rna5751, rna5751 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5751
Unique Name	rna5751
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2086
Alignment location	CM002466.1:756259..758717 -

Link to JBrowse

Properties


Property Name	Value
Product	anthranilate phosphoribosyltransferase
Orig transcript id	gnl\|cribi\|Naga_100086g10.3849.mrna
Orig protein id	gnl\|cribi\|Naga_100086g10.3849
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:756259..758717 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100086g10	gene5556	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24949.1	cds5736	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5751	rna5751-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:756259..758717-
coding sequence from alignment at CM002466.1:756259..758717-

mRNA sequence

>rna5751 ID=rna5751|Name=rna5751|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp
CGCTTGACTCCTCGAATGACGTCCCGCTATTACGCGACACTCGATCTGTC
ACTCCCACTCAAAGCACCACCTTCCTCATACGTCACAGGATTGGCACCAC
ATTATCCGCGTCTCCGCCATGTTAGATCAGGCGTGGGTTTTCAAAAAGAA
TGGCGTTGTCCTCTGGTCTCGTTGCGTGGTTCCCATCAAGGGGCCTCAAG
AGGGTTTCCTGGGCTCCTCCATCGTCCATCATCTCATCCGCACCGTACTC
CTCGAAGAAAGGGCTGGCGCGGCACAGGCTACGTTGGATAAGCACGTGTG
CAAGTGGTCGCTGAGCAATGATCAGCCGGGGGTGGTGTTCGTGCTGGTGT
ACAACAAAAACGTCTTTCAAAATTTGACGTACGTGGACGAGTTTTTGCGA
CGCTTGAAGGAAGACTTTCTGGCAACCTTCTCCCCAGCGACGCTGGTCGC
TGCTTTAAGCCGCGTGAATTACGATGAGCGATTCACAAACTTGCTGGGTG
CGGCGGAAGCACGGGCACGGGCATTACGGCGGGGTGGGAATGGAAGCAGG
AAACCACCTGCCATGCCGTCTGTAGGGGTCGGCCATGCGATACGAAGAGG
AGAAGAAGCGGAGGGAAAGGGCGAGGACACGGATGGTGGGAGCAGTACAG
AAGAGGATGAGGAAATAGGAGGAGATGAAGGGCGGAGGGACGATGACACG
GAGACGGAAAGGACAGGCACCGAGGAGGAAGAGGAGCGTGTAGCGGCCGC
GAGGAGACGTCTGGCGGCACGGAGGGCTGGGGCGGGGCGGCGAAAGAAGA
AGCTGGCTGTGGGAAGGGCGACAGGGGCGGGCGTGGGAGGGTCGGGAGGG
GTACAGGAAGGGGGGGGAGCGGAGGAGGGGGCGGGGCACGTCCGGAAGGA
GGGGGGGAAAAAACCCACCACGTGGCACGACGGAAGTGGCCGCATGAGCA
AATCGGCGATGGAGGCCCTGGACCGATCGAAACGGGTGGAGAGCCTGGAC
GGTTTGGCCGAGGATCATCAGAACGAGGCGGCTTTCCAAGAGACCAGGGC
CACGTACATGCCTGCAGCCGGTGAGACACCGGAATGGGAAAAAGAGGAAG
TTGCCCTTGATTTCCTGGACGGCAAGGAGACCTCCACCTCCTCTTCAGCC
ACAACTTCCTCCTCTTTTTTCTCCAAACTATTTGCGCGGGTGACGGGTAA
CGCCGTCCTGTCAGCGGCGGAGGTGGATCCTATCATGGAGGAGATGAGGA
TGTTGCTGATTGGGAAAAACGTCGCGAGTGAAATCGCCCAGGACATTTGC
GAATCGGTGCGCACCTCCCTGGTGGGGCAGAAGCTGCCAAGCCTCACAAG
CGTGAAGACCGTTGTGCGGGAGGCCTTGGAAAGGGCCATCGTCCGTGTCT
TGACCCCGCGAAAGTCCACTGACCTCTTGCGCCAAGTCATGGCGGCCAAG
GCTGAGGGACGGCCTTATTCGGTCGTTTTCGTGGGTATCAACGGCGTGGG
GAAGTCCACCTCCCTCTCCAAGGTGTGCTACTACCTGAAGCAGCACGGTC
TCCGGGTCTTAATTGCCGCCTGCGACACCTTTCGGTCCGGCGCGGTGGAG
CAACTGAAGGTGCACGCCCGGTGCTTGGAAGTCGACCTCTACGACAAAGG
CTACCACAAAGACCCGGCAGCCGTGGCGAAAGCGGCGATCAAAGAGGCTA
CCGACAAGGGCCACGACGTCGTCTTGGTGGACACGGCGGGAAGGATGCAA
AACAAGGAGCCTCTGATGCGCGCGCTCGCCAAGTTAGTCTCTGACAACCA
GCCTGATTTGGTCGTGTTCGTGGGGGAGGCCTTGGTCGGCAACGACGGCA
TCGACCAGCTTACCGTCTTCAACCAGGCGCTTGCCAATTATTCGCCGCCA
GGGAAAACGCACCAGATCGATGGCATCATCCTGACGAAGTTCGACACTGT
GGACGAGAAAGTGGGTGCGGCCCTATCCATGTGCTACAAGACGGGACAGC
CCATTCTTTTCGTCGGTACGGGGCAAAAATACACGCATCTCAAGAAACTC
AATGTCAACTTGATCTTGAACTGCCTTTTTGGGTAA

protein sequence of rna5751

>rna5751-protein ID=rna5751-protein|Name=rna5751|organism=Nannochloropsis gaditana|type=polypeptide|length=482bp
MSRGGDPLPHPQQPSPSSLFPLSAFSASSPPKRAANYTWKSRSRYSASTP
LRLRLLLPLFILLEIRPVKAFTSPFPRYRFHSAFSLGSARIRLNPWSLPA
STLIMNEEVETNTKSGLPAPIKDKSVPLTDTSLKPFLEHIIAGASLSSSD
VEAAFDRILAGSDPVQVGALLAMLRQRGETPVEIAGMVRAMLKQRYPVSV
TGKLLDIVGTGGDGAHTINISTAAIILAAACGCKAAKLGNRSVSSKCGSA
DVLETLGIDMELTAEQVAECIETTGVGFMFAPVVHPTMKKVAPIRKALGV
RTAFNIVGPLLNAAGAQHAVVGVFQERLLDVLAGTLGEIGTVDRALIIHG
VGLDEISPLGPSTIVELKNVAPAGQARVYERTSYTFDPLTCGIPRCAIED
LRGGDATENAALLRQVLSGGPERGAKRDAVVLNAAAGLYVYGSVPSLAEG
VTLAYDILASGKALVKLDEWIACSQALKKGGG

mRNA from alignment at CM002466.1:756259..758717-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5751 ID=rna5751|Name=rna5751|organism=Nannochloropsis gaditana|type=mRNA|length=2459bp|location=Sequence derived from alignment at CM002466.1:756259..758717- (Nannochloropsis gaditana)
TTGTGGGGAGCAAGTCCCTGAGAACTAACCTTGACCAGAACGGCCTCCAG
ACCGTATTCTGTCATCTCTTTTAAGAGCTGTGATTGGTCGTACTGCCACA
GAAAGGCCAGGGACTGCAAGCCCAGTCGGTCGCAGACGCTCTCGACTCGT
GTCCGTTGATAAGTGGAAAGGACGGCACCGCTTGATACCGCCTCGACCTC
CGGATAAAGTTGTTTGACCCGAAAAAGCAAAGCATGTAGATCTTCGACTT
CATCACCTTCTGTCGGCGTGTACTGCAAGCCTTGGTGGGTACTGGCACCG
GACATGGTAGCTCTTACCATGGGCACGCCTATACATTCAGCAAGGCACTC
GACGGCAGACGACCCCGCGCTTTGAAACATGAAAGAGTCCAATTCCTCTG
GTCCATCGACTGGAGGAAACAAGTTTGCTAAAACAACGAGCTCATGTCCG
TAAGCCAGGCATTTTGCAATGCTGAAAACGCTGTCCTTACCGCCGCTAAC
TAGTGCAACAAACCGCATTCTAGGGTGGGGAGGTTAAACAACAATAGCGG
ACGGCTCTCCCCGATTGGAATTTTGGGAATTTATGAGGAGAGGTATCTCC
AGCACTTGTCTGTGTGTGAGTTTTATTTATTTGATCGATATATTAATAGT
TGGTGAGCAAATAGGGACAATATACTCGGAAAGAGCGTAGGCAACCTACT
CGCCTGCAGAGCAACTCAAGATACTGCACCTGGCGCCCTGCAGTACTGCC
CGCCATCCTCTTTTTTCGTACGCGAGCACTTATTTCCTCTTTCACCACTC
ACGCAATAGATGTCAAGAGGAGGAGACCCTTTGCCACACCCACAGCAGCC
GTCACCTTCCTCATTGTTTCCCTTATCTGCGTTCTCAGCATCGTCTCCCC
CAAAGCGAGCTGCCAACTACACTTGGAAATCCAGGTCCCGATACTCCGCT
TCCACGCCGCTCCGTTTGCGATTGTTGCTGCCATTATTTATCCTACTAGA
GATCCGACCGGTCAAGGCATTCACATCGCCATTTCCTCGGTATCGCTTCC
ACAGTGCCTTTTCACTTGGCTCGGCGCGGATAAGATTGAACCCTTGGTCT
TTACCAGCAAGCACCCTCATCATGAACGAGGAAGTAGAAACCAATACTAA
ATCAGGCCTTCCCGCACCTATCAAGGACAAATCTGTTCCTCTGACAGACA
CGTCGCTCAAACCCTTCCTGGAGCATATTATTGCGGGGGCGAGCCTGTCC
TCGAGTGACGTCGAGGCTGCTTTCGACCGCATTCTAGCCGGATCGGACCC
TGTGCAAGTAGGGGCATTGCTGGCCATGCTTCGTCAAAGGGGAGAGACCC
CCGTAGAGATCGCAGGGATGGTCCGCGCCATGTTGAAGCAGCGGTACCCG
GTGAGTGTGACGGGGAAGCTCCTTGATATTGTAGGGACGGGGGGGGACGG
GGCCCATACCATCAACATCTCCACTGCTGCAATCATCCTGGCCGCAGCCT
GCGGTTGCAAGGCCGCAAAACTGGGCAATCGGTCCGTCTCCTCCAAATGC
GGTTCCGCGGATGTGTTGGAAACGTTGGGAATTGACATGGAGCTGACAGC
GGAGCAGGTGGCCGAATGCATCGAGACGACAGGTGTCGGCTTCATGTTTG
CCCCGGTGGTCCACCCTACCATGAAGAAAGTCGCACCCATCCGCAAGGCT
TTGGGTGTCCGCACCGCCTTCAACATTGTGGGCCCGCTCTTGAATGCGGC
CGGAGCCCAGCACGCCGTGGTGGGGGTCTTCCAAGAGCGTCTCCTGGATG
TGTTGGCGGGCACGCTGGGCGAGATCGGGACGGTGGACCGGGCGCTGATC
ATCCACGGGGTGGGCCTCGACGAGATCTCTCCGCTAGGACCGTCCACGAT
TGTCGAATTGAAAAACGTGGCGCCGGCGGGGCAAGCGCGCGTGTATGAGA
GGACGAGCTACACCTTCGACCCGCTCACCTGTGGCATCCCGCGATGTGCC
ATCGAGGACCTGAGGGGCGGGGACGCCACGGAAAACGCGGCCTTGCTCCG
TCAAGTTCTCTCGGGGGGACCAGAAAGAGGGGCGAAACGGGACGCGGTCG
TTTTAAATGCGGCAGCTGGCCTGTACGTGTACGGCTCAGTCCCGAGTCTA
GCGGAGGGGGTGACGTTGGCGTACGATATCTTGGCGAGTGGGAAGGCCCT
GGTGAAGCTAGACGAATGGATCGCGTGCTCGCAGGCATTGAAAAAAGGGG
GCGGGTAGGGAGATGGTGGGCGTCCAAGGTAGGAAAGGGGAGGGGGAAGG
GGGCGGGGTGCAGGTGGTGAAGAGGGGGACAGGGAGGACAGCGCTTAGGC
GTGGAAAATGGGTGAAAGACCCGCCTATGATGCATCGAGGGTAGATTGTC
TGCAAGAGGCTATAGCACCACCATAAGATTGCCATAAATGACATAACTAT
CCTCCAGCT

Coding sequence (CDS) from alignment at CM002466.1:756259..758717-

>rna5751 ID=rna5751|Name=rna5751|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at CM002466.1:756259..758717- (Nannochloropsis gaditana)
ATGTCAAGAGGAGGAGACCCTTTGCCACACCCACAGCAGCCGTCACCTTC
CTCATTGTTTCCCTTATCTGCGTTCTCAGCATCGTCTCCCCCAAAGCGAG
CTGCCAACTACACTTGGAAATCCAGGTCCCGATACTCCGCTTCCACGCCG
CTCCGTTTGCGATTGTTGCTGCCATTATTTATCCTACTAGAGATCCGACC
GGTCAAGGCATTCACATCGCCATTTCCTCGGTATCGCTTCCACAGTGCCT
TTTCACTTGGCTCGGCGCGGATAAGATTGAACCCTTGGTCTTTACCAGCA
AGCACCCTCATCATGAACGAGGAAGTAGAAACCAATACTAAATCAGGCCT
TCCCGCACCTATCAAGGACAAATCTGTTCCTCTGACAGACACGTCGCTCA
AACCCTTCCTGGAGCATATTATTGCGGGGGCGAGCCTGTCCTCGAGTGAC
GTCGAGGCTGCTTTCGACCGCATTCTAGCCGGATCGGACCCTGTGCAAGT
AGGGGCATTGCTGGCCATGCTTCGTCAAAGGGGAGAGACCCCCGTAGAGA
TCGCAGGGATGGTCCGCGCCATGTTGAAGCAGCGGTACCCGGTGAGTGTG
ACGGGGAAGCTCCTTGATATTGTAGGGACGGGGGGGGACGGGGCCCATAC
CATCAACATCTCCACTGCTGCAATCATCCTGGCCGCAGCCTGCGGTTGCA
AGGCCGCAAAACTGGGCAATCGGTCCGTCTCCTCCAAATGCGGTTCCGCG
GATGTGTTGGAAACGTTGGGAATTGACATGGAGCTGACAGCGGAGCAGGT
GGCCGAATGCATCGAGACGACAGGTGTCGGCTTCATGTTTGCCCCGGTGG
TCCACCCTACCATGAAGAAAGTCGCACCCATCCGCAAGGCTTTGGGTGTC
CGCACCGCCTTCAACATTGTGGGCCCGCTCTTGAATGCGGCCGGAGCCCA
GCACGCCGTGGTGGGGGTCTTCCAAGAGCGTCTCCTGGATGTGTTGGCGG
GCACGCTGGGCGAGATCGGGACGGTGGACCGGGCGCTGATCATCCACGGG
GTGGGCCTCGACGAGATCTCTCCGCTAGGACCGTCCACGATTGTCGAATT
GAAAAACGTGGCGCCGGCGGGGCAAGCGCGCGTGTATGAGAGGACGAGCT
ACACCTTCGACCCGCTCACCTGTGGCATCCCGCGATGTGCCATCGAGGAC
CTGAGGGGCGGGGACGCCACGGAAAACGCGGCCTTGCTCCGTCAAGTTCT
CTCGGGGGGACCAGAAAGAGGGGCGAAACGGGACGCGGTCGTTTTAAATG
CGGCAGCTGGCCTGTACGTGTACGGCTCAGTCCCGAGTCTAGCGGAGGGG
GTGACGTTGGCGTACGATATCTTGGCGAGTGGGAAGGCCCTGGTGAAGCT
AGACGAATGGATCGCGTGCTCGCAGGCATTGAAAAAAGGGGGCGGGTAG

Synonyms

Publications