rna5757, rna5757 (mRNA) Nannochloropsis gaditana

Overview
Namerna5757
Unique Namerna5757
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length504
Alignment locationCM002466.1:767661..768143 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100086g3.3831.mrna
Orig protein idgnl|cribi|Naga_100086g3.3831
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:767661..768143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g3gene5562Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5757rna5757-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24931.1cds5742Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5757 ID=rna5757|Name=rna5757|organism=Nannochloropsis gaditana|type=mRNA|length=504bp
ATGGCCTCAGAAACTCTATCTCAAGATAAGATGGCCGGCCCTGTAATGAC
CTCTTCTTCCGCAACCACGCCCGTTGGCACCGTCAAACCTTTCAAGCAGC
CTTTCAAGGCTGTGGCTACACTGTCGCAGAAGACGGGCCAGATCACCAAG
CCCATCGACCCTGCCATCTCCAAGACTCTGGATTTCGTCTACTCGGGCTA
CACTAGCGTTAAGACTCAGGTGGATAAGGCTCCCAAGGTGAACCCCTACC
TCCTGATCGCTGCCGGCCTCTTCCTCTCCTGCGTGGTCTCCATCTCCCTT
CTCATTCCCGCCATCCTCTTCTTCCCCGTCACCATCTTCCTGGGGATCGC
CACTTCCTTCGCGCTCATCGCTTTGGCCCCCGCTTTCCTGATCGTGGCGT
GGGTCCTGATCTCGTCTGCGCCCATGCAGGACAAGGTGGTGGTGCCGACC
CTTGACAAGGTGCTCACGAACAAGAAGATGGCGAAGATCCTCCTCAAGGA
GTAA
back to top

protein sequence of rna5757

>rna5757-protein ID=rna5757-protein|Name=rna5757|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MCGVERAGRPATGPCVPSCCVSCNLFRAFCMICLEEDRPVEAWKLYIPVG
CRKGEDGEVELLPLLDSLGHTKTTNFFSRTFKINKILLPCSSRVYRGVLG
QIIVDEASDNRDESNEMVGAPSSSDCLHPPLRPRSCTQTPGRTQMYVCEG
LHRCITVARC
back to top

mRNA from alignment at CM002466.1:767661..768143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5757 ID=rna5757|Name=rna5757|organism=Nannochloropsis gaditana|type=mRNA|length=483bp|location=Sequence derived from alignment at CM002466.1:767661..768143+ (Nannochloropsis gaditana)
ATGTGTGGGGTGGAACGAGCAGGAAGGCCCGCGACGGGACCTTGCGTTCC
CTCGTGCTGTGTTTCCTGCAATTTATTTCGGGCTTTTTGCATGATctgct
tggaggaggatcgcCCCGTGGAAGCGTGGAAGCTGTACATTCCTGTCGGC
TGCCGGAAAGGTGAAGACGGAGAGGTGGAGCTGCTTCCGCTGCTTGATTC
TCTAGGTCATACGAAAACCACCAATTTTTTCAGTCGCACTTTCAAAATTA
ACAAGATTTTGCTGCCGTGTAGCTCACGCGTGTACAGAGGCGTTCTTGGT
CAGATAATTGTGGATGAGGCGTCGGACAACCGGGACGAGAGTAACGAGAT
GGTAGGTGCACCTTCTTCGTCCGattgcctccatccccctcttcgACCGC
GCTCCTGTACTCAAACGCCTGGGCGCACGCAAATGTACGTCTGTGAGGGC
TTGCACCGGTGTATAACGGTAGCCCGGTGTTga
back to top

Coding sequence (CDS) from alignment at CM002466.1:767661..768143+

>rna5757 ID=rna5757|Name=rna5757|organism=Nannochloropsis gaditana|type=CDS|length=483bp|location=Sequence derived from alignment at CM002466.1:767661..768143+ (Nannochloropsis gaditana)
ATGTGTGGGGTGGAACGAGCAGGAAGGCCCGCGACGGGACCTTGCGTTCC
CTCGTGCTGTGTTTCCTGCAATTTATTTCGGGCTTTTTGCATGATctgct
tggaggaggatcgcCCCGTGGAAGCGTGGAAGCTGTACATTCCTGTCGGC
TGCCGGAAAGGTGAAGACGGAGAGGTGGAGCTGCTTCCGCTGCTTGATTC
TCTAGGTCATACGAAAACCACCAATTTTTTCAGTCGCACTTTCAAAATTA
ACAAGATTTTGCTGCCGTGTAGCTCACGCGTGTACAGAGGCGTTCTTGGT
CAGATAATTGTGGATGAGGCGTCGGACAACCGGGACGAGAGTAACGAGAT
GGTAGGTGCACCTTCTTCGTCCGattgcctccatccccctcttcgACCGC
GCTCCTGTACTCAAACGCCTGGGCGCACGCAAATGTACGTCTGTGAGGGC
TTGCACCGGTGTATAACGGTAGCCCGGTGTTga
back to top
Synonyms
Publications