rna5562, rna5562 (mRNA) Nannochloropsis gaditana

Overview
Namerna5562
Unique Namerna5562
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1446
Alignment locationCM002466.1:292230..293528 -

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Properties
Property NameValue
Product40s ribosomal protein s8
Orig transcript idgnl|cribi|Naga_100016g46.2943.mrna
Orig protein idgnl|cribi|Naga_100016g46.2943
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:292230..293528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g46gene5375Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25134.1cds5548Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5562rna5562-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5562 ID=rna5562|Name=rna5562|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp
TGAGGCTGGCCGAGCGCTTGCCCGTGCACAGCAGGTGCGCATCAGGACGC
CTGAACAGGCGTTGTCGATATGTCAACAGTACCCACACGACCAATGCACA
GTCGCTTTTGATAGGTGAGACGGGAATCAAATCATTTTGTAACCTCCTAC
CTTTTGCTCATGATAGTCCACCTGACGAGGTTCTGCAGGCATCAACTGCA
ATAGCATTTCGACCATTGCAGCCTTTGAAACCGGTAACGACTTCACAAGC
CGAGAGGTAGAAACGAAAAAAAGCTCGCGGAGGTTCGCGCCTCTGTGTGT
CGGCTACTTCGCCTTCGCAATTTTCTTTCTTACAATGGCGGATTGCGGAG
GCAAGGCCGCAGCATCTATTCTAAGACGGAGTTTCCCTCTGAGCAATCGG
ATAAGCCTCCAGATAAGCGTCGGAGATCTGACAAAGTGCTCCGTAGACGC
AATCGTAAATGCGGCGAACGAACGCATGCTGGGTGGCGGTGGAGTGGACG
GGGCTGTGCACAGAGCTGCAGGGCCCCAATTGTACGAGGCATGTAGAGCT
GTCCCAGAGGTACGCCCAGGTGTGAGGTGCCCTACAGGGGAGGCCCGCAT
AACGCCAGGATTCAAATTGCCTGCCCGGTATGTTGTGCATACTGTCGGAC
CAATATATAAAAATGACAATGAGTCTGCGGCCTTGCTCCGCGCCAGCCAC
CTAAGTTCTCTTGATCTGGCTGTGAAACAAGGGCTGACGTCGGTGGCATT
TCCGGCCGTTTCATGCGGTATCTATGGATATCCTGTCAGCAGAGCTTCAC
ACATAGCTGTCAAATCTTGTATCGACTTTGGCGACGAACAGGGTTTGAAC
TCACCGTTACGAAACATTGAATTTGTCCTCTTCTCTCAAGACATATACAA
CGCCTGGGTCGCAGCCGCTGAGGATCTTGTCCATCGTTCCACGCGTACTT
CAGCCGAAAATGAATCTCGAGGCCGCGAGACGTCGACTTCATCTGGCTCG
GCGAGTTCTGAAGTCGATTTCGACCCGCGGACTCGCGGCGAAAAAGAAAA
ATGCGAGAACGCCGACATCTGAGACAACTTGTATATCCACAGATGTCTGC
CGGCTTGGTTTGAGGCAATAAGTGCGACAAACAGCACTTCCGTGGTCCAA
CATGTGTTTGTAAGGGAACGTCGTATCATGCAAAAAAATAAGAAAGGATG
AAATTTTCAAAAATTGTGGAATGCCAGGGTTGTGAAATCCGAGTCTGCGG
ACAAGTCCGAGAAAAAACTTGGGGAGGAAAGAATGCTACGAAGAAGCGAA
ATAAGTAGATGTTCACGGGATATAAGGATAGAAAATAGCTCAAGACAATG
AGTGCGAATTGTCACATTTTAAGAGGTACCATGTCTTGGGAGTCATCGTT
AGAAAACATGCTCTGGAAAAGCATGAAGCACTTCAGACGATACCCT
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protein sequence of rna5562

>rna5562-protein ID=rna5562-protein|Name=rna5562|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MGISRDSRHKRRHTGGKRPSYRKKRKFEMGRPAAMTKLVLGHGEKRVHVV
RGRGGNLKFRALRLETGNFAWRSETVARKTRILDVVYNASNNELVRTKTL
VKSAIVQIDAAPFRQYFEQHYGQEVGSKKKKAAAATAKSEAEPEKKSSHV
LRKLAKRKGELESHLEEQFASGRLLASISSRPGQSGRADGYILEGKELEF
YQKQLAKKKKGQK
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mRNA from alignment at CM002466.1:292230..293528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5562 ID=rna5562|Name=rna5562|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp|location=Sequence derived from alignment at CM002466.1:292230..293528- (Nannochloropsis gaditana)
CCTTGTGACGGCGGCGGATGGCTGAGAGACGGCGACACCCGGGCCAGCAT
TGCAGAAGGAGAGAGAAGGCGACGCGTCATATTCGCATGGCCACGAACTG
CGTACAAATGAACCATGCTATGAAATGAATGTGTTATGAAGTAGTATACC
ACAGCGGTCTGTTAATGCTCATTTTTGGTCCCCCAGCGTAGTGTTGCACC
GTGCGCGTTCCCACCTCCCCGCTTCGACTGATGCCTCCTTCCTGTTTATA
TCCAACCAACCATCAATTCTTCTGCTAACCAAAGCTATTTGCTCCGCTCC
CTCTTGACAAACAGTTATGGGTATTTCTCGTGACTCTCGCCACAAGCGCC
GCCACACGGGTGGAAAGCGGCCCTCATACCGTAAGAAGCGAAAGTTTGAG
ATGGGTCGCCCGGCGGCAATGACGAAATTGGTGCTGGGACATGGGGAGAA
GCGCGTACATGTTGTGAGAGGACGGGGCGGGAATCTTAAGTTCCGTGCGC
TCCGCCTGGAAACGGGCAACTTTGCCTGGCGCTCTGAGACGGTGGCGAGG
AAGACACGTATTTTGGACGTGGTCTACAACGCCTCGAACAACGAATTGGT
CCGCACCAAGACCCTGGTGAAAAGTGCCATCGTGCAAATCGATGCCGCGC
CTTTCCGACAATACTTTGAGCAGCACTACGGTCAGGAGGTGGGCAGTAAG
AAAAAGAAGGCGGCGGCCGCAACAGCAAAATCGGAGGCGGAGCCCGAGAA
GAAGTCCAGCCATGTGCTTCGCAAGCTTGCCAAGCGCAAAGGAGAGTTAG
AGTCGCACTTGGAGGAGCAATTTGCGTCGGGCCGCTTGCTCGCTTCTATT
TCTTCTCGTCCGGGTCAGAGTGGGCGCGCGGATGGTTACATTCTGGAAGG
AAAAGAGTTGGAGTTCTATCAGAAGCAGTTGGCCAAGAAGAAGAAGGGTC
AAAAGTAAGGGGCGATGGGAGTAGACGGGGCGAATGGCGTAAAAGCAGGG
CTTAGGTGTAGTGTTGCAGGCGGTTCTGCATCTTTGATAGACGCGATAGT
CCGAGAGGGCTGGGCCACGAGGGGATAGACTTCCTGGAGCTGAGGATGGA
CACGCGCAGTTTTGGGATAAGGAGGGGCGTCATGGCATCCTTGACGATTA
TGACACAAACGACAGAAGAACCAAATAAGCTCTGCCAATTAATTACGGCC
TCTAGCAAGGGTATCGTCTGAAGTGCTTCATGCTTTTCCAGAGCATGTTT
TCTAACGATGACTCCCAAGACATGGTACCTCTTAAAATGTGACAATTCG
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Coding sequence (CDS) from alignment at CM002466.1:292230..293528-

>rna5562 ID=rna5562|Name=rna5562|organism=Nannochloropsis gaditana|type=CDS|length=642bp|location=Sequence derived from alignment at CM002466.1:292230..293528- (Nannochloropsis gaditana)
ATGGGTATTTCTCGTGACTCTCGCCACAAGCGCCGCCACACGGGTGGAAA
GCGGCCCTCATACCGTAAGAAGCGAAAGTTTGAGATGGGTCGCCCGGCGG
CAATGACGAAATTGGTGCTGGGACATGGGGAGAAGCGCGTACATGTTGTG
AGAGGACGGGGCGGGAATCTTAAGTTCCGTGCGCTCCGCCTGGAAACGGG
CAACTTTGCCTGGCGCTCTGAGACGGTGGCGAGGAAGACACGTATTTTGG
ACGTGGTCTACAACGCCTCGAACAACGAATTGGTCCGCACCAAGACCCTG
GTGAAAAGTGCCATCGTGCAAATCGATGCCGCGCCTTTCCGACAATACTT
TGAGCAGCACTACGGTCAGGAGGTGGGCAGTAAGAAAAAGAAGGCGGCGG
CCGCAACAGCAAAATCGGAGGCGGAGCCCGAGAAGAAGTCCAGCCATGTG
CTTCGCAAGCTTGCCAAGCGCAAAGGAGAGTTAGAGTCGCACTTGGAGGA
GCAATTTGCGTCGGGCCGCTTGCTCGCTTCTATTTCTTCTCGTCCGGGTC
AGAGTGGGCGCGCGGATGGTTACATTCTGGAAGGAAAAGAGTTGGAGTTC
TATCAGAAGCAGTTGGCCAAGAAGAAGAAGGGTCAAAAGTAA
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Synonyms
Publications