rna5495, rna5495 (mRNA) Nannochloropsis gaditana

Overview
Namerna5495
Unique Namerna5495
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length240
Alignment locationCM002466.1:96611..97735 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100146g1.3713.mrna
Orig protein idgnl|cribi|Naga_100146g1.3713
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:96611..97735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100146g1gene5307Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25185.1cds5481Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5495rna5495-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5495 ID=rna5495|Name=rna5495|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGATCACGCTCGCCACTCCGTACAACGCATTGGCGTTTCAAAAAACCGT
TGAATCGTGGGCGGACCCTATCATTCTTCAGGAGATGGAAGGAGGTAGTA
CCGGCGCACCTTCCCTTCAATATGGACTCCCTCTGGGAATGGATCGTGTG
CTATGTACGCGCTCTGGCCCACAAGCACGAAGAGAAGAAAGCACTCGTCA
TGCCCGACCTGGTGTGTTTCTCGGCCTTCCTCTCGCATGA
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protein sequence of rna5495

>rna5495-protein ID=rna5495-protein|Name=rna5495|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MHTGISKPARARRRRTSTSPPPSSFLPPNRAKPSSFLLLILSFCISCTSA
AKSNLGLQQSRPSGSSGIVKPNIGPRSSTFLPPPWFTFTSATLRTKHSSC
PPSPWYLKLPTLCLWLLPPSTTRQHHLAPPLCTPSLTPPPGPSPLSLNVS
SGNTTGSLPLPSKKDLRKPAGREDADTVPFLASASLVDRILALRQVREAA
ARPPSTSSSPLPPPPAPPLPSPKPANTKPGPSRRFGTGVGIPTGWKGPSG
GIGGRTGVFVPSTGSLFLPGFDPQAGREGG
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mRNA from alignment at CM002466.1:96611..97735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5495 ID=rna5495|Name=rna5495|organism=Nannochloropsis gaditana|type=mRNA|length=1125bp|location=Sequence derived from alignment at CM002466.1:96611..97735- (Nannochloropsis gaditana)
AACAATCTAATGAGCTACGATGCAGGCAACATTCACAAGCTTCGAAAGGA
AGAGTTGATAGGAAAACAATGGGCAGAAGCGCCGCCTACCTAGCGCCGTT
GGCTTGAAAGGGGTACACTTTGTGTAATCTGCAATCGAGCTATAAAGCGC
CGGTGTCTGATGCTCCCTGCCTCTATTCCCATTACTTCTTGTCTAACACA
GGATAAGATTTAAAGCTGGAGGGTTTCAACCGTGTCTACCATCGCGAGAG
CTACCATCAAAGCATTTGACGTCTTTCATTTGCATGCACACGGGGATTTC
TAAACCAGCGCGAGCACGTAGAAGAAGGACATCAACTTCGCCACCGCCCT
CCTCTTTCCTGCCTCCCAACCGGGCCAAACCCTCCTCTTTTCTATTGCTG
ATCCTATCCTTCTGTATATCTTGCACCTCCGCAGCAAAATCTAACCTGGG
ACTGCAGCAGAGCCGACCAAGTGGCAGCAGTGGCATTGTCAAGCCCAATA
TTGGCCCCCGTAGCTCGACTTTCCTCCCCCCTCCTTGGTTTACCTTCACC
TCTGCTACGCTCAGAACCAAACATTCATCCTGCCCACCGTCCCCGTGGTA
TTTAAAGCTACCGACGCTCTGCCTCTGGTTGCTGCCTCCGTCCACGACTC
GGCAGCACCATCTCGCCCCTCCCCTTTGCACGCCCTCTCTGACTCCCCCC
CCAGGCCCTTCCCCCCTTTCCTTGAACGTTTCCTCCGGAAACACCACCGG
AAGCCTTCCCCTTCCTTCGAAGAAGGATTTGAGAAAGCCAGCAGGCCGGG
AAGACGCGGACACGGTGCCCTTTTTGGCCTCCGCCTCTCTTGTCGACCGC
ATCCTCGCCTTGCGTCAAGTCCGGGAGGCTGCCGCCCGCCCTCCCTCTAC
CTCGTCCTCCCCCCTTCCTCCTCCACCAGCCCCCCCCCTCCCTTCTCCCA
AGCCAGCAAACACCAAACCGGGCCCATCGCGTCGCTTCGGCACGGGCGTG
GGCATCCCCACGGGGTGGAAAGGACCCTCCGGGGGGATAGGAGGACGTAC
AGGGGTCTTTGTACCCTCCACAGGCAGCTTGTTCTTGCCGGGATTCGATC
CACAGGCTGGTAGGGAGGGAGGGAG
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Coding sequence (CDS) from alignment at CM002466.1:96611..97735-

>rna5495 ID=rna5495|Name=rna5495|organism=Nannochloropsis gaditana|type=CDS|length=842bp|location=Sequence derived from alignment at CM002466.1:96611..97735- (Nannochloropsis gaditana)
ATGCACACGGGGATTTCTAAACCAGCGCGAGCACGTAGAAGAAGGACATC
AACTTCGCCACCGCCCTCCTCTTTCCTGCCTCCCAACCGGGCCAAACCCT
CCTCTTTTCTATTGCTGATCCTATCCTTCTGTATATCTTGCACCTCCGCA
GCAAAATCTAACCTGGGACTGCAGCAGAGCCGACCAAGTGGCAGCAGTGG
CATTGTCAAGCCCAATATTGGCCCCCGTAGCTCGACTTTCCTCCCCCCTC
CTTGGTTTACCTTCACCTCTGCTACGCTCAGAACCAAACATTCATCCTGC
CCACCGTCCCCGTGGTATTTAAAGCTACCGACGCTCTGCCTCTGGTTGCT
GCCTCCGTCCACGACTCGGCAGCACCATCTCGCCCCTCCCCTTTGCACGC
CCTCTCTGACTCCCCCCCCAGGCCCTTCCCCCCTTTCCTTGAACGTTTCC
TCCGGAAACACCACCGGAAGCCTTCCCCTTCCTTCGAAGAAGGATTTGAG
AAAGCCAGCAGGCCGGGAAGACGCGGACACGGTGCCCTTTTTGGCCTCCG
CCTCTCTTGTCGACCGCATCCTCGCCTTGCGTCAAGTCCGGGAGGCTGCC
GCCCGCCCTCCCTCTACCTCGTCCTCCCCCCTTCCTCCTCCACCAGCCCC
CCCCCTCCCTTCTCCCAAGCCAGCAAACACCAAACCGGGCCCATCGCGTC
GCTTCGGCACGGGCGTGGGCATCCCCACGGGGTGGAAAGGACCCTCCGGG
GGGATAGGAGGACGTACAGGGGTCTTTGTACCCTCCACAGGCAGCTTGTT
CTTGCCGGGATTCGATCCACAGGCTGGTAGGGAGGGAGGGAG
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Synonyms
Publications