rna5597, rna5597 (mRNA) Nannochloropsis gaditana

Overview
Namerna5597
Unique Namerna5597
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2334
Alignment locationCM002466.1:372826..374259 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g7.2924.mrna
Orig protein idgnl|cribi|Naga_100016g7.2924
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:372826..374259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g7gene5409Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5597rna5597-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25115.1cds5583Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5597 ID=rna5597|Name=rna5597|organism=Nannochloropsis gaditana|type=mRNA|length=2334bp
ATGGAGCTTGTGAAGCAACGCCAAGCTCTTGCCGAGAAGAAGCACGAGGA
GAGGCAGAGGGCTGTGGCCGAAAAAGCCGAAAAAGCCCGTTCGCGCCAAG
AGGAGAAGGCACGCAAGAAGGAGGAGCGGGAACAGAAGGAAAAGGAGCGG
CAAGAGGAGAAGAGGCAGAAGGAAGAGGCTGCGGCCGCGGCGGCAGCGGC
TGATGGAGACGACGGGGACGAAAGTGGGAAAAAAAAAAGTGTCACGGCGT
TGGACGTGAAACAGCCTGCAATCTCCGCCTTCTTCAAGGCCAAAGCGCCC
GCCCTGGACACAGCACAGAAGGTACACCCTGGTAGGCTTGTGAGCTTGTC
GGGACCCTCCACTCTTCTTGGCGGCCTTCTGCCTGGAGACGCGAAAGGGA
CTCCGGGCGCGAAAATGGGCGGCGAGACAGGGGAGGATGGCGGCGGCATC
AGTGACGTGCAGATGGCTATTGCAGCCAAGGTGGAGATAATGGATGCCAT
ACTGAAGAAAGGTCCCATGGACCGAGAGGAACTCTTGAAAGACCTGCGAT
TGCGCGGCAAGACTGCGCTTTGCACACCGCGCAACCCGAAGCACAAAGCC
CATCGGTTTCAGACGGTACATGTGACGGTGACGCACAGGGCCGCTGAGGG
GGGCATGTGGGCACAGCCGGAATTCGCCGTGCTGGAGGAAAAGCGCCTGT
GGAATGCAATGAAATTTCTCTCTTTTGCTGAGGACGTGCGCCCGCCTTAC
TATGGGACCTGGTCGCGACGCAGCCGAGAAGTCAGGCCTCGGCATTTCTG
GGGAAAATCCAAGCTGCTCGATTACGACTACGATTCGGAGGAGGACTGGG
AGGAAGGGGAGGAAGACGGTGACGGGGAGAACCTTTCTGTGACGGCCGAG
AACGACCGGGAGGAGGACCAGGACCCTCACGACGGCTTGGACTACACGGA
CGGGTGGCTGGCGCGCGACGATGAAGTGGAGCGGGAGGATGACGTCGACG
GGGGCGACGGAGAGGAGGGGACGGGCAACCGGCCAGGGTGCTCCGAAGAC
CGAGGCTTTGTCCGTGTGGGTGTGCATTTCTTTGACGCCAACTTTGAAGC
TGAACGGCCCATCGTCGACGAACGCATTCGTCCTGCCCTGGCAGATCTTC
GCGTAATCCCTACTCAGCCCGGGAGTCTGCCTATTAAGTTGCCTTACTTT
GGTGCGCCGGCGGAGGAGGGTGAGGTTAATCCTGGGGGTATGGGTGCAGT
CGTGGGTTCTTCCGACACGACCCCGCAACAGGGAGAATCAAAAGGTGACG
AGACCCAGGAGGAAAAATCCTCAGGTGCTAAGAATGGGGACGAAACAGGT
TCATCGAATGGAAAAGCAGCTCGGGGCTCAAAGGCACTAGAGGGAGCCCT
GGTCCCGGAGCTCTTGAAAATGGTTGAGGGGAGTCGACTTGGTAAAGACA
AGATCACTGAATCGTTCCTAAGAGATCACCCAAAAGCGGCATCCAAGGCC
CAGGTCAGGACTCTTATCGAAAAAAGTGCCGACAAAGTGACAGGTGGTAA
AGGCACCACTGCTGGCAAAGCGTTTTGGGCAGTAAAGCAGGAGCTGATCG
ATCAATACCAGCTACAACGCTACCATCCTCCTTCTGCCCCAACCCCTCCG
GTGGACAAGACAACTGGCAGTAAGGCGAATGGTGTGGGCTGTAAGGGTGG
AGGAGCCAAAGCACCAAGAAAACGCAAGGCCAACCCGAGCGATATCCCGA
CTGGTACTGCACATGACTCCGCAGCAACCCCACCCACGGCAGTCTCGGAT
TCGGAATCGGTCCCGCTTGAGGGTGCACCTGTCTGTAGTGGACGTGATTC
CAAAGCGACGGCGCAGGGCAACGCAGAGGGGAATGCTTCGGGGTGCGACG
TGCTAAAAGACCATCCATGCAAGAGGGCTCGAAAGGCAGGAACGGGGGGC
GGTGGAAAGGATGCGCTCAAAGGCGTACCAGTACTCACGAAGTTTTTTGT
CAAGTCCGCTGAGGCTGGTTCGGGGCAAATGGTGCCAGAATCTAGCGAAG
TTTTACAGAGACTTTCGCCGCTTTCTCCGGCATGTACGGTCGAGATCGCC
TCTGAGAAAATACCAGGGGCAGTCAGAGCAGCAGCACCTGAGGAGAAGGA
AGACATGGCAACGGATGCAACATCCGCAGAGAGTGTGTACGGAAACCCAG
TGCAGCGTAAATCGTGGACTTTGAAAGATTCCCTCGATAGCTTTGAGTTG
TATCGCTTAATGTTACGACAAAAACAAGTGCAAAATGGCGTGAAATATAA
ACGATATTATGTAATCAATATTTCTATCATGTGA
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protein sequence of rna5597

>rna5597-protein ID=rna5597-protein|Name=rna5597|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MENASAQTPTARMKHLRTLFVDKYLESSTKHLCTTDIPEAFADLKSQLDG
PSFNILMTMVKEKMQALGPFAQKEFQELCTELGLEDKFRQVEAQISEAAT
HREAASRTKGRRNARTGKEGMKSTDPQEQFGNENCNDSVADDMPPEDSAR
HRRMVIKRKELAELRGMQEREVTLLRDAEESLKATKDKMRAVYHDMSSLA
PEAQRLLQRCTEN
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mRNA from alignment at CM002466.1:372826..374259+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5597 ID=rna5597|Name=rna5597|organism=Nannochloropsis gaditana|type=mRNA|length=1434bp|location=Sequence derived from alignment at CM002466.1:372826..374259+ (Nannochloropsis gaditana)
AGGGCGTGTGCTCTTCGGCgttcttttcccttcgcAGTCGTTTGAGGCCG
GACCCTTTTTAAGCCCCCTTACGCCGTCTGGCTtcattcccgccctcgcc
cacacCTCGTCTCACAAATTTCACGCCCCCCACCGCAATTGACGCGCTAG
TACATACCTACCCCGGCATAGACCAAAACTTTGCTTAAAGCAACTTGGAA
TCTTACTTTCTTTTTGTCTCCAGACAGGGACCTTCTCGGCTGTTGCTATT
CGTCATCATGGAGAACGCCAGTGCCCAAACCCCCACTGCCAGGATGAAGC
ATTTGCGAACATTGTTTGTGGACAAATACCTGGAAAGTTCCACGAAGCAC
CTCTGTACTACTGACATACCGGTACGGAGTCCGTTtccgggaaggaaaag
cccTGTGTGTAAATTAATTGAGGGGTGCAACCGTATTTTATAGCGATTga
tgtttccctccctgctgttGTCAAGTCATCATGTTACGCATTCCTGGTCT
TTGCGTCACGATTACTGCACATCTTTCTTTACTTTTTGTCACTGGCGAAC
AGGAAGCGTTTGCAGATTTGAAAAGCCAGTTGGACGGGCCCTCTTTCAAC
ATCTTGATGACAATggtgaaagaaaaaatgcaAGCTTTAGGACCTTTTGC
TCAAAAGGAATTTCAAGAACTATGCACCGAGCTAGGTCTGGAAGATAAAT
TTCGTCAAGTGGAGGCACAGATATCGGAGGCGGCAACTCATCGCGAAGCG
GCCAGTCgcacgaaggggaggagaaacgcaCGTactgggaaagagggaat
gaAGTCGACGGACCCCCAGGAGCAATTTGGAAACGAGAACTGCAATGACA
GTGTGGCGGACGACATGCCTCCTGAAGATTCAGCGCGGCATCGGCGAATG
GTCATTAAGCGCAAGGAGCTGGCCGAGCTGCGGGGCATGCAGGAGAGGGT
AGGTCGATGTAGGGGGTCCAGAGGGGAAAGCCGTGACTGCGTGCATCCTT
TGGATCGGGTGGCTCCTGAAGGTGCCCGCGACCATCCAACCTGCCTCGTC
GTCTTATTGTCTCTGCCACTACACAGGAGGTCACTCTCTTACGCGATGCG
GAGGAAAGCTTGAAGGCCACCAAGGACAAGATGCGGGCGGTCTATCATGA
CATGAGCTCGTTGGCTCCTGAGGCACAAAGACTCCTGCAGCGTTGTACCG
AAAATTAAATATTTGTTGTTATCAAATTCAGTGGGAGCGAGTGTAGGAAA
CGGTCTATCGTGTGGAGCAAGCCTGTGTAATATTTCTCGCACAAAAATAC
GGAAGCGAGCAATGAAAGGCCAGACCTGCGTatgagaggatggagggata
gAAAGTACTGTACCGGACTTTCTGATGTGTATACACAAAGATATCGACTT
GCGTCAAACAAACAATCGTTTCACAAATGGCGAG
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Coding sequence (CDS) from alignment at CM002466.1:372826..374259+

>rna5597 ID=rna5597|Name=rna5597|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at CM002466.1:372826..374259+ (Nannochloropsis gaditana)
ATGGAGAACGCCAGTGCCCAAACCCCCACTGCCAGGATGAAGCATTTGCG
AACATTGTTTGTGGACAAATACCTGGAAAGTTCCACGAAGCACCTCTGTA
CTACTGACATACCGGAAGCGTTTGCAGATTTGAAAAGCCAGTTGGACGGG
CCCTCTTTCAACATCTTGATGACAATggtgaaagaaaaaatgcaAGCTTT
AGGACCTTTTGCTCAAAAGGAATTTCAAGAACTATGCACCGAGCTAGGTC
TGGAAGATAAATTTCGTCAAGTGGAGGCACAGATATCGGAGGCGGCAACT
CATCGCGAAGCGGCCAGTCgcacgaaggggaggagaaacgcaCGTactgg
gaaagagggaatgaAGTCGACGGACCCCCAGGAGCAATTTGGAAACGAGA
ACTGCAATGACAGTGTGGCGGACGACATGCCTCCTGAAGATTCAGCGCGG
CATCGGCGAATGGTCATTAAGCGCAAGGAGCTGGCCGAGCTGCGGGGCAT
GCAGGAGAGGGAGGTCACTCTCTTACGCGATGCGGAGGAAAGCTTGAAGG
CCACCAAGGACAAGATGCGGGCGGTCTATCATGACATGAGCTCGTTGGCT
CCTGAGGCACAAAGACTCCTGCAGCGTTGTACCGAAAATTAAATGGAGAA
CGCCAGTGCCCAAACCCCCACTGCCAGGATGAAGCATTTGCGAACATTGT
TTGTGGACAAATACCTGGAAAGTTCCACGAAGCACCTCTGTACTACTGAC
ATACCGGAAGCGTTTGCAGATTTGAAAAGCCAGTTGGACGGGCCCTCTTT
CAACATCTTGATGACAATggtgaaagaaaaaatgcaAGCTTTAGGACCTT
TTGCTCAAAAGGAATTTCAAGAACTATGCACCGAGCTAGGTCTGGAAGAT
AAATTTCGTCAAGTGGAGGCACAGATATCGGAGGCGGCAACTCATCGCGA
AGCGGCCAGTCgcacgaaggggaggagaaacgcaCGTactgggaaagagg
gaatgaAGTCGACGGACCCCCAGGAGCAATTTGGAAACGAGAACTGCAAT
GACAGTGTGGCGGACGACATGCCTCCTGAAGATTCAGCGCGGCATCGGCG
AATGGTCATTAAGCGCAAGGAGCTGGCCGAGCTGCGGGGCATGCAGGAGA
GGGAGGTCACTCTCTTACGCGATGCGGAGGAAAGCTTGAAGGCCACCAAG
GACAAGATGCGGGCGGTCTATCATGACATGAGCTCGTTGGCTCCTGAGGC
ACAAAGACTCCTGCAGCGTTGTACCGAAAATTAAATGGAGAACGCCAGTG
CCCAAACCCCCACTGCCAGGATGAAGCATTTGCGAACATTGTTTGTGGAC
AAATACCTGGAAAGTTCCACGAAGCACCTCTGTACTACTGACATACCGGA
AGCGTTTGCAGATTTGAAAAGCCAGTTGGACGGGCCCTCTTTCAACATCT
TGATGACAATggtgaaagaaaaaatgcaAGCTTTAGGACCTTTTGCTCAA
AAGGAATTTCAAGAACTATGCACCGAGCTAGGTCTGGAAGATAAATTTCG
TCAAGTGGAGGCACAGATATCGGAGGCGGCAACTCATCGCGAAGCGGCCA
GTCgcacgaaggggaggagaaacgcaCGTactgggaaagagggaatgaAG
TCGACGGACCCCCAGGAGCAATTTGGAAACGAGAACTGCAATGACAGTGT
GGCGGACGACATGCCTCCTGAAGATTCAGCGCGGCATCGGCGAATGGTCA
TTAAGCGCAAGGAGCTGGCCGAGCTGCGGGGCATGCAGGAGAGGGAGGTC
ACTCTCTTACGCGATGCGGAGGAAAGCTTGAAGGCCACCAAGGACAAGAT
GCGGGCGGTCTATCATGACATGAGCTCGTTGGCTCCTGAGGCACAAAGAC
TCCTGCAGCGTTGTACCGAAAATTAA
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Synonyms
Publications