rna5538, rna5538 (mRNA) Nannochloropsis gaditana

Overview
Namerna5538
Unique Namerna5538
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1263
Alignment locationCM002466.1:236947..237229 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g71.2907.mrna
Orig protein idgnl|cribi|Naga_100016g71.2907
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:236947..237229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g71gene5351Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5538rna5538-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25098.1cds5524Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5538 ID=rna5538|Name=rna5538|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
GACCCTTTCTGGAGGCTTCAATTAACTCTTCACGGTCTCAGTAGATGAGC
ATTTGCTCCGCGCCGTGCAGTTTGCATGCACCTGAACGGTACAACCTCCC
CGTCTGCTTAGCAGTTCTCCCTCGCCTTTTCACCTGCAAACAACTACACT
TACAGATGCATCTACCCACTTTCTTGGTTTTAATTGCTTCTTTAACGTCG
ACATCCAGCTTCATGATGACCCCGCTCAGTCGCCATGCGGCGGGTCACCT
GGTTAAGGCTGCTGTTGCCTGCCGCCCCGGGATCTCGCAGATGGCCGTCA
GGCGTGGCAGCCCGCAAATGAAGGAGCTGATCAACCGTCAGCAGCACCTG
CGCAGAGCTACCCTCGGTAGCTTGCTGGGGGGGTTTGCGCTTTTCGCATC
AGGTGGTGGTGTCGCGCGTGCAGAGGATGGCTTTGAGACCACATCCTCCG
GATTAAAATATAAGATTCTGAAGGAGGGAACAGGAGCAATCCCTGCGGCA
GGCCAATCCGTGAAGGTGCACTACACAGGATGGCTCGACGACTTCGAGAG
CCCCAAGAAGTTTGACTCTTCCTACGACCGCGGAAAGCCTCTCTCCTTCC
GTGCAGGTGTCGGACAAGTGATCGCAGGTTGGGATGAAGCATTACTGCAG
ATGAAAATCGGCGAGAAGCGGAACGTGATCATCCCCCCCGGGCTGGGGTA
TGGAGCGAGGGGAGCAGGGGGCGTGATCCCGCCCAACGCTACCTTGTACT
TCACCATGGAGCTCAAAAGCATCGGTTAGAATAGTTCTTTTGGGTTTTGG
GGTAAGTAAGAGGCGTCCGGGCTTGAAATGAGGTTGAAAGGGGATAGAGA
GCACAGAAACACAGGCAGAGTAGCAGCGCTGGGCTGCCGAGGAGAGGAGA
TGTCGAGGTTCAACTGGACAAAGACACACGAGGGAAGCGGGATAAGAACA
ATGGCCCATGCCGTGAAGGCAAATCGCTCGAGACGTTATTTTGAACCTGC
ATGAATCAAGATGGTGTCGGCTAGTAAGACCTCGCTTCCCCTGGCTTCCA
CTTTATTGAAGTAATCATGTCTTGTGTTTTAGAGCTCCCATGCATTTTTG
AACTCCCACGCAAGCTGTCCACCCTTCTAAGAAATCAAGCGTCAATTTTC
ATTTGTTGTCCCGGCTGTTTCCTAGAGCCCCAACCGGATATTTGGCAGCG
GGGATACTAGGAGGGCCCTGCCATCCCCACAGCCGACGTCGCCTCCGCCC
TGCAAATCCCTCC
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protein sequence of rna5538

>rna5538-protein ID=rna5538-protein|Name=rna5538|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MSGWCERLVQEGKRRDLQGGGDVGCGDGRALLVSPLPNIRRVDSLRGSSK
MHGSSKTQDMITSIKWKPGEARSY
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mRNA from alignment at CM002466.1:236947..237229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5538 ID=rna5538|Name=rna5538|organism=Nannochloropsis gaditana|type=mRNA|length=283bp|location=Sequence derived from alignment at CM002466.1:236947..237229- (Nannochloropsis gaditana)
ATGAGTGGATGGTGTGAGCGCTTGGTTCAAGAGGGTAAGAGGAGGGATTT
GCAGGGCGGAGGCGACGTCGGCTGTGGGGATGGCAGGGCCCTCCTAGTAT
CCCCGCTGCCAAATATCCGGTTGGGGCTCTAGGAAACAGCCGGGACAACA
AATGAAAATTGACGCTTGATTTCTTAGAAGGGTGGACAGCTTGCGTGGGA
GTTCAAAAATGCATGGGAGCTCTAAAACACAAGACATGATTACTTCAATA
AAGTGGAAGCCAGGGGAAGCGAGGTCTTACTAG
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Coding sequence (CDS) from alignment at CM002466.1:236947..237229-

>rna5538 ID=rna5538|Name=rna5538|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002466.1:236947..237229- (Nannochloropsis gaditana)
AAGGGTGGACAGCTTGCGTGGGAGTTCAAAAATGCATGGGAGCTCTAAAA
CACAAGACATGATTACTTCAATAAAGTGGAAGCCAGGGGAAGCGAGGTCT
TACTAGATGAGTGGATGGTGTGAGCGCTTGGTTCAAGAGGGTAAGAGGAG
GGATTTGCAGGGCGGAGGCGACGTCGGCTGTGGGGATGGCAGGGCCCTCC
TAGTATCCCCGCTGCCAAATATCCGAAGGGTGGACAGCTTGCGTGGGAGT
TCAAAAATGCATGGGAGCTCTAAAACACAAGACATGATTACTTCAATAAA
GTGGAAGCCAGGGGAAGCGAGGTCTTACTAGATGAGTGGATGGTGTGAGC
GCTTGGTTCAAGAGGGTAAGAGGAGGGATTTGCAGGGCGGAGGCGACGTC
GGCTGTGGGGATGGCAGGGCCCTCCTAGTATCCCCGCTGCCAAATATCCG
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Synonyms
Publications