rna5669, rna5669 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5669
Unique Name	rna5669
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1392
Alignment location	CM002466.1:534566..537193 +

Link to JBrowse

Properties


Property Name	Value
Product	aarF domain-containing protein kinase
Orig transcript id	gnl\|cribi\|Naga_100068g4.2430.mrna
Orig protein id	gnl\|cribi\|Naga_100068g4.2430
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:534566..537193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100068g4	gene5477	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5669	rna5669-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25006.1	cds5654	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:534566..537193+
coding sequence from alignment at CM002466.1:534566..537193+

mRNA sequence

>rna5669 ID=rna5669|Name=rna5669|organism=Nannochloropsis gaditana|type=mRNA|length=1392bp
ACCTGGACTGTTGACTGAACAAATGGGGGTCCAGCCGATTGTAGTGAATC
GACTTGATATGCATGCATGGCTTCAGATCAGCTCAAAATGAGAGTCTGAG
TGACATGGGGCATCGAAGCTGACAAACGATTCAATTTTACTTCTTCCTTT
TTCACAGTGCTTCTCAGCCCGTTGCCCTTAAGGCACTCCCCTGCCCTTTC
ACGATAGGTCCTATTTCGGATCCAGGCACTTGGCAACAGCAAGACTGGTC
GCAATGTCACTCAAGCGACTCTCTGTGCTGACAGGACACACAGACAGAGT
GTGGCATGTATCCTGGAGCCCGTGTGGCAGATACCTCGCCTCTTGCGGGG
GCGACAGGGCTATACGGGTCTGGGGTGCGCCGACCCTGAGCTCTGGACCC
CGCACAGACCAAGACGGCGACAAAGACGACAGGAATGAGGAAGAGGCAGG
CCAAGAAGAGGGGGGCGGCACTTGGCGTTTGTTGGCTACATTAGGGGATG
GACAGACTCGGACGGTACGGTGCTGTGAATGGTCCCCTTGCGGAAACATG
CTAGCGGCCGTAAGCTTCGACTCCACATGCGTGATATGGGAGCTGCAGCC
GTCCAGGGCGCAAGCAGGAAGGGAAATGGAATGGGAGCTGGCGGCCTCCG
TGGAAGGGCACGAGCACGAAGCCAAGTGCGTGGCCTGGAATCGGGGAGGG
ACCTTGCTGGCGACTTGCTCCCGGGACAAGAGCGTGTGGATCTGGGAGTG
CTTACAGGACAACGACTTCGAATGCCTAAGCGTGCTTCACGGACACGATC
AAGACGTGAAGTTCGTCCGCTTCCACCCCCGTGAAGACGTCTTGTTCAGC
GCCAGCTACGACGACACGCTCAAGGTCTGGGAGGAGGAGGAGGACGACTG
GGCCTGTGTGAGCACGCTGAAGGGGCACACCTCAACCGTCTGGGGCCTGT
CCATCGGGAGTCGGGACGACGGTATGGTGTCCTGCAGCGACGACGGCACG
CTCATCGTGTGGAAAGCCGCCGGCGGGGCGGGGCGCTACGACAAATGGCG
ACAGCTGACGCGGTTGGAGGCCCCCGGCAAGGCCACCGTCTACAGCGTCG
ACTGGTCCAGGGAGAGCGGGGCCATCGCCTCGGGGGGGGCAGACGACGCG
ATTCGCATTTACGTGGAGGACGTGGAGGACCCGCAAGGCTGGGCCTTGGA
CACCCCTAGCTTTGTCTGCGAGGCCGACGTGCCTGGAGCCCACGACGCGG
ACGTGAACTGCGTGAGATGGAACCCGGTGCGACCGGATTTACTGGCCTCG
GCCGGGGATGATCAGGCCGTGCGGATTTGGAGCTTTCGGCGTCGGGGAGA
ATAACACCAGACCATGAAGAAATGTGTGCTAAATGTTTTATG

protein sequence of rna5669

>rna5669-protein ID=rna5669-protein|Name=rna5669|organism=Nannochloropsis gaditana|type=polypeptide|length=642bp
MLSGALNMRPLLGRTMVTSRQQLHRLPLAHKTTTQASPLLHLPRSRAAPR
RRLTTDSKTSTGNSSSQKPPSTGAAALKRADKYLGLKLMGGVLGACVGVG
GIVYYYAVAEDRALKKAMEDPSIAVEPPPPEFVHPYLEKPWWWRALFAIG
RAVYVASVFLPVAGMGLVSVYIFPDSKKWRERFLNALIRGMERAGCCFMK
LGQWISMRPDMFPRDVVKTMARLRDGVPPHAFKHTQESIRVSFGKEIEDI
FESFEETPIASGTVAQVHRARLRPAYAIHGSVQDVAVKVRHPNILNETFL
DLDLIFGFVDTFFPEKYSMPCSQDELTHILRQQLDLQWEAYNLYKFSTNF
RHELQSGLVHFPQVSKELCSDSILVESWVEGATIATVFSDIEGGEEHTWS
SSKTLTDNFSEAVMAKKKQLAKVLFDMNVKMFLRDNYVHGDMHAGNLIVS
MEDGRVTVIDAGLITSLKPDVANPFGDFLRALCNSDVDTIVSKILQFNVG
KVPVDKAAFRDRIKEITEHFKNQEEDDDARPGSVVKQTSAPSKVGRDGRY
ALGDVVGEILLSLQRFKIVLRGDVAASIMTISVSEGLILQLDPDFDMVRQ
ALPFFVRYKGWSTAEAVMRGRESPTPTNAPSSPETGQSTVAA

mRNA from alignment at CM002466.1:534566..537193+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5669 ID=rna5669|Name=rna5669|organism=Nannochloropsis gaditana|type=mRNA|length=2628bp|location=Sequence derived from alignment at CM002466.1:534566..537193+ (Nannochloropsis gaditana)
GGCTCaacttctttttttcccatcCTGGATGTTCACTTTACAGGTGTAAT
TTTTGGCTTACGTGTGCTGTGTATAAGTACCGGCTGCTATTCGCGTTTTC
GTCCTGTCCTTTATAGAGGGAACCATCAGCTGATTTGACAACGACACGCA
CCCCCTTGCATCTATAGACTATTCTCACCGCTTTTCTGCCTGGAAGAGGC
GACATCGGCTATGCTTAGCGGTGCACTTAACATGAGACCATTGTTGGGAC
GGACGATGGTCACAAGCAGGCAGCAATTGCATCGCTTACCGCTTGCGCAC
AAGGTATTTAGGGGAAAGCCAGGCATGGGGCGGATCACTTTAATCACTGA
CCTATACGCATCCACGCTTCGGCACCAAGGAGTCTGTAATGCATACTCTG
TTGGCATTAGATACGATAGATACGGAAAGCACATTTCAAATGTTGTGATC
GGGTGTTGCTCCTTGGATTCTCAAACGCGTGTCACGGCTCTGCCTCCCAG
ACCACAACACAGGCGTCGCCCCTCCTGCACCTGCCTCGTTCTCGAGCAGC
TCCGCGTCGACGCCTGACCACTGACAGCAAAACGTCCACTGGCAATTCGT
CCTCACAGAAACCACCAAGTACGGGGGCGGCGGCTCTAAAGCGGGCCGAC
AAATACTTGGGACTGAAATTGATGGGAGGGGTACTGGGAGCCTGcgtcgg
ggtggggggaatCGTGTACTACTACGCTGTTGCCGAGGACCGCGCGTTAA
AAAAAGCCATGGAAGACCCGTCTATCGCGGTCgaaccgcctcctcccgag
TTTGTGCACCCGTACCTGGAGAAAccctggtggtggcgagCCCTGTTCGC
TATTGGCCGGGCTGTGTATGTGGCCTCTGTCTTCTTGCCCGTCGCGGGGA
TGGGTCTGGTCTCTGTCTACATATTCCCCGACTCGAAAAAGTGGCGCGAA
CGTTTCCTGAACGCCTTGATCCGCGGCATGGAGCGCGCCGGGTGCTGCTT
CATGAAACTCGGTCAGTGGATCTCCATGCGCCCTGACATGTTCCCGCGCG
ACGTGGTCAAGACCATGGCCCGGCTCAGGGACGGCGTGCCCCCGCATGCC
TTCAAACACACCCAGGAGTCGATCCGGGTGTCCTTTGGCAAGGAGATCGA
GGACATATTCGAGTCCTTCGAGGAAACCCCCATCGCTTCCGGCACTGTCG
CCCAGGTGCATCGTGCGCGCCTACGGCCGGCGTACGCCATCCACGGCTCG
GTTCAGGATGTGGCGGTCAAGGTCCGCCACCCGAATATACTCAACGAGAC
CTTCCTGGATTTGGACTTGATCTTTGGCTTCGTGGACACCTTCTTTCCGG
AGAAATACTCGATGCCCTGCTCCCAGGACGAGCTCACCCACATTCTGCGC
CAGCAGCTTGATTTGCAGTGGGAGGCCTACAATTTGTATAAGTTTTCCAC
CAACTTCAGGCACGAGCTCCAGTCTGGCCTCGTGCATTTCCCACAGGTGA
GCAAGGAGCTGTGCTCGGATTCGATCCTGGTCGAAAgctgggtggaggga
gcgacgatCGCCACCGTCTTCTCGGATAtcgagggaggtgaagagcACAC
GTGGTCGTCCAGCAAGACACTGACGGACAATTTCTCGGAGGCGGTCATgg
ccaagaagaagcagctggCGAAAGTCCTTTTCGACATGAACGTGAAGATG
TTCCTCCGGGATAATTACGTGCACGGGGATATGCACGCCGGAAACTTGAT
CGTGtccatggaggacgggcgcgtCACCGTAATCGACGCGGGGCTGATCA
CATCTCTCAAGCCCGACGTGGCGAACCCTTTCGGAGACTTCTTGCGAGCA
TTGTGCAATTCTGACGTAGACACGATCGTGAGCAAGATCCTCCAATTCAA
CGTCGGGAAAGTCCCGGTTGACAAGGCAGCGTTTCGGGACAGGATCAAGG
AGATCACGGAGCATTTCAAAaaccaggaggaagacgacgatgCTCGACCT
GGAAGCGTCGTGAAACAGACGTCGGCTCCCAGCAAGGTCGGTCGCGATGG
GCGCTACGCCTTGGGGGATGTGGTGGGGGAGATCTTGCTGAGTTTGCAGC
GCTTCAAAATCGTTTTACGCGGGGACGTGGCGGCATCGATCATGACGATC
TCGGTATCGGAAGGCTTGATCTTGCAATTGGACCCCGATTTCGACATGGT
GCGGCAAGCTTTGCCATTCTTTGTTCGCTATAAGGGGTGGAGCACAGCCG
AAGCTGTGATGCGGGGACGGGAGTCCCCTACCCCAACGAACgcgccctcg
tccccagAAACTGGACAGTCCACGGTGGCAGCATAACGAGCAAGGGATAA
ATAAAGGGTCAAGCCTTTGACAATCAAATTGTTTCACTTAAGCCATCAGT
GAGAAACCGCAAAGCAAGTTCACACACAACACCCCCAAATCAACAAGGGT
CATGTAGAGTCCCGAGTGAGCCCTTTCACATCATGAAGGTTCATGTCGTG
AGAAGGTTACAGTTGGACAAGCTACGCCACCCCTCGGTGGCCTTGCTGTG
CATTCAAACGTAATTTTGTCTCCGAAGACGACAGACGTGAGCTGGCGACG
AAAGAACCAAGTGGAAAGCGTGATGACC

Coding sequence (CDS) from alignment at CM002466.1:534566..537193+

>rna5669 ID=rna5669|Name=rna5669|organism=Nannochloropsis gaditana|type=CDS|length=3858bp|location=Sequence derived from alignment at CM002466.1:534566..537193+ (Nannochloropsis gaditana)
ATGCTTAGCGGTGCACTTAACATGAGACCATTGTTGGGACGGACGATGGT
CACAAGCAGGCAGCAATTGCATCGCTTACCGCTTGCGCACAAGACCACAA
CACAGGCGTCGCCCCTCCTGCACCTGCCTCGTTCTCGAGCAGCTCCGCGT
CGACGCCTGACCACTGACAGCAAAACGTCCACTGGCAATTCGTCCTCACA
GAAACCACCAAGTACGGGGGCGGCGGCTCTAAAGCGGGCCGACAAATACT
TGGGACTGAAATTGATGGGAGGGGTACTGGGAGCCTGcgtcggggtgggg
ggaatCGTGTACTACTACGCTGTTGCCGAGGACCGCGCGTTAAAAAAAGC
CATGGAAGACCCGTCTATCGCGGTCgaaccgcctcctcccgagTTTGTGC
ACCCGTACCTGGAGAAAccctggtggtggcgagCCCTGTTCGCTATTGGC
CGGGCTGTGTATGTGGCCTCTGTCTTCTTGCCCGTCGCGGGGATGGGTCT
GGTCTCTGTCTACATATTCCCCGACTCGAAAAAGTGGCGCGAACGTTTCC
TGAACGCCTTGATCCGCGGCATGGAGCGCGCCGGGTGCTGCTTCATGAAA
CTCGGTCAGTGGATCTCCATGCGCCCTGACATGTTCCCGCGCGACGTGGT
CAAGACCATGGCCCGGCTCAGGGACGGCGTGCCCCCGCATGCCTTCAAAC
ACACCCAGGAGTCGATCCGGGTGTCCTTTGGCAAGGAGATCGAGGACATA
TTCGAGTCCTTCGAGGAAACCCCCATCGCTTCCGGCACTGTCGCCCAGGT
GCATCGTGCGCGCCTACGGCCGGCGTACGCCATCCACGGCTCGGTTCAGG
ATGTGGCGGTCAAGGTCCGCCACCCGAATATACTCAACGAGACCTTCCTG
GATTTGGACTTGATCTTTGGCTTCGTGGACACCTTCTTTCCGGAGAAATA
CTCGATGCCCTGCTCCCAGGACGAGCTCACCCACATTCTGCGCCAGCAGC
TTGATTTGCAGTGGGAGGCCTACAATTTGTATAAGTTTTCCACCAACTTC
AGGCACGAGCTCCAGTCTGGCCTCGTGCATTTCCCACAGGTGAGCAAGGA
GCTGTGCTCGGATTCGATCCTGGTCGAAAgctgggtggagggagcgacga
tCGCCACCGTCTTCTCGGATAtcgagggaggtgaagagcACACGTGGTCG
TCCAGCAAGACACTGACGGACAATTTCTCGGAGGCGGTCATggccaagaa
gaagcagctggCGAAAGTCCTTTTCGACATGAACGTGAAGATGTTCCTCC
GGGATAATTACGTGCACGGGGATATGCACGCCGGAAACTTGATCGTGtcc
atggaggacgggcgcgtCACCGTAATCGACGCGGGGCTGATCACATCTCT
CAAGCCCGACGTGGCGAACCCTTTCGGAGACTTCTTGCGAGCATTGTGCA
ATTCTGACGTAGACACGATCGTGAGCAAGATCCTCCAATTCAACGTCGGG
AAAGTCCCGGTTGACAAGGCAGCGTTTCGGGACAGGATCAAGGAGATCAC
GGAGCATTTCAAAaaccaggaggaagacgacgatgCTCGACCTGGAAGCG
TCGTGAAACAGACGTCGGCTCCCAGCAAGGTCGGTCGCGATGGGCGCTAC
GCCTTGGGGGATGTGGTGGGGGAGATCTTGCTGAGTTTGCAGCGCTTCAA
AATCGTTTTACGCGGGGACGTGGCGGCATCGATCATGACGATCTCGGTAT
CGGAAGGCTTGATCTTGCAATTGGACCCCGATTTCGACATGGTGCGGCAA
GCTTTGCCATTCTTTGTTCGCTATAAGGGGTGGAGCACAGCCGAAGCTGT
GATGCGGGGACGGGAGTCCCCTACCCCAACGAACgcgccctcgtccccag
AAACTGGACAGTCCACGGTGGCAGCATAAATGCTTAGCGGTGCACTTAAC
ATGAGACCATTGTTGGGACGGACGATGGTCACAAGCAGGCAGCAATTGCA
TCGCTTACCGCTTGCGCACAAGACCACAACACAGGCGTCGCCCCTCCTGC
ACCTGCCTCGTTCTCGAGCAGCTCCGCGTCGACGCCTGACCACTGACAGC
AAAACGTCCACTGGCAATTCGTCCTCACAGAAACCACCAAGTACGGGGGC
GGCGGCTCTAAAGCGGGCCGACAAATACTTGGGACTGAAATTGATGGGAG
GGGTACTGGGAGCCTGcgtcggggtggggggaatCGTGTACTACTACGCT
GTTGCCGAGGACCGCGCGTTAAAAAAAGCCATGGAAGACCCGTCTATCGC
GGTCgaaccgcctcctcccgagTTTGTGCACCCGTACCTGGAGAAAccct
ggtggtggcgagCCCTGTTCGCTATTGGCCGGGCTGTGTATGTGGCCTCT
GTCTTCTTGCCCGTCGCGGGGATGGGTCTGGTCTCTGTCTACATATTCCC
CGACTCGAAAAAGTGGCGCGAACGTTTCCTGAACGCCTTGATCCGCGGCA
TGGAGCGCGCCGGGTGCTGCTTCATGAAACTCGGTCAGTGGATCTCCATG
CGCCCTGACATGTTCCCGCGCGACGTGGTCAAGACCATGGCCCGGCTCAG
GGACGGCGTGCCCCCGCATGCCTTCAAACACACCCAGGAGTCGATCCGGG
TGTCCTTTGGCAAGGAGATCGAGGACATATTCGAGTCCTTCGAGGAAACC
CCCATCGCTTCCGGCACTGTCGCCCAGGTGCATCGTGCGCGCCTACGGCC
GGCGTACGCCATCCACGGCTCGGTTCAGGATGTGGCGGTCAAGGTCCGCC
ACCCGAATATACTCAACGAGACCTTCCTGGATTTGGACTTGATCTTTGGC
TTCGTGGACACCTTCTTTCCGGAGAAATACTCGATGCCCTGCTCCCAGGA
CGAGCTCACCCACATTCTGCGCCAGCAGCTTGATTTGCAGTGGGAGGCCT
ACAATTTGTATAAGTTTTCCACCAACTTCAGGCACGAGCTCCAGTCTGGC
CTCGTGCATTTCCCACAGGTGAGCAAGGAGCTGTGCTCGGATTCGATCCT
GGTCGAAAgctgggtggagggagcgacgatCGCCACCGTCTTCTCGGATA
tcgagggaggtgaagagcACACGTGGTCGTCCAGCAAGACACTGACGGAC
AATTTCTCGGAGGCGGTCATggccaagaagaagcagctggCGAAAGTCCT
TTTCGACATGAACGTGAAGATGTTCCTCCGGGATAATTACGTGCACGGGG
ATATGCACGCCGGAAACTTGATCGTGtccatggaggacgggcgcgtCACC
GTAATCGACGCGGGGCTGATCACATCTCTCAAGCCCGACGTGGCGAACCC
TTTCGGAGACTTCTTGCGAGCATTGTGCAATTCTGACGTAGACACGATCG
TGAGCAAGATCCTCCAATTCAACGTCGGGAAAGTCCCGGTTGACAAGGCA
GCGTTTCGGGACAGGATCAAGGAGATCACGGAGCATTTCAAAaaccagga
ggaagacgacgatgCTCGACCTGGAAGCGTCGTGAAACAGACGTCGGCTC
CCAGCAAGGTCGGTCGCGATGGGCGCTACGCCTTGGGGGATGTGGTGGGG
GAGATCTTGCTGAGTTTGCAGCGCTTCAAAATCGTTTTACGCGGGGACGT
GGCGGCATCGATCATGACGATCTCGGTATCGGAAGGCTTGATCTTGCAAT
TGGACCCCGATTTCGACATGGTGCGGCAAGCTTTGCCATTCTTTGTTCGC
TATAAGGGGTGGAGCACAGCCGAAGCTGTGATGCGGGGACGGGAGTCCCC
TACCCCAACGAACgcgccctcgtccccagAAACTGGACAGTCCACGGTGG
CAGCATAA

Synonyms

Publications