EWM25134.1, cds5548 (CDS) Nannochloropsis gaditana

Overview
NameEWM25134.1
Unique Namecds5548
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:292571..293212 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25134.1
Product40s ribosomal protein s8
Orig transcript idgnl|cribi|Naga_100016g46.2943.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:292571..293212 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018283Ribosomal_S8e_CS
IPR022309Ribosomal_S8e/biogenesis_NSA2
IPR001047Ribosomal_S8e
Homology
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|585106772|gb|EWM25134.1| (40s ribosomal protein s8 [Nannochloropsis gaditana])

HSP 1 Score: 429.483 bits (1103), Expect = 3.739e-152
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213
            MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK
Sbjct:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKKKGQK 213          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|553196233|ref|XP_005856295.1| (small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526] >gi|422292773|gb|EKU20075.1| small subunit ribosomal protein S8e, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 384.8 bits (987), Expect = 8.519e-135
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG 190
            MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG
Sbjct:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADG 190          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|1072924014|ref|XP_018472694.1| (PREDICTED: 40S ribosomal protein S8-1 [Raphanus sativus])

HSP 1 Score: 275.789 bits (704), Expect = 3.792e-91
Identity = 143/213 (67.14%), Postives = 166/213 (77.93%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSE----------AEPEKKSSHVLRKLAKRKG--ELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFY 201
            MGISRDS HKRR TGGK+  +RKKRK+EMGR  A TKL      K V  +R RGGN+K+RALRL+TGN++W SE V RKTR+LDVVYNASNNELVRTKTLVKSAIVQ+DAAPF+Q++ QHYG EVG KKK AA+ +AK +           E  KKS+HVLRK+  R+    L+SH+E+QFASGRLLA ISSRPGQ GRADGYILEGKELEFY
Sbjct:    1 MGISRDSIHKRRATGGKQKGWRKKRKYEMGRQPANTKL---SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLQHYGVEVGRKKKSAASVSAKKDGEEGEEAAAAPEETKKSNHVLRKIESRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFY 210          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|298705066|emb|CBJ28525.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 272.322 bits (695), Expect = 4.822e-90
Identity = 149/211 (70.62%), Postives = 166/211 (78.67%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209
            MGISRDSRHKRR TGG+R  YRKKRKFEMGRPAA TKL    G KRVH VR RGGN+K+RALRL++GNF+W +E   RKTRILDVVYNASNNELVRTKTLVK+AIV +DA PF+ ++E HYG  +G KK K AA     E E   KS HV RKLAKR+ +  L + L+EQ ASGR LA ISSRPGQSGR DGYILEGKELEFYQK LAKKK
Sbjct:    1 MGISRDSRHKRRETGGRRSKYRKKRKFEMGRPAANTKL----GHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPV---EEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 204          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|325187856|emb|CCA22399.1| (40S ribosomal protein S82 putative [Albugo laibachii Nc14])

HSP 1 Score: 271.552 bits (693), Expect = 7.892e-90
Identity = 151/211 (71.56%), Postives = 170/211 (80.57%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKR-KGEL-ESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209
            MGISRDSRHKRR TGGKR  YRKKRKFE+GR  A TKL    G KRVH VR RGG+ KFRALRLETGNF+W SE V+RKTRILDVVYNASNNELVRTKTLVKSAIV IDA PFRQ++E HYG ++G KK     A    + E EKKS HV+RKLA+R +G + +  L+EQF SGR+LA +SSRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:    1 MGISRDSRHKRRDTGGKRKQYRKKRKFELGRQPANTKL----GGKRVHRVRVRGGHFKFRALRLETGNFSWGSEAVSRKTRILDVVYNASNNELVRTKTLVKSAIVSIDATPFRQWYETHYGVKIGQKKN----AETTEKVEQEKKSDHVMRKLAQRQRGRIFDPKLDEQFTSGRILACVSSRPGQSGRADGYILEGKELEFYQRKLATKK 203          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|1214704166|gb|OWZ16065.1| (40S ribosomal protein S8-2 [Phytophthora megakarya])

HSP 1 Score: 268.085 bits (684), Expect = 2.396e-88
Identity = 148/211 (70.14%), Postives = 168/211 (79.62%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHVLRKLAKRK--GELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209
            +GISRDSRHKRR TGGKR  YRKKRKFE+GR  A TKL    G KRVH VR RGG+LKFRAL LETGNF+W +E  ARKTRILDVVYNASNNELVRTKTLVK A+V +DA PFRQ++E HYG ++G KK        K E E  KKSSHVLRKLA R+   EL++ ++EQ +SGRLLA I+SRPGQSGRADGYILEGKELEFYQ++LA KK
Sbjct:   12 VGISRDSRHKRRETGGKRKQYRKKRKFELGRQPAATKL----GGKRVHTVRTRGGHLKFRALHLETGNFSWGTEVCARKTRILDVVYNASNNELVRTKTLVKGAVVLVDATPFRQWYEAHYGVKIGVKKN-----AEKQEEEDVKKSSHVLRKLANRQRTRELDTKIDEQVSSGRLLAVIASRPGQSGRADGYILEGKELEFYQRKLATKK 213          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|697131637|ref|XP_009619873.1| (PREDICTED: 40S ribosomal protein S8-like [Nicotiana tomentosiformis] >gi|1025072207|ref|XP_016452340.1| PREDICTED: 40S ribosomal protein S8-like [Nicotiana tabacum])

HSP 1 Score: 266.929 bits (681), Expect = 7.837e-88
Identity = 144/214 (67.29%), Postives = 174/214 (81.31%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEP---EKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209
            MGISRDS HKRR TGGK+ ++RKKRK+E+GR  A TKLV     K V  +R RGGN+K+RALRL+TGN++W SE + RKTR+LDVVYNASNNELVRT+TLVKSAIVQ+DAAPF+Q++ QHYG ++G KKK AA+     EAE    EKKS+HV RKL KR+ +  ++ H+EEQFASGRLLA+ISSRPGQ GRADGYILEGKELEFY K+L +KK
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLV--PNAKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAITRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAASKKEGEEAEAVPEEKKSNHVQRKLQKRQQDRKIDPHIEEQFASGRLLAAISSRPGQCGRADGYILEGKELEFYMKKLQRKK 212          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|729328666|ref|XP_010535902.1| (PREDICTED: 40S ribosomal protein S8-1-like [Tarenaya hassleriana])

HSP 1 Score: 265.388 bits (677), Expect = 3.357e-87
Identity = 147/210 (70.00%), Postives = 167/210 (79.52%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAK-----SEAEPE--KKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFY 201
            MGISRDS HKRR TGGK+  +RKKRK+E+GR AA TKL      K V  VR RGGN+K+RALRL+TGN++W SE V RKTRILDVVYNASNNELVRTKTLVKSAIVQ+D APF+Q++ QHYG EVG KKK AA +  K      +A PE  KKS+HVLRKL KR+    L+SH+E+QFASGRLLA ISSRPGQ GRADGYILEGKELEFY
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYELGRVAANTKL---SSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTKTLVKSAIVQVDVAPFKQWYLQHYGVEVGRKKKTAATSGKKEGEEGEDAAPEETKKSNHVLRKLEKRQQNRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFY 207          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|702363029|ref|XP_010060252.1| (PREDICTED: 40S ribosomal protein S8 [Eucalyptus grandis] >gi|629101401|gb|KCW66870.1| hypothetical protein EUGRSUZ_F00627 [Eucalyptus grandis])

HSP 1 Score: 265.388 bits (677), Expect = 3.867e-87
Identity = 147/216 (68.06%), Postives = 175/216 (81.02%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAA-----TAKSEAEPEKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFYQKQLAKKK 209
            MGISRDS HKRR TGGK+ ++RKKRK+E+GR  A TKL      K V  +R RGGN+K+RALRL+TGN++W SE V RKTRILDVVYNASNNELVRT+TLVKSAIVQ+DAAPF+Q++ QHYG ++G KKK  A+A      A++ AE  KKSSHVLRKL KR+ E  L+ H+EEQF+SGRLLASISSRPGQ GRADGYILEGKELEFY K++ +KK
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKL---SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKNQASAKKEGEEAEAPAEEVKKSSHVLRKLEKRQTERKLDQHIEEQFSSGRLLASISSRPGQCGRADGYILEGKELEFYMKKIQRKK 213          
BLAST of EWM25134.1 vs. NCBI_GenBank
Match: gi|674239105|gb|KFK31870.1| (hypothetical protein AALP_AA6G169300 [Arabis alpina])

HSP 1 Score: 264.233 bits (674), Expect = 1.117e-86
Identity = 143/209 (68.42%), Postives = 167/209 (79.90%), Query Frame = 0
Query:    1 MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVVRGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTLVKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAK------SEAEPEKKSSHVLRKLAKRKGE--LESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEFY 201
            MGISRDS HKRR TGGK+  +RKKRK+EMGR  A TKL    G K V  +R RGGN+K+RALRL+TGN++W SE V RKTR+LDVVYNASNNELVRTKTLVKSAIVQ+DAAPF+Q++  HYG EVG KKK A +AT K        AE  KKS+HVLRK+ +R+ +  L+SH+E+QF+SGRLLA ISSRPGQ GRADGYILEGKELEFY
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKL---SGNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVEVGRKKKPAPSATKKEGEDVEEAAEETKKSNHVLRKIKERQEDRNLDSHIEDQFSSGRLLACISSRPGQCGRADGYILEGKELEFY 206          
The following BLAST results are available for this feature:
BLAST of EWM25134.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106772|gb|EWM25134.1|3.739e-152100.0040s ribosomal protein s8 [Nannochloropsis gaditana... [more]
gi|553196233|ref|XP_005856295.1|8.519e-135100.00small subunit ribosomal protein S8e, partial [Nann... [more]
gi|1072924014|ref|XP_018472694.1|3.792e-9167.14PREDICTED: 40S ribosomal protein S8-1 [Raphanus sa... [more]
gi|298705066|emb|CBJ28525.1|4.822e-9070.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|325187856|emb|CCA22399.1|7.892e-9071.5640S ribosomal protein S82 putative [Albugo laibach... [more]
gi|1214704166|gb|OWZ16065.1|2.396e-8870.1440S ribosomal protein S8-2 [Phytophthora megakarya... [more]
gi|697131637|ref|XP_009619873.1|7.837e-8867.29PREDICTED: 40S ribosomal protein S8-like [Nicotian... [more]
gi|729328666|ref|XP_010535902.1|3.357e-8770.00PREDICTED: 40S ribosomal protein S8-1-like [Tarena... [more]
gi|702363029|ref|XP_010060252.1|3.867e-8768.06PREDICTED: 40S ribosomal protein S8 [Eucalyptus gr... [more]
gi|674239105|gb|KFK31870.1|1.117e-8668.42hypothetical protein AALP_AA6G169300 [Arabis alpin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5562rna5562Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications