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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101263g2.1214.mrna |
| Orig protein id | gnl|cribi|Naga_101263g2.1214 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:192608..194067 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5522 ID=rna5522|Name=rna5522|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
ATGCTGAGTTACCTGATAGCTTTTCTACTTTTCCTGCTTGGGCTCAAGCT
CTGGGAAATGCACCAAGACAATCCTTCCAGAGAGCAAGCAAAGGCACACA
TATGTCACAAGAAGAAAAAGAAAGGAGCCAAGGCGGATGAGATGCCTAGT
GCTGGTGCAGGTGGTTCCAACTCCTCCACTAGGACAGCGAAGATCACGGC
GGGGCATTACACCAAAGGGGGCGAAGCCGCCATCTGCGTGGATGCTACCC
AGCGGGAGTCATCCCTTCCCTCGACCACAGTTGTGAAGCTCTCTTCGACT
GCAAAGCTGCGGAAAGTGAAGCGAAAAGGAACAGCCGAATCACAATCGAA
AGAGGAAGTGTCCGAGAGCAGGAATGGGAAGCTTTCTTGTGAAAACGGCG
CCTCGGAAGCGACGGGTCCTACCATGGGCTCCCCGACAAATTCAGCGAAA
CGGAAACACGGGAGGCAAAAACATGCAGACGACGGGGAGCAGGGCCAGGA
AAGTCAGGGCTCCTCTACGGGCTTGTGGAGCGATTTGATTGCGGCCGCGG
CGGTCCCTCCCAAGGACCTATCCACAGAGGCACGAGAATCAACACGTGTA
CCAGCAGACACTGGACAATCTTTGGCACAAAAAACCGAGGAGGAGGAGCG
GCGACGACGTCGGGAGCGGAGAAAGCGCCGGAAGAAAGAGAAGGAAAATG
TGGAGGCGGAGCTGGATCCTTGGGCGGCCTTTGCCTCTGCCCTTTTAGAG
GCGGAGATCCCTCAGGGCGCCTACAACGCCGGATCCGTCCCCGGTGGAAT
TTTGCTGCGTCGATCCCTGGAGGAGAAGCCGAGGAAGAGGAAAGGGAAGC
CGGGAAGGCGGCCGGGAACGTTGGGAGCGAGAGCAGCGGGAGCTGGAGGC
ATATTGGGGTCGGGAAGGGGGGAATACACAAGAGCATGA back to topprotein sequence of rna5522 >rna5522-protein ID=rna5522-protein|Name=rna5522|organism=Nannochloropsis gaditana|type=polypeptide|length=399bp
SPTLLGPSPSYPPESHSRSSSSGTFHKTVPATGASLPLGTCPASSSKLEH
LVIPACLQSPPAPTPLSPARLPLREMYAFLRQRELSWLRSLPPPYQAALD
HGHSGQSFCAHHLTHSGRLLLCLLNLAPCVPIPSHEMWKEDQASALQSSY
TEELAFFVLKPWMEKFGLGEEGFRLSALPRVREGKEGEGEKERMEGGWCF
WNVKHPKANLVATLVLGEEGKAEGTMEEALGLPTLPPSAVSSRETVDCLY
NATDVGPYAHPEYPRLHICCVPLLTFSCHPTTAEATGAHFRKCADACWSL
LGLKLSLDIGFCQRWETRALASLLAVAFPQLAEDPMALDKLMGEERRARG
RREGAEIEVWGWLRDKVPVIVAEIRNMKTEGGGKDQGKGKKEGSIMVLP back to topmRNA from alignment at CM002466.1:192608..194067+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5522 ID=rna5522|Name=rna5522|organism=Nannochloropsis gaditana|type=mRNA|length=1460bp|location=Sequence derived from alignment at CM002466.1:192608..194067+ (Nannochloropsis gaditana)
TCGCCGACGTTGTTGGGGCCGagcccctcctaccctcccgAGAGCcacag
ccgcagcagcagcagtggcacTTTCCACAAGACGGTGCCTGCGACGGGGg
cgtctcttcccctcgGGACCTGCCCTGCGAGTTCTTCCAAGTTGGAGCAT
TTGGTCATTCCCGCCTGCCTACagtctccccccgcccccaccccgctctc
ccccgcgcgcctgcccctccgagAGATGtacgctttcctccgccagcgGG
AACTGAGCTGGTTgcgctcgcttcctcccccttaccAAGCGGCCTTGGAC
CATGGGCACAGCGGGCAATCCTTCTGCGCGCACCACCTCACCCACTCggg
ccgtctcctcctctgcttgcTCAATCTGGCCCCCTGTGTGCCGATCCCCT
CTCACGAGATGTGGAAAGAGGACCAGGCGTCGGCCCTGCAGTCCTCATAT
ACGGAGGAACTGgctttcttcgtcctcaAACCGTGGATGGAGAAATTCgg
cctgggcgaggagggcttcAGGCTGAGTGCCCTTCCCAGGgtaagggaag
ggaaggagggagagggagaaaaagagaggatggaagggggatggtgCTTC
TGGAACGTGAAGCATCCAAAGGCCAATTTGGTCGCAACTCTGGTActagg
agaagagggcaaagCGGAGGGTAcgatggaggaagcgctGGGCTtgccta
ccctccctccctccgccgttTCCTCCCGAGAAACGGTTGACTGTCTATAT
AACGCCACAGATGTGGGCCCGTATGCGCATCCAGAATATCCGCGCTTGCA
TATCTGCTGcgtgcccctcctcaccttctcaTGCCATCCCACCACGGCCG
AGGCCACGGGGGCGCACTTTCGGAAGTGCGCCGACGCCTGTTGGTCCCTC
TTGGGGCTGAAGCTCTCCCTGGACATCGGCTTCTGTCAACGCTGGGAGAC
GCGTGCCCTAGCATCCCTGCTCGCGGTCGCTTTCCCACAGCTTGCGGAAG
ATCCGATGGCGCTCGATAAACTGATGGGAGAGGAGCGGAgggccagggga
aggagagagggcgcagAGATAGAGGTTTGGGGTTGGCTACGGGATAAGGT
GCCTGTAATTGTAGCCGAGATAAGAAATATGAagacagaggggggaggaa
aggatcaaggcaaagggaaaaaggagggatcCATCATGGTATTACCATGA
CAGGTTTTGCTTGCAAGGGTGAGAAGAAtggatgggatggagggatgggg
agggcgcAATGAAGAtgcgaagggagaggaacgcCTGGGTCGTGCAAGTA
CGCGGAACGAGGACACATCTTGCAATAAGAACGTTCATTGTAGACGTTGA
TATTTATAAATGGACCACGGATTAAATCGGGCCAGCACATGCCTATGGTT
CCACAAAAGTGTTCAAATAACGACGTGTAAAGAAACAAACAATTGAAGAG
GATggcacac back to topCoding sequence (CDS) from alignment at CM002466.1:192608..194067+ >rna5522 ID=rna5522|Name=rna5522|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at CM002466.1:192608..194067+ (Nannochloropsis gaditana)
TCGCCGACGTTGTTGGGGCCGagcccctcctaccctcccgAGAGCcacag
ccgcagcagcagcagtggcacTTTCCACAAGACGGTGCCTGCGACGGGGg
cgtctcttcccctcgGGACCTGCCCTGCGAGTTCTTCCAAGTTGGAGCAT
TTGGTCATTCCCGCCTGCCTACagtctccccccgcccccaccccgctctc
ccccgcgcgcctgcccctccgagAGATGtacgctttcctccgccagcgGG
AACTGAGCTGGTTgcgctcgcttcctcccccttaccAAGCGGCCTTGGAC
CATGGGCACAGCGGGCAATCCTTCTGCGCGCACCACCTCACCCACTCggg
ccgtctcctcctctgcttgcTCAATCTGGCCCCCTGTGTGCCGATCCCCT
CTCACGAGATGTGGAAAGAGGACCAGGCGTCGGCCCTGCAGTCCTCATAT
ACGGAGGAACTGgctttcttcgtcctcaAACCGTGGATGGAGAAATTCgg
cctgggcgaggagggcttcAGGCTGAGTGCCCTTCCCAGGgtaagggaag
ggaaggagggagagggagaaaaagagaggatggaagggggatggtgCTTC
TGGAACGTGAAGCATCCAAAGGCCAATTTGGTCGCAACTCTGGTActagg
agaagagggcaaagCGGAGGGTAcgatggaggaagcgctGGGCTtgccta
ccctccctccctccgccgttTCCTCCCGAGAAACGGTTGACTGTCTATAT
AACGCCACAGATGTGGGCCCGTATGCGCATCCAGAATATCCGCGCTTGCA
TATCTGCTGcgtgcccctcctcaccttctcaTGCCATCCCACCACGGCCG
AGGCCACGGGGGCGCACTTTCGGAAGTGCGCCGACGCCTGTTGGTCCCTC
TTGGGGCTGAAGCTCTCCCTGGACATCGGCTTCTGTCAACGCTGGGAGAC
GCGTGCCCTAGCATCCCTGCTCGCGGTCGCTTTCCCACAGCTTGCGGAAG
ATCCGATGGCGCTCGATAAACTGATGGGAGAGGAGCGGAgggccagggga
aggagagagggcgcagAGATAGAGGTTTGGGGTTGGCTACGGGATAAGGT
GCCTGTAATTGTAGCCGAGATAAGAAATATGAagacagaggggggaggaa
aggatcaaggcaaagggaaaaaggagggatcCATCATGGTATTACCATGA back to top
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