EWM25134.1, cds5548 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|585106772|gb|EWM25134.1| (40s ribosomal protein s8 [Nannochloropsis gaditana]) HSP 1 Score: 429.483 bits (1103), Expect = 3.739e-152 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK Sbjct: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|553196233|ref|XP_005856295.1| (small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526] >gi|422292773|gb|EKU20075.1| small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 384.8 bits (987), Expect = 8.519e-135 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG 190 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG Sbjct: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG 190
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|1072924014|ref|XP_018472694.1| (PREDICTED: 40S ribosomal protein S8-1 [Raphanus sativus]) HSP 1 Score: 275.789 bits (704), Expect = 3.792e-91 Identity = 143/213 (67.14%), Postives = 166/213 (77.93%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSE----------AEPEKKSSHVLRKLAKRKG--ELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFY 201 MGISRDS HKRR TGGK+ +RKKRK+EMGR A TKL K V +R RGGN+K+RALRL+TGN++W SE V RKTR+LDVVYNASNNELVRTKTLVKSAIVQ+DAAPF+Q++ QHYG EVG KKK AA+ +AK + E KKS+HVLRK+ R+ L+SH+E+QFASGRLLA ISSRPGQ GRADGYILEGKELEFY Sbjct: 1 MGISRDSIHKRRATGGKQKGWRKKRKYEMGRQPANTKL---SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLQHYGVEVGRKKKSAASVSAKKDGEEGEEAAAAPEETKKSNHVLRKIESRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFY 210
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|298705066|emb|CBJ28525.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 272.322 bits (695), Expect = 4.822e-90 Identity = 149/211 (70.62%), Postives = 166/211 (78.67%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209 MGISRDSRHKRR TGG+R YRKKRKFEMGRPAA TKL G KRVH VR RGGN+K+RALRL++GNF+W +E RKTRILDVVYNASNNELVRTKTLVK+AIV +DA PF+ ++E HYG +G KK K AA E E KS HV RKLAKR+ + L + L+EQ ASGR LA ISSRPGQSGR DGYILEGKELEFYQK LAKKK Sbjct: 1 MGISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKL----GHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPV---EEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 204
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|325187856|emb|CCA22399.1| (40S ribosomal protein S82 putative [Albugo laibachii Nc14]) HSP 1 Score: 271.552 bits (693), Expect = 7.892e-90 Identity = 151/211 (71.56%), Postives = 170/211 (80.57%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKR-KGEL-ESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209 MGISRDSRHKRR TGGKR YRKKRKFE+GR A TKL G KRVH VR RGG+ KFRALRLETGNF+W SE V+RKTRILDVVYNASNNELVRTKTLVKSAIV IDA PFRQ++E HYG ++G KK A + E EKKS HV+RKLA+R +G + + L+EQF SGR+LA +SSRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 1 MGISRDSRHKRRDTGGKRKQYRKKRKFELGRQPANTKL----GGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAIVSIDATPFRQWYETHYGVKIGQKKN----AETTEKVEQEKKSDHVMRKLAQRQRGRIFDPKLDEQFTSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKK 203
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|1214704166|gb|OWZ16065.1| (40S ribosomal protein S8-2 [Phytophthora megakarya]) HSP 1 Score: 268.085 bits (684), Expect = 2.396e-88 Identity = 148/211 (70.14%), Postives = 168/211 (79.62%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRK--GELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209 +GISRDSRHKRR TGGKR YRKKRKFE+GR A TKL G KRVH VR RGG+LKFRAL LETGNF+W +E ARKTRILDVVYNASNNELVRTKTLVK A+V +DA PFRQ++E HYG ++G KK K E E KKSSHVLRKLA R+ EL++ ++EQ +SGRLLA I+SRPGQSGRADGYILEGKELEFYQ++LA KK Sbjct: 12 VGISRDSRHKRRETGGKRKQYRKKRKFELGRQPAATKL----GGKRVHTVRTRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-----AEKQEEEDVKKSSHVLRKLANRQRTRELDTKIDEQVSSGRLLAVIASRPGQSGRADGYILEGKELEFYQRKLATKK 213
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|697131637|ref|XP_009619873.1| (PREDICTED: 40S ribosomal protein S8-like [Nicotiana tomentosiformis] >gi|1025072207|ref|XP_016452340.1| PREDICTED: 40S ribosomal protein S8-like [Nicotiana tabacum]) HSP 1 Score: 266.929 bits (681), Expect = 7.837e-88 Identity = 144/214 (67.29%), Postives = 174/214 (81.31%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEP---EKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209 MGISRDS HKRR TGGK+ ++RKKRK+E+GR A TKLV K V +R RGGN+K+RALRL+TGN++W SE + RKTR+LDVVYNASNNELVRT+TLVKSAIVQ+DAAPF+Q++ QHYG ++G KKK AA+ EAE EKKS+HV RKL KR+ + ++ H+EEQFASGRLLA+ISSRPGQ GRADGYILEGKELEFY K+L +KK Sbjct: 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLV--PNAKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAITRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASKKEGEEAEAVPEEKKSNHVQRKLQKRQQDRKIDPHIEEQFASGRLLAAISSRPGQCGRADGYILEGKELEFYMKKLQRKK 212
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|729328666|ref|XP_010535902.1| (PREDICTED: 40S ribosomal protein S8-1-like [Tarenaya hassleriana]) HSP 1 Score: 265.388 bits (677), Expect = 3.357e-87 Identity = 147/210 (70.00%), Postives = 167/210 (79.52%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAK-----SEAEPE--KKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFY 201 MGISRDS HKRR TGGK+ +RKKRK+E+GR AA TKL K V VR RGGN+K+RALRL+TGN++W SE V RKTRILDVVYNASNNELVRTKTLVKSAIVQ+D APF+Q++ QHYG EVG KKK AA + K +A PE KKS+HVLRKL KR+ L+SH+E+QFASGRLLA ISSRPGQ GRADGYILEGKELEFY Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYELGRVAANTKL---SSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTKTLVKSAIVQVDVAPFKQWYLQHYGVEVGRKKKTAATSGKKEGEEGEDAAPEETKKSNHVLRKLEKRQQNRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFY 207
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|702363029|ref|XP_010060252.1| (PREDICTED: 40S ribosomal protein S8 [Eucalyptus grandis] >gi|629101401|gb|KCW66870.1| hypothetical protein EUGRSUZ_F00627 [Eucalyptus grandis]) HSP 1 Score: 265.388 bits (677), Expect = 3.867e-87 Identity = 147/216 (68.06%), Postives = 175/216 (81.02%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAA-----TAKSEAEPEKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209 MGISRDS HKRR TGGK+ ++RKKRK+E+GR A TKL K V +R RGGN+K+RALRL+TGN++W SE V RKTRILDVVYNASNNELVRT+TLVKSAIVQ+DAAPF+Q++ QHYG ++G KKK A+A A++ AE KKSSHVLRKL KR+ E L+ H+EEQF+SGRLLASISSRPGQ GRADGYILEGKELEFY K++ +KK Sbjct: 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKL---SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKNQASAKKEGEEAEAPAEEVKKSSHVLRKLEKRQTERKLDQHIEEQFSSGRLLASISSRPGQCGRADGYILEGKELEFYMKKIQRKK 213
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|674239105|gb|KFK31870.1| (hypothetical protein AALP_AA6G169300 [Arabis alpina]) HSP 1 Score: 264.233 bits (674), Expect = 1.117e-86 Identity = 143/209 (68.42%), Postives = 167/209 (79.90%), Query Frame = 0 Query: 1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAK------SEAEPEKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFY 201 MGISRDS HKRR TGGK+ +RKKRK+EMGR A TKL G K V +R RGGN+K+RALRL+TGN++W SE V RKTR+LDVVYNASNNELVRTKTLVKSAIVQ+DAAPF+Q++ HYG EVG KKK A +AT K AE KKS+HVLRK+ +R+ + L+SH+E+QF+SGRLLA ISSRPGQ GRADGYILEGKELEFY Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKL---SGNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVEVGRKKKPAPSATKKEGEDVEEAAEETKKSNHVLRKIKERQEDRNLDSHIEDQFSSGRLLACISSRPGQCGRADGYILEGKELEFY 206 The following BLAST results are available for this feature:
BLAST of EWM25134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|