rna5592, rna5592 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5592
Unique Name	rna5592
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2498
Alignment location	CM002466.1:359144..360915 -

Link to JBrowse

Properties


Property Name	Value
Product	Sulfotransferase
Orig transcript id	gnl\|cribi\|Naga_100016g12.2952.mrna
Orig protein id	gnl\|cribi\|Naga_100016g12.2952
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:359144..360915 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g12	gene5404	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25143.1	cds5578	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5592	rna5592-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:359144..360915-
coding sequence from alignment at CM002466.1:359144..360915-

mRNA sequence

>rna5592 ID=rna5592|Name=rna5592|organism=Nannochloropsis gaditana|type=mRNA|length=2498bp
GCAGACATACGACGGAAAGCCTACGAAAACTTACCACCCTGCTATGTACA
GCAAGTTTTACACAAATCACACGCGCATGCCTGAAAATGTGTGCTGGGCG
CCTGTTTTGCCACCGACTCGGGGTGTGTCTTGCGAGCTCAGGGCAGACGT
TCCCCCCCTCTCGTTGCATTCTTCTATGCGGGATGCTCGCGCCTGCTCAC
GAGCACTATTACCCATTCTTCCAGTGCACTCCCTTACTGGTACGTGCTGG
CGCCGACTCACTCACGGTAATCCATGCTTCATTTTCCGACAGAGCAGTGG
GTCCAAGGGGCATGTCGGAGATTGACAGCCTGTTCAGTGCGCTCGGAGAG
ACGGGCGATGTGGACGCAGATCTGAGCATTCTGGAGGCCCTTTGTGGTCT
TGAGGGCGTTGATGCCTCTGCCGCCGCTGCCGCCGCTGTTGAAGAAGAGC
AATCGGACGATGATGAGGACGACTCTTTCGATGGAGAAGGGCAGCCGCGA
AAAAAGCGGGCACGGCGGACGCGTACAGAACTCAATGAAATTGAAAAGCA
GCGGACCCGTCGAATCAACGAGCAGATCCAGTCGTTGCGCTCTCTTCTCG
AGGCTTCAGGTTTAAACACCAAAAAGGACAAGTTTTCAATCTTAAAGAAT
ACCACGGAATACTTAAAGAAGCTTAAACTGCTTCTAAATAAATCGCAAGC
TCAAATTCAAGCGCTGGCAGCCAACCGGAGGGCAGCCGCCGCGACAGCCG
CAGCAGCTAAAGCCGCAGCAGGTGCAGCGCCCACTCAGGCCTCGACGTCC
ATCATGCCAGTATCGCCGGGAAATGCGCTGGGAGACACGAAGTACTACGT
GGAAGTAGACTCGAACGCGGGGAAAGAGAGCAGCAACGGCTCGTTGCCCT
CCGGGCCAGCTCTGGGGATGATGATCCAGCGGCCCCCCATCGCCCCCGGC
ACCCTGGTCGAGGCGGGGTCGTGGGCGCCGAACAAGAAGAGCGCCGATTA
TGCGCTCATGTTCCAGAATGCCTCCATCGCCATGGCGGTCGCCAGTCTAG
ACGGGAAATTCGTCGACTGCAACTCGGCCTTCTCCATTATATCCGGGTAT
TCGAACGGAGAAGTCCTGCAGCGCTCTGTGTTTGACTTGACCCCGGCGGA
GGACTGTCAGGAGCTGATGGGCATCGTGGGCAAGATGATGGAGTCGCCCG
CTGAGTCCGCGAAACATTTTTGGAAGCGCTGCTGCTTCGAAAACCGCGAC
TGCCACTGCTTCGTCTCCATGTGGCTGGTCCGCAAGGCTTCAGGCGAGCC
GGTCTTCTTCCAGTGCGCCGTCTTGCCTCTGGAAGACTACCCCATGGCCT
CCAAATCCGTCACTCACGACGCCTCCTCTGTCCCCGATGACGGGAACGCT
ATTGCGGGACCGGCGGGGGAGGGGGAGGGCTACCTGGCATTGGAGGATCG
TGTGGAAACCAGCGAGGCAAATGCCCTTTTGCAACCGCCACAGCAGCAAC
TCGAGCACGAGCGGCAAGAGATGCCGTGCGAGACCGAGAAACAAAGAGTC
ATGGAATCTGCACTGGACCCGGCGCTGGATTCTGGAAACGCTTATTTGCA
GGTACGCGACGACGGCGAGACCTCTCTGGACACAAAGTAGAAGGAGGCGT
TGAAGTGAAGGGGAAGAGGGCTCTGAGGCGAGGGAAGAGGACGGAGCAGA
ATTGCAAGAAGGAAGGACCCACTAGAGGATGAAGAGGAAAGATAGTCGGG
GCACATGGTCGTGCCTCACGTTTCAAGCGCCATAAAAGGGGTCTCGCCCT
CACTTTCATGTATGTATGTATAAGGAGACAAACAGGCTGCGAAAAGGCAG
TACTGATGAAAAAAGGGAGATCGAGTCTTCAACGAAAGGTATGGGTGCCA
TGGTTTAGAGAAAATTTAACCATGTCGTGACTAAAAAGCTTGAGTGGCAG
CAAGCTTCGCTGACATGAGGCCGCAAAGCCTTCCAAGGGGTCGCACCGTG
AGAAAATCATCAGACGCCCAAAGCAGATTGATGAAAAACGGGGACTTAAT
GGAGCGAAGGGTTTCATTGAAGTTTGAATGGCATCATCGAAAGTTGAACG
CTTTAATTGAAATGTAATGTGTGAAAGGAAAGACGGCGGGAAAGCTGGGC
TGGCCGTGGGCGGTGACAGGGCTGAGCGAGTGCGCGAAGGGGAGCGGTCC
ACGGCTGCTGAATAGTGAGGTGTATGGATCAGCACGCGGGTCTTGACTTG
ATGATGTATTTATTTCAATCTGTACTTGAGCATGACGGAAATTACTGCAG
GACTTGCAAGGCGACCGAGTTCCCCCTAGATGTGGGTTAGACGTCTGGAT
GCGAAGGAGGCGGGCAGTGAAGTGCGATCGCGTGGTATTTTCGCGTGCCA
TGAGGGGGTGAGGTGCTGCTACACACGAGGACCCGACATCGGGCGAGGCG
TTGTGCAGCAACGAAAGAAAAAAACACACGCAAGAATTCCTTACATGC

protein sequence of rna5592

>rna5592-protein ID=rna5592-protein|Name=rna5592|organism=Nannochloropsis gaditana|type=polypeptide|length=494bp
MGLHLTLHDCNLDLLATMVGFLNEQDRKCFAIAHSYHFLVLHTIVHCGTV
STSLSVNTPAVCVPCNASILSDDHGFNGEKAPSAGLEGLSRPRFLFPGER
GGETVALLSYPRSGNSMLRTLLEEATGIVTGSDTRPDRVLSRSLLKRGLR
GEGVVDERAWIVKSHWPERHGYRRFPAQRIILLVRNPFDAIYSYFNMGLT
NTHEERLASDVFESLAPLWEDMARNEARVWAKFNAYWLTQKLPVLVVRYE
DLLLHTEEMLVRLVSFLESTPREAIRASRSHMARIAKSAAAIRSPPIIPP
ISFSELVLDGPRGEDQGAIDSSVTSPVTPAGTHPEVPPPPSSRSPPRSHA
CPDKGNIGKSLRFFSPALVEDVARLAGGGLRAFGYDPVSQGFPHRVLSLP
LYERCVKFVDPSLLSHLPDRNIAPPAAAATAAGSALPAYSMRERRVTLNT
GTQRGVRDRADRFGRGITSVRHELTDHDRRPLRTVSAGDSGRVK

mRNA from alignment at CM002466.1:359144..360915-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5592 ID=rna5592|Name=rna5592|organism=Nannochloropsis gaditana|type=mRNA|length=1772bp|location=Sequence derived from alignment at CM002466.1:359144..360915- (Nannochloropsis gaditana)
CGAAATCCGTTTCTTTCAACACAACTCGCCTACCGTCGCACACAACCATT
TTCCATCGCAACATGAAATGACCTCAATGGCCTAAGCACGGGACAGCAAT
AACCTCCTACCCCCTATTCAAATAACGGCAAGGAGCGGGGGGAAGTATCC
ACATGCTAAACGACCTCTCTCGTCCTTGAGTAAACCTCACTCTGCAGGTA
AAAAATTACAACATTCACAGGGAAATGGGACTTCATCTTACCTTGCATGA
TTGTAACCTAGATTTGCTCGCCACGATGGTTGGGTTTCTGAATGAACAGG
ATCGGAAATGCTTCGCCATTGCCCACTCTTATCATTTCCTCGTCCTGCAC
ACCATTGTGCATTGTGGGACAGTCAGTACGTCTTTGTCGGTAAATACACC
AGCAGTGTGCGTCCCATGCAATGCCAGCATTCTCAGTGATGATCATGGGT
TCAATGGGGAAAAAGCCCCGTCTGCTGGTCTGGAAGGGTTGAGCCGTCCG
CGCTTTTTATTCCCGGGGGAGCGTGGCGGAGAAACTGTTGCACTCTTGAG
CTACCCAAGATCGGGTAACTCAATGTTACGAACGCTCTTGGAAGAGGCGA
CGGGGATTGTAACGGGCAGTGACACGCGGCCAGACCGTGTCTTGAGTCGG
AGCTTGCTCAAACGAGGCTTGCGCGGCGAAGGCGTGGTGGACGAACGAGC
ATGGATAGTGAAGAGCCACTGGCCTGAACGCCACGGCTACCGACGGTTCC
CTGCCCAACGAATCATTCTTTTGGTCCGCAACCCATTCGATGCCATCTAC
TCCTACTTCAACATGGGACTCACCAACACACATGAGGAGAGACTGGCCAG
CGACGTGTTCGAGTCGTTGGCCCCGCTCTGGGAGGACATGGCCCGCAACG
AGGCCAGGGTGTGGGCTAAATTTAACGCCTACTGGCTCACGCAAAAGTTG
CCTGTGCTGGTGGTTCGGTACGAAGACCTGCTGCTGCACACCGAGGAGAT
GCTCGTGCGCCTCGTCAGCTTCCTGGAGAGCACTCCTCGCGAGGCAATCA
GGGCCTCGCGCTCCCACATGGCCCGCATCGCCAAGAGCGCCGCTGCCATA
CGATCGCCTCCGATTATCCCGCCTATATCCTTTTCGGAGCTCGTGCTCGA
CGGGCCCCGGGGCGAGGACCAAGGTGCGATCGATTCCAGCGTCACCAGCC
CCGTCACACCAGCGGGCACACACCCCGAGGTCCCCCCGCCTCCTTCCTCT
CGTTCTCCACCACGCTCACACGCATGCCCAGACAAAGGAAACATCGGCAA
GAGTCTACGTTTTTTCTCGCCTGCCCTAGTGGAGGACGTGGCTCGACTTG
CCGGGGGCGGGCTACGCGCCTTCGGCTACGACCCTGTCTCCCAGGGGTTT
CCCCACCGCGTCCTGTCCCTGCCCCTTTACGAGCGATGCGTCAAATTTGT
GGACCCAAGCCTTCTTTCACACCTCCCCGACCGGAACATAGCCCCGCCAG
CGGCGGCTGCCACGGCTGCAGGATCAGCCCTCCCCGCCTACAGCATGAGG
GAGCGGCGCGTGACCCTGAACACGGGAACGCAGAGGGGGGTGCGCGACCG
TGCCGACCGCTTCGGTCGAGGGATCACGAGTGTACGGCATGAACTGACCG
ACCATGACCGTCGACCTTTGCGAACTGTTTCGGCAGGGGATTCCGGGAGA
GTAAAATGAAGCACGCCTGACTACTGCATGATTAGCACTTTGTTGACTGT
CGAATCGAAGACGCGCATGTAA

Coding sequence (CDS) from alignment at CM002466.1:359144..360915-

>rna5592 ID=rna5592|Name=rna5592|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002466.1:359144..360915- (Nannochloropsis gaditana)
ATGGGACTTCATCTTACCTTGCATGATTGTAACCTAGATTTGCTCGCCAC
GATGGTTGGGTTTCTGAATGAACAGGATCGGAAATGCTTCGCCATTGCCC
ACTCTTATCATTTCCTCGTCCTGCACACCATTGTGCATTGTGGGACAGTC
AGTACGTCTTTGTCGGTAAATACACCAGCAGTGTGCGTCCCATGCAATGC
CAGCATTCTCAGTGATGATCATGGGTTCAATGGGGAAAAAGCCCCGTCTG
CTGGTCTGGAAGGGTTGAGCCGTCCGCGCTTTTTATTCCCGGGGGAGCGT
GGCGGAGAAACTGTTGCACTCTTGAGCTACCCAAGATCGGGTAACTCAAT
GTTACGAACGCTCTTGGAAGAGGCGACGGGGATTGTAACGGGCAGTGACA
CGCGGCCAGACCGTGTCTTGAGTCGGAGCTTGCTCAAACGAGGCTTGCGC
GGCGAAGGCGTGGTGGACGAACGAGCATGGATAGTGAAGAGCCACTGGCC
TGAACGCCACGGCTACCGACGGTTCCCTGCCCAACGAATCATTCTTTTGG
TCCGCAACCCATTCGATGCCATCTACTCCTACTTCAACATGGGACTCACC
AACACACATGAGGAGAGACTGGCCAGCGACGTGTTCGAGTCGTTGGCCCC
GCTCTGGGAGGACATGGCCCGCAACGAGGCCAGGGTGTGGGCTAAATTTA
ACGCCTACTGGCTCACGCAAAAGTTGCCTGTGCTGGTGGTTCGGTACGAA
GACCTGCTGCTGCACACCGAGGAGATGCTCGTGCGCCTCGTCAGCTTCCT
GGAGAGCACTCCTCGCGAGGCAATCAGGGCCTCGCGCTCCCACATGGCCC
GCATCGCCAAGAGCGCCGCTGCCATACGATCGCCTCCGATTATCCCGCCT
ATATCCTTTTCGGAGCTCGTGCTCGACGGGCCCCGGGGCGAGGACCAAGG
TGCGATCGATTCCAGCGTCACCAGCCCCGTCACACCAGCGGGCACACACC
CCGAGGTCCCCCCGCCTCCTTCCTCTCGTTCTCCACCACGCTCACACGCA
TGCCCAGACAAAGGAAACATCGGCAAGAGTCTACGTTTTTTCTCGCCTGC
CCTAGTGGAGGACGTGGCTCGACTTGCCGGGGGCGGGCTACGCGCCTTCG
GCTACGACCCTGTCTCCCAGGGGTTTCCCCACCGCGTCCTGTCCCTGCCC
CTTTACGAGCGATGCGTCAAATTTGTGGACCCAAGCCTTCTTTCACACCT
CCCCGACCGGAACATAGCCCCGCCAGCGGCGGCTGCCACGGCTGCAGGAT
CAGCCCTCCCCGCCTACAGCATGAGGGAGCGGCGCGTGACCCTGAACACG
GGAACGCAGAGGGGGGTGCGCGACCGTGCCGACCGCTTCGGTCGAGGGAT
CACGAGTGTACGGCATGAACTGACCGACCATGACCGTCGACCTTTGCGAA
CTGTTTCGGCAGGGGATTCCGGGAGAGTAAAATGA

Synonyms

Publications