTTGGACGGCAATGGACGGTGGGCTGAAAAACAAGG
ATTACCACGCGGTGCTGGCCACAGAGAAGGTGCCAAACGAGCTCTCGAGG
TCCTCCAGAGTTGTCAGGCTTTAGGAATTAGAACTGTAACACTCTATTGT
CTGAGCACGGAAAACTGGAGCCGGCCCGCGGCTGAGATCTCCGTCATCCT
GGCTTGCGTGGAGACGACGCTGCGGACCAATCTGCAATACGCGCACGACA
ATCGCATCCGCCTTGTCGTCATCGGGCAGAGTCATCGGCTTCCTCCTAAT
TTGCAGGCTTTGGTGTCACAGGCCGAGAGGGAGACGGCCCTCTATACGGA
AGGGATGACCGTCTGCCTGGCCCTTAGCTATGGAGGAAGGGATGATATCG
TGCAGGCCTCTCGCACACTGGCAGAGCAAGCAGCAATGGGAGAGATACAG
CCACAGGACATTGATGAAGCCCTCTTCGAATCCTGCCTGTCTACGGGCGT
GAAGGGAGTTGACGGAGCCCCCGACCTGGTCATCCGTACCTCCGGGGAGC
AACGATGGAGCAATTTCATGCTTTTTGAGTGTGCGTATTCCGAATTTTAT
GTCGCAGACGTCCTATGGCCCGACTTCCAGGAGCCGGATTTATTGGCTGC
CTTGGAGAGTTACGGGATGCGACGCCGTCGGTTTGGCGGCGTGAGAGAGA
AGAGATCGGCATTGGAAACAGAGCAGGTGGTTGGGGCGCGTAGAGGGGAC
ATGTAA

protein sequence of rna5774

>rna5774-protein ID=rna5774-protein|Name=rna5774|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MLGKPDTYVVIRYGGDEHRTKEVEDCEDPVYDDMWVSTAGMARNDMVEIT
VMEKYNVKDEELGSLTFPADSFAHNVLEASWFELERDGEVCGEICLAARF
APILTSGLGGAGNRSGHGAVSGDGPLEQVAQYFSGPRPWYMRGGFYYDLS
KRVYRRVKHLPMLGLGPAVGECVVERVLSRVISVPAAGDAPLVSNLSRLD
HVVAGLISTIDMGIDQTKDQMLQSALSLKKKMTGKAPSGGALEDREGREP
ASAAKKNSGIIWSLVEGTVTHVAKPVASYVPIVGGLGVRVLDFIVPPPPA
AETASVVESLAPAACVGEKSTSPLARKGGYTSAFDAPSKVNAASASGY

mRNA from alignment at CM002466.1:812879..815607+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5774 ID=rna5774|Name=rna5774|organism=Nannochloropsis gaditana|type=mRNA|length=2729bp|location=Sequence derived from alignment at CM002466.1:812879..815607+ (Nannochloropsis gaditana)
TTTGTTCAAGGTTGATTGCAAACACGCCATTTCTGCCCCCAAAAAGCTCG
AAATGAAGCTGAAGATAGCCCCTGATTTGCTATGGGTTCAAATAAAGCTT
ATTACAAATGGATAGAATTGTACTGCGCCTCATCAAACGACGGCACGAGG
TATGTACAGGAGTCTTGAGCGGCTTTCGACGGCAAGCATGCACCGGTCTT
GTATGTTAGCATTCGTGCACCTGCTCTCTCCATTCGATCCATTCGCGCAT
CGTGTAGCGCGTTGCAGAAGACTGATATGGCCGGGGAGGTTGACGGTTGA
TGAGCCGTTACTTGTTCTTCTTCAACGGCCGGGAAACGTCTGAGCCTCCG
CGCCCATATTTCGTCTCGCTTCCCCTCTTGCTGCGCATTGAACCCCTCGC
TGGCGTCCTCCATGGTTGAAATGAGTCGTTTGGATGACGTAAATAATCTT
TCTAAACGTTGTTATTATGTACGAAAGGCGCAGTTGTTAACGGTGAGGTG
GCTTCCCAATTCGTCTTATGATTCAAAGTGATTGCCCGTCTAGTTCGCAT
CATCGCTGACACTGGGGCGCTCAAAATGTTAACAGGCACTTGGCACAGGA
TGCCAATGGACCATGTTCAGGAGAAAGTCACCGACTTATCGATTGTTACG
AGCGGGACAGCTAAAATGGACCGCGGTATCATTCATCCTGGCGTCGTGAA
CATTCAAGGTAAGGACAGCACAGATGGCGCGGGGTTGGCAATCTTAATCC
CTACCGGTGCATAAATGAGATGAGCAACGATCAAGGTTATCGTTGTAAAT
TCATGAGGCAGTATACTGAAATGACCATGAAAGTGCGGAGTCTTAGTGTA
CGACGCGTGAGGTAGATATTACCCAGAATGACAGGATATCGTTCGTCATC
TTTTGGCGACTTCGCTCTGTACAGATTGTGCGATTGTCACCCTTTTCACC
CTTTCATGCAAATTGCCCGATTTCTTGAACCTCACAGTGCTAGCTGCAAA
AGGCATCCAGTCATTGGAAATGCTTGGAAAGCCGGATACCTACGTGGTGA
TACGGTATGGAGGCGATGAGCACCGGAcaaaggaagtggaggattGCGAG
GACCCTGTATATGACGACATGTGGGTGTCCACCGCAGGCATGGCTCGAAA
CGATATGGTCGAAATAACAGTCATGGAAAAATACAATGTCAAGGATGAGG
AGCTCGGTAGCCTTACATGTGAGTAGGTATTGGTGGGTGTTGGCCCTTCA
TTCGCCCGGTGAAAGTGTATTTAGTCATGGCATCGCTTGACTATCATGCA
CATCATACTATTATCCTCCTGCTTGTCAACCCTGGCATAGCTATAATTAT
TATCATGTCACATCTTGTTTGAAGCCATGAGGAGCACATTCTGATGCTTC
CTaacctctttctctctgcccttctcccttccaacCCTAGTCCCCGCCGA
CTCCTTCGCTCATAATGTCCTGGAGGCCTCCTGGTTCGAACTGGAACGCG
ACGGCGAAGTGTGTGGAGAAATCTGCCTGGCAGCCCGATTTGCCCCCATC
CTAACGAGTGGAttgggcggggcgggaaaCCGGAGTGGCCACGGCGCTGT
CTCTGGCGACGGTCCGCTGGAGCAAGTAGCGCAATATTTCTCGGGCCCAC
GGCCTTGGTACATGCGGGGGGGATTCTACTACGATTTGAGCAAGCGGGTG
TACAGACGGGTCAAGCACCTGCCCATGCTCGGCCTGGGCCCGGCGGTGGG
AGAGTGCGTGGTCGAGAGGGTGTTGAGCCGTGTCATCTCCGTGCCCGCCG
CGGGCGACGCGCCCCTCGTCTCGAATCTCTCCCGCCTGGATCACGTGGTG
GCGGGCCTGATCTCGACGATCGACATGGGAATCGACCAAACCAAGGACCA
GATGCTTCAGTCTGCGCTCAgtctgaagaagaagatgacgGGCAAGGCGC
CCTCTGggggggccttggaggacagggagggacgagagcCAGCTTCGGCG
GCCAAGAAGAACAGCGGGATCATTTGGAGCTTGGTGGAAGGCACCGTCAC
ACACGTGGCGAAGCCGGTGGCGAGTTATGTTCCGATCGTGGGGGGGTTGG
GCGTGCGGGTCCTGGATTTTAtcgtgcctccgccccccgcgGCCGAGACA
GCTTCTGTCGTGGAATCGTTGGCCCCTGCTGCGTgtgtgggagagaagag
caCCTCCCCCTTGGCCAGGAAAGGCGGGTATACCTCGGCGTTTGACGCGC
CTTCCAAGGTGAATGCGGCTTCCGCCTCGGGGTATTAACCAGGGCCCTTT
TCAGGGTAAGCTCCTCTCTTCACCTTGCCTGTTCTGTCGGTCCTACATGC
TTCCTATTCTCAAGGAAAGTGAGCCATTCCATGATAACGCTTTTCACAAC
TGTGATTGCAGATTAGCCCGGTACAAAAGTCGATGACACTGATCCCTTTG
CACTGCTTTCCCATCGCGTCAGCCAAGGTTCAGCCTGTCGTATATACGTT
TTTCAGCGGCTGATATGAACCAACATAAGGATAACGACGGAAATTTgaag
atgggagggggagagatggaggaaaggacgatTTGGCGTAACGGAGACGG
CTAAGGCTAGTTCCAGACGGTGTTCACTCGAGCTCAAACACTTTACATAT
AAAAATCAGCGTGCGCAGGCGAGCAAGGTTGTTTTTCTCACAAGAATTGG
AAAGAAATGACATTGGAAGTCGTGAGTCG

Coding sequence (CDS) from alignment at CM002466.1:812879..815607+

>rna5774 ID=rna5774|Name=rna5774|organism=Nannochloropsis gaditana|type=CDS|length=2094bp|location=Sequence derived from alignment at CM002466.1:812879..815607+ (Nannochloropsis gaditana)
ATGCTTGGAAAGCCGGATACCTACGTGGTGATACGGTATGGAGGCGATGA
GCACCGGAcaaaggaagtggaggattGCGAGGACCCTGTATATGACGACA
TGTGGGTGTCCACCGCAGGCATGGCTCGAAACGATATGGTCGAAATAACA
GTCATGGAAAAATACAATGTCAAGGATGAGGAGCTCGGTAGCCTTACATT
CCCCGCCGACTCCTTCGCTCATAATGTCCTGGAGGCCTCCTGGTTCGAAC
TGGAACGCGACGGCGAAGTGTGTGGAGAAATCTGCCTGGCAGCCCGATTT
GCCCCCATCCTAACGAGTGGAttgggcggggcgggaaaCCGGAGTGGCCA
CGGCGCTGTCTCTGGCGACGGTCCGCTGGAGCAAGTAGCGCAATATTTCT
CGGGCCCACGGCCTTGGTACATGCGGGGGGGATTCTACTACGATTTGAGC
AAGCGGGTGTACAGACGGGTCAAGCACCTGCCCATGCTCGGCCTGGGCCC
GGCGGTGGGAGAGTGCGTGGTCGAGAGGGTGTTGAGCCGTGTCATCTCCG
TGCCCGCCGCGGGCGACGCGCCCCTCGTCTCGAATCTCTCCCGCCTGGAT
CACGTGGTGGCGGGCCTGATCTCGACGATCGACATGGGAATCGACCAAAC
CAAGGACCAGATGCTTCAGTCTGCGCTCAgtctgaagaagaagatgacgG
GCAAGGCGCCCTCTGggggggccttggaggacagggagggacgagagcCA
GCTTCGGCGGCCAAGAAGAACAGCGGGATCATTTGGAGCTTGGTGGAAGG
CACCGTCACACACGTGGCGAAGCCGGTGGCGAGTTATGTTCCGATCGTGG
GGGGGTTGGGCGTGCGGGTCCTGGATTTTAtcgtgcctccgccccccgcg
GCCGAGACAGCTTCTGTCGTGGAATCGTTGGCCCCTGCTGCGTgtgtggg
agagaagagcaCCTCCCCCTTGGCCAGGAAAGGCGGGTATACCTCGGCGT
TTGACGCGCCTTCCAAGGTGAATGCGGCTTCCGCCTCGGGGTATTAAATG
CTTGGAAAGCCGGATACCTACGTGGTGATACGGTATGGAGGCGATGAGCA
CCGGAcaaaggaagtggaggattGCGAGGACCCTGTATATGACGACATGT
GGGTGTCCACCGCAGGCATGGCTCGAAACGATATGGTCGAAATAACAGTC
ATGGAAAAATACAATGTCAAGGATGAGGAGCTCGGTAGCCTTACATTCCC
CGCCGACTCCTTCGCTCATAATGTCCTGGAGGCCTCCTGGTTCGAACTGG
AACGCGACGGCGAAGTGTGTGGAGAAATCTGCCTGGCAGCCCGATTTGCC
CCCATCCTAACGAGTGGAttgggcggggcgggaaaCCGGAGTGGCCACGG
CGCTGTCTCTGGCGACGGTCCGCTGGAGCAAGTAGCGCAATATTTCTCGG
GCCCACGGCCTTGGTACATGCGGGGGGGATTCTACTACGATTTGAGCAAG
CGGGTGTACAGACGGGTCAAGCACCTGCCCATGCTCGGCCTGGGCCCGGC
GGTGGGAGAGTGCGTGGTCGAGAGGGTGTTGAGCCGTGTCATCTCCGTGC
CCGCCGCGGGCGACGCGCCCCTCGTCTCGAATCTCTCCCGCCTGGATCAC
GTGGTGGCGGGCCTGATCTCGACGATCGACATGGGAATCGACCAAACCAA
GGACCAGATGCTTCAGTCTGCGCTCAgtctgaagaagaagatgacgGGCA
AGGCGCCCTCTGggggggccttggaggacagggagggacgagagcCAGCT
TCGGCGGCCAAGAAGAACAGCGGGATCATTTGGAGCTTGGTGGAAGGCAC
CGTCACACACGTGGCGAAGCCGGTGGCGAGTTATGTTCCGATCGTGGGGG
GGTTGGGCGTGCGGGTCCTGGATTTTAtcgtgcctccgccccccgcgGCC
GAGACAGCTTCTGTCGTGGAATCGTTGGCCCCTGCTGCGTgtgtgggaga
gaagagcaCCTCCCCCTTGGCCAGGAAAGGCGGGTATACCTCGGCGTTTG
ACGCGCCTTCCAAGGTGAATGCGGCTTCCGCCTCGGGGTATTAA

Synonyms

Publications