rna5526, rna5526 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5526
Unique Name	rna5526
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1251
Alignment location	CM002466.1:201413..202987 +

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Properties


Property Name	Value
Product	ankyrin
Orig transcript id	gnl\|cribi\|Naga_100016g84.2920.mrna
Orig protein id	gnl\|cribi\|Naga_100016g84.2920
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:201413..202987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g84	gene5339	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5526	rna5526-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25111.1	cds5512	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:201413..202987+
coding sequence from alignment at CM002466.1:201413..202987+

mRNA sequence

>rna5526 ID=rna5526|Name=rna5526|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp
ATGAATGCACTACTTTGCCCTCGTTGGTGCTCAGTACGCCCCGCATGGCT
CGTCTTTCCTACCTCAGCCAGTCCTGTCCTCATTATTCGTCATGCGAGAT
CCCTTTTTCCCTTTTCTTTTGTCCTCTTAGAGACATCAATTTCCCCTCAT
GTAATCCAGGTACTCTATTTAATGCAGCGTTCACGGTCGCTCCCTATTAA
GCCGTCCTTCCGTCCCTCCCTCAGCCAGCTCCACCGCCCTCACAGCACTC
CGGGGGGTCCTTCCGACCCGTCTCTTTCAGGCATCTATGCCTGGTTTGAC
ATCCCCTACCATCATGACCACTTATCCCCACTTCCTCCCGATCCTAAGCA
CCATTTGGACGTATTTCTTTCATCCTCTGGCCCTTTCCCTCGCCGTCCAC
AGCCCGTCTTCCTCTTCGTTCACGGAGGCCTCTGGATGCGTGGAGACCGG
CGACACCCCTACCGCCCCCACCTGTACAGCAACGTCGGCCTGGCTTGTGC
TAGGGCTAATGTCGTCGGCGTGGTAATTTCGTATCGGCTCGCTCCTGCCG
TGACCGTCATGGAGCAAGTCAGGGACGTGAGGAGGGCCTTGGAGTGGACG
CACAAGGAGGTGGGGAGGTTCGGGGGAGATCCCGGGCGGATCTTCCTGGG
TGGGGTGTCAGCAGGGGCACATCTGTGTGCGACGCTGTTGACGGAAGAAA
GGAGTGAGATAAAGAATAAGGGTGTGCAAGGCTTTGTGGGTCTGTCCGGC
GTCTACAACATTGAGAGGCTCTGGCGGTTGGGAGGAGGGGGGGGAGGGGA
AGGAGAGGGAGAGAGAGGAGGAGAAGGAGGAGGGAGGGGGGGTTTGGGCC
TCTCGTCCATGATGATCCCCATGATCTTCGGGGATGATGAGACAAATTGG
CCCCGCGCGTCCCCTGTGCACGCGATACGGAGGGCGAGGAGGAGGAGGGA
GGAGGGAGGAGAGGCGGGGAGCGGGGGGAGTTCAGCTGCCTTGGAGCTGG
TACCCCTTTTGTTGCTGAATGCAGAGAGGGATTTTCATCTGAATGAAGAC
ACGGAGGAGCTGTTGAAGGAGCTAAGGGGAGGGAGGGAGGGGGGGGACGT
CGAGAGGGCGAGGGCCGTGGTCCCGGGGACAGACCACCTGTCTCTGGTCG
AGGGTTTGGGCGCGAAGCGGGGCAAGGAGGAGGAAGGAAGGGAGGGAGAA
AGATCGGTGCTAGAAGATCTCGTGTTCTCCTTCATCCACAGACATGCCTA
G

protein sequence of rna5526

>rna5526-protein ID=rna5526-protein|Name=rna5526|organism=Nannochloropsis gaditana|type=polypeptide|length=449bp
MERDREEGGTDAASGVLSLLCGLLVGPYALLVTALLSLLSRTMSAFSPRL
ARSFLPPLVLLGLGTGAASLLSPSPTSASPNVLSQEDDAVPPSLSSSPRR
RQHDQACAHLLQHLSRFKAPPSFASSPPSSSRRRRRGGAATTRRYLQQTL
PPSRERAGGREVLRAVECRDALGRSALAIAAMQGDEESVQVLIEDGYQVG
AEDVHRLTPLSYAAWKGHAAVVELLLEGGADGGHFDDFGVTPLHKAAAFG
HPRVVSMLLRGRGREECEGEAPLEADLPTGPVLAPPHYEAQSLHQTPLHL
SLRPSPALDSAVRQELVLTLLAHGASVSAQDLNGDTALHAAARLGEAPLL
WLLLVGATEEGQDRGGRSVEREAERKKAWRITNAKGETPVECLAWWKLYL
SLLFLMAGAWANKQMHRVDSIKRRVSRLPGSHISHNDYFARFAVEAIYF

mRNA from alignment at CM002466.1:201413..202987+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5526 ID=rna5526|Name=rna5526|organism=Nannochloropsis gaditana|type=mRNA|length=1575bp|location=Sequence derived from alignment at CM002466.1:201413..202987+ (Nannochloropsis gaditana)
atggagcgagacagagaggaaggcggtgggacGGGCGTGCAGTCTTCTCC
AACCTGTCTTTGACACCGGCGTTCTCGTCTCCGGCCGCGCGCTTGCTTGA
CGCCCGTCCTAGAGTCCCCGACCCGCGGCCCCTGAGCCCTCCCGCGATGT
CCCCTCGGGCCACTCCCTCATCGCCTTATTCCCCTCACGCCCACAGGGAC
TGATGCGGCCTCAGGCGTCCTTTCTCTCCTGTGTGGCCTTCTTGTAGGCC
CCTACGCCCTGCTGGTGACagctcttctctctctcctgtcAAGGACGATG
AGCGCCTTCAGCCCCCGTctcgctcgctccttcctcccccctctcgtcct
cctgggcctcggCACTGGCGCTGCTTCactgctttctccttcccccacat
CCGCGTCCCCCAACGTCTTGTCacaggaggacgacgcggtgcccccctcc
ctctcctcctctccccggcgCCGCCAGCACGACCAAGCCTGTGCTCACCT
CCTTCAACACCTTTCGCGCTTCaaggcccctccctccttcgcttcctccc
ccccgtcctcctcccgccgtcgccgtcgtGGTGGTGCCGCTACGACCCGC
CGTTACCTGCAgcagaccctccctccttcccgggagcgggcaggcgggag
ggaggttctTAGGGCGGTGGAATGTCGAGACGCCTTGGGCCGCTCCGCCC
TGGCGATCGCGGCCATGCagggcgacgaggagagcgTGCAGGTGCTGATA
GAGGACGGGTATCAggtcggggcggaggacgtgcacCGACTCACCCCTCT
CTCGTACGCGGCCTGGAAAGGGCATGCGGCTGTGGTGGAGCTCctgctgg
agggaggcgcagacGGCGGGCATTTCGACGACTTCGGGGTAACGCCACTC
CACAAGGCAGCGGCCTTCGGGCACCCCCGTGTGGTGAGCATGCTCttgcg
ggggaggggtcgggaGGAATGTGAAGGGGAAGCGCCCCTGGAGGCGGACC
TGCCCACGGGTCCGGTCCTCGCGCCTCCGCACTACGAAGCCCAGAGCCTC
CACCAGACTCCGcttcatctttccctccgcccctctccaGCCCTCGACTC
TGCCGTCCGCCAAGAGCTTGTGTTGACCCTGCTGGCGCACGGGGCCTCTG
TGAGCGCGCAGGACCTAAATGGGGACACCGCCTTGCACGCCGCTGCGCGA
CTCGGGGAGGCGCCGCTcttgtggctgctgctggttgGGGCAacagagga
agggcaagacaggggagggaggagcgtggaaagagaagcagaaaggaaga
aggcgtggaGGATCACAAATGCGAAGGGAGAGACGCCTGTCGAGTGCTTA
GCGTGGTGGAAGCTGTACCTTAGCCTTCTGTTTCTGATGGCGGGTGCATG
GGGTTAGTGCACGTAATGTCAAGACTAGGACTGGACTTTGGATCGGGTGA
TATAAGCAAATAAACAAATGCATCGTGTCGACAGTATCAAAAGGCGTGTG
TCTAGGTTGCCAGGCTCACATATCTCTCACAATGATTATTTCGCGCGTTT
CGCCGTGGAAGCGATCTATTTTTAG

Coding sequence (CDS) from alignment at CM002466.1:201413..202987+

>rna5526 ID=rna5526|Name=rna5526|organism=Nannochloropsis gaditana|type=CDS|length=4050bp|location=Sequence derived from alignment at CM002466.1:201413..202987+ (Nannochloropsis gaditana)
atggagcgagacagagaggaaggcgGGACTGATGCGGCCTCAGGCGTCCT
TTCTCTCCTGTGTGGCCTTCTTGTAGGCCCCTACGCCCTGCTGGTGACag
ctcttctctctctcctgtcAAGGACGATGAGCGCCTTCAGCCCCCGTctc
gctcgctccttcctcccccctctcgtcctcctgggcctcggCACTGGCGC
TGCTTCactgctttctccttcccccacatCCGCGTCCCCCAACGTCTTGT
CacaggaggacgacgcggtgcccccctccctctcctcctctccccggcgC
CGCCAGCACGACCAAGCCTGTGCTCACCTCCTTCAACACCTTTCGCGCTT
Caaggcccctccctccttcgcttcctcccccccgtcctcctcccgccgtc
gccgtcgtGGTGGTGCCGCTACGACCCGCCGTTACCTGCAgcagaccctc
cctccttcccgggagcgggcaggcgggagggaggttctTAGGGCGGTGGA
ATGTCGAGACGCCTTGGGCCGCTCCGCCCTGGCGATCGCGGCCATGCagg
gcgacgaggagagcgTGCAGGTGCTGATAGAGGACGGGTATCAggtcggg
gcggaggacgtgcacCGACTCACCCCTCTCTCGTACGCGGCCTGGAAAGG
GCATGCGGCTGTGGTGGAGCTCctgctggagggaggcgcagacGGCGGGC
ATTTCGACGACTTCGGGGTAACGCCACTCCACAAGGCAGCGGCCTTCGGG
CACCCCCGTGTGGTGAGCATGCTCttgcgggggaggggtcgggaGGAATG
TGAAGGGGAAGCGCCCCTGGAGGCGGACCTGCCCACGGGTCCGGTCCTCG
CGCCTCCGCACTACGAAGCCCAGAGCCTCCACCAGACTCCGcttcatctt
tccctccgcccctctccaGCCCTCGACTCTGCCGTCCGCCAAGAGCTTGT
GTTGACCCTGCTGGCGCACGGGGCCTCTGTGAGCGCGCAGGACCTAAATG
GGGACACCGCCTTGCACGCCGCTGCGCGACTCGGGGAGGCGCCGCTcttg
tggctgctgctggttgGGGCAacagaggaagggcaagacaggggagggag
gagcgtggaaagagaagcagaaaggaagaaggcgtggaGGATCACAAATG
CGAAGGGAGAGACGCCTGTCGAGTGCTTAGCGTGGTGGAAGCTGTACCTT
AGCCTTCTGTTTCTGATGGCGGGTGCATGGGCAAATAAACAAATGCATCG
TGTCGACAGTATCAAAAGGCGTGTGTCTAGGTTGCCAGGCTCACATATCT
CTCACAATGATTATTTCGCGCGTTTCGCCGTGGAAGCGATCTATTTTTAG
atggagcgagacagagaggaaggcgGGACTGATGCGGCCTCAGGCGTCCT
TTCTCTCCTGTGTGGCCTTCTTGTAGGCCCCTACGCCCTGCTGGTGACag
ctcttctctctctcctgtcAAGGACGATGAGCGCCTTCAGCCCCCGTctc
gctcgctccttcctcccccctctcgtcctcctgggcctcggCACTGGCGC
TGCTTCactgctttctccttcccccacatCCGCGTCCCCCAACGTCTTGT
CacaggaggacgacgcggtgcccccctccctctcctcctctccccggcgC
CGCCAGCACGACCAAGCCTGTGCTCACCTCCTTCAACACCTTTCGCGCTT
Caaggcccctccctccttcgcttcctcccccccgtcctcctcccgccgtc
gccgtcgtGGTGGTGCCGCTACGACCCGCCGTTACCTGCAgcagaccctc
cctccttcccgggagcgggcaggcgggagggaggttctTAGGGCGGTGGA
ATGTCGAGACGCCTTGGGCCGCTCCGCCCTGGCGATCGCGGCCATGCagg
gcgacgaggagagcgTGCAGGTGCTGATAGAGGACGGGTATCAggtcggg
gcggaggacgtgcacCGACTCACCCCTCTCTCGTACGCGGCCTGGAAAGG
GCATGCGGCTGTGGTGGAGCTCctgctggagggaggcgcagacGGCGGGC
ATTTCGACGACTTCGGGGTAACGCCACTCCACAAGGCAGCGGCCTTCGGG
CACCCCCGTGTGGTGAGCATGCTCttgcgggggaggggtcgggaGGAATG
TGAAGGGGAAGCGCCCCTGGAGGCGGACCTGCCCACGGGTCCGGTCCTCG
CGCCTCCGCACTACGAAGCCCAGAGCCTCCACCAGACTCCGcttcatctt
tccctccgcccctctccaGCCCTCGACTCTGCCGTCCGCCAAGAGCTTGT
GTTGACCCTGCTGGCGCACGGGGCCTCTGTGAGCGCGCAGGACCTAAATG
GGGACACCGCCTTGCACGCCGCTGCGCGACTCGGGGAGGCGCCGCTcttg
tggctgctgctggttgGGGCAacagaggaagggcaagacaggggagggag
gagcgtggaaagagaagcagaaaggaagaaggcgtggaGGATCACAAATG
CGAAGGGAGAGACGCCTGTCGAGTGCTTAGCGTGGTGGAAGCTGTACCTT
AGCCTTCTGTTTCTGATGGCGGGTGCATGGGCAAATAAACAAATGCATCG
TGTCGACAGTATCAAAAGGCGTGTGTCTAGGTTGCCAGGCTCACATATCT
CTCACAATGATTATTTCGCGCGTTTCGCCGTGGAAGCGATCTATTTTTAG
atggagcgagacagagaggaaggcgGGACTGATGCGGCCTCAGGCGTCCT
TTCTCTCCTGTGTGGCCTTCTTGTAGGCCCCTACGCCCTGCTGGTGACag
ctcttctctctctcctgtcAAGGACGATGAGCGCCTTCAGCCCCCGTctc
gctcgctccttcctcccccctctcgtcctcctgggcctcggCACTGGCGC
TGCTTCactgctttctccttcccccacatCCGCGTCCCCCAACGTCTTGT
CacaggaggacgacgcggtgcccccctccctctcctcctctccccggcgC
CGCCAGCACGACCAAGCCTGTGCTCACCTCCTTCAACACCTTTCGCGCTT
Caaggcccctccctccttcgcttcctcccccccgtcctcctcccgccgtc
gccgtcgtGGTGGTGCCGCTACGACCCGCCGTTACCTGCAgcagaccctc
cctccttcccgggagcgggcaggcgggagggaggttctTAGGGCGGTGGA
ATGTCGAGACGCCTTGGGCCGCTCCGCCCTGGCGATCGCGGCCATGCagg
gcgacgaggagagcgTGCAGGTGCTGATAGAGGACGGGTATCAggtcggg
gcggaggacgtgcacCGACTCACCCCTCTCTCGTACGCGGCCTGGAAAGG
GCATGCGGCTGTGGTGGAGCTCctgctggagggaggcgcagacGGCGGGC
ATTTCGACGACTTCGGGGTAACGCCACTCCACAAGGCAGCGGCCTTCGGG
CACCCCCGTGTGGTGAGCATGCTCttgcgggggaggggtcgggaGGAATG
TGAAGGGGAAGCGCCCCTGGAGGCGGACCTGCCCACGGGTCCGGTCCTCG
CGCCTCCGCACTACGAAGCCCAGAGCCTCCACCAGACTCCGcttcatctt
tccctccgcccctctccaGCCCTCGACTCTGCCGTCCGCCAAGAGCTTGT
GTTGACCCTGCTGGCGCACGGGGCCTCTGTGAGCGCGCAGGACCTAAATG
GGGACACCGCCTTGCACGCCGCTGCGCGACTCGGGGAGGCGCCGCTcttg
tggctgctgctggttgGGGCAacagaggaagggcaagacaggggagggag
gagcgtggaaagagaagcagaaaggaagaaggcgtggaGGATCACAAATG
CGAAGGGAGAGACGCCTGTCGAGTGCTTAGCGTGGTGGAAGCTGTACCTT
AGCCTTCTGTTTCTGATGGCGGGTGCATGGGCAAATAAACAAATGCATCG
TGTCGACAGTATCAAAAGGCGTGTGTCTAGGTTGCCAGGCTCACATATCT
CTCACAATGATTATTTCGCGCGTTTCGCCGTGGAAGCGATCTATTTTTAG

Synonyms

Publications