EWM25206.1, cds5466 (CDS) Nannochloropsis gaditana

Overview
NameEWM25206.1
Unique Namecds5466
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:55433..56097 -
Alignment locationCM002466.1:55008..55180 -
Alignment locationCM002466.1:54412..54697 -
Alignment locationCM002466.1:54067..54244 -
Alignment locationCM002466.1:53833..53933 -
Alignment locationCM002466.1:53382..53589 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25206.1
Productribosomal rna methyltransferase
Orig transcript idgnl|cribi|Naga_100311g3.1356.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:55433..56097 -
CM002466.1supercontigCM002466.1:55008..55180 -
CM002466.1supercontigCM002466.1:54412..54697 -
CM002466.1supercontigCM002466.1:54067..54244 -
CM002466.1supercontigCM002466.1:53833..53933 -
CM002466.1supercontigCM002466.1:53382..53589 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0032259methylation
Vocabulary: INTERPRO
TermDefinition
IPR002877rRNA_MeTrfase_FtsJ_dom
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|585106883|gb|EWM25206.1| (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 1100.12 bits (2844), Expect = 0.000e+0
Identity = 536/536 (100.00%), Postives = 536/536 (100.00%), Query Frame = 0
Query:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVITWVHRRKSRPPV 536
            MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVITWVHRRKSRPPV
Sbjct:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVITWVHRRKSRPPV 536          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|585106884|gb|EWM25207.1| (ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYL 374
            MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYL
Sbjct:    1 MTLLLPPNATLHRKLQHVKPDNGHPEHQQSTPYGHFGIRITKADSAAINSTQPIVLTPLFPFVWACEVGQSQVHRLLSYLPTASFPSTINDARINVLTHDNPTSSPGFLAPSCSFGAVPASNAGSMPSSPPDLAPIPRTNLRKSNRIEQSTPPLAGCIADRSHRHASCLLGANYRLDDPALIPLVHRRYITRFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYL 374          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|553192214|ref|XP_005855534.1| (ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422293528|gb|EKU20828.1| ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 257.684 bits (657), Expect = 5.280e-81
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:  345 MEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGAR 468
            MEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGAR
Sbjct:    1 MEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGAR 124          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|669140732|ref|XP_008605934.1| (hypothetical protein SDRG_02141 [Saprolegnia diclina VS20] >gi|530742848|gb|EQC41090.1| hypothetical protein SDRG_02141 [Saprolegnia diclina VS20])

HSP 1 Score: 116.316 bits (290), Expect = 3.945e-25
Identity = 96/346 (27.75%), Postives = 154/346 (44.51%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASL---HPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVIT-WVHRRKSR 533
            R ++V   CRD GW+ +S  +           +RS   ++ A+P +++  +  +L            E  ++    + +H LH VH    + +F +G+             P   ++  P + + P          RAY K+            E  +++  +    +A+D+GASPGGWT++LS   + VVAVD   L   HP       NV HVP  +  E A + +     FH+   DIN+ PQ  A LI   V PH+  HA+V+LTLK  ++PT A + +A+RD+  +                       D+ E  R+ WLHAN+ +ERT+   W+   K R
Sbjct:   63 RVYHVDATCRDPGWILYSAAMLS---------TRSETFRVIAYPSSLQTGLVALL-----------AEHGIATDPKRYTHELHAVHD---ATVFRFGVV------------PRRVVAEAPLADDVP---------CRAYHKL-----------AEALLDQTPFPTGYRAIDIGASPGGWTEFLSSAGATVVAVDPGELIVTHP-------NVLHVPLLL--EHALDQISAMDKFHVCVCDINIRPQLMASLIAS-VAPHLHPHAIVVLTLKLSKRPTDAAVDQAIRDVCHVLG---------------------DEFEHFRIEWLHANTINERTLFALWICVTKRR 322          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|669140734|ref|XP_008605935.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530742849|gb|EQC41091.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 115.161 bits (287), Expect = 7.469e-25
Identity = 93/335 (27.76%), Postives = 150/335 (44.78%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASL---HPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTV 523
            R ++V   CRD GW+ +S  +           +RS   ++ A+P +++  +  +L            E  ++    + +H LH VH    + +F +G+             P   ++  P + + P          RAY K+            E  +++  +    +A+D+GASPGGWT++LS   + VVAVD   L   HP       NV HVP  +  E A + +     FH+   DIN+ PQ  A LI   V PH+  HA+V+LTLK  ++PT A + +A+RD+  +                       D+ E  R+ WLHAN+ +ERT+
Sbjct:   63 RVYHVDATCRDPGWILYSAAMLS---------TRSETFRVIAYPSSLQTGLVALL-----------AEHGIATDPKRYTHELHAVHD---ATVFRFGVV------------PRRVVAEAPLADDVP---------CRAYHKL-----------AEALLDQTPFPTGYRAIDIGASPGGWTEFLSSAGATVVAVDPGELIVTHP-------NVLHVPLLL--EHALDQISAMDKFHVCVCDINIRPQLMASLIAS-VAPHLHPHAIVVLTLKLSKRPTDAAVDQAIRDVCHVLG---------------------DEFEHFRIEWLHANTINERTL 311          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|813164696|ref|XP_012203408.1| (hypothetical protein SPRG_08788 [Saprolegnia parasitica CBS 223.65] >gi|641531790|gb|KDO25844.1| hypothetical protein SPRG_08788 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 113.62 bits (283), Expect = 3.197e-24
Identity = 93/344 (27.03%), Postives = 156/344 (45.35%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASL---HPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVITWVHRRKS 532
            R + V   CRD GW+ +S  ++          +R    ++ A+P +++  +  +L            E+ ++    + +H LH VH    +P+F +G+     +                    + P + ++P   RAY K+            E  +++  +    +A+D+GASPGGWT++LS   + VVAVD   L   HP       NV H+P  +  E A + +     FH+   DIN+ PQ  A LI   V PH+  HA+V+LTLK  ++PT A + +A+ D+           C +           +D+ E  R+ WLHAN+ +ERT+     R+K+
Sbjct:   63 RVYEVDATCRDPGWIPYSAAMQS---------TRRATFRVVAYPSSLQSGLVALL-----------AEQGIATDPKRYTHELHAVHD---APVFRFGVVPRRVIA-------------------EAPLADAVP--CRAYHKL-----------AEALLDQTPFPTGYRAIDIGASPGGWTEFLSSAGAAVVAVDPGELTVAHP-------NVLHLPLLL--EHALDQIAAMDKFHVCVCDINIRPQLMASLIAS-VAPHLHPHAIVVLTLKLSKRPTDAAVDQAIHDV-----------CLAL----------DDEFEHFRIEWLHANTVNERTLFA---RKKA 317          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|698792778|ref|XP_009829421.1| (hypothetical protein H257_06048 [Aphanomyces astaci] >gi|574116078|gb|ETV81563.1| hypothetical protein H257_06048 [Aphanomyces astaci])

HSP 1 Score: 112.079 bits (279), Expect = 2.152e-23
Identity = 106/340 (31.18%), Postives = 155/340 (45.59%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQ--SHSLTGPTSAP--PPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDR-KALDVGASPGGWTQYLSDK-LSQVVAVDGASLHPSLLPS-LSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVI 524
            R + V   C D  W+  S  L        +S  RS   ++ A+P +++  + ++L            +   +    Q SH LHVV S    P FYYG++   + S   PT+A   P S ++  P   E  PS  S  P  RAYFK        L+E   GG    +  +   +ALD+GASPGGWT++LS    S VVAVD     P +L   +  V  +   +  E A  +L     FH+   DIN+ P+  A LI + V   +  HA VILTLK  R+PT A +Q A++D++    +    Y                      + WLHAN+ +ERT++
Sbjct:   76 RVYTVTSMCHDPAWIPQSALL--------TSHQRSSVFRVVAYPSHLQNKLVQLL-----------HDYGYATHPRQHSHELHVVSSALAGPSFYYGVSAAGTKSTRDPTTAMERPSSCMAISP---EVSPSLHSQVP-CRAYFK--------LQEACRGGSVSLLPPRGYFRALDIGASPGGWTEFLSSSGASCVVAVD-----PGMLTIPVDGVSIIHLNMLVEAAHPILATMDKFHVCVCDINVRPRSMAKLI-RSVMAFLHPHAKVILTLKLGRRPTEAAVQLAVQDVQTELGQAFGAY---------------------DVRWLHANTINERTLV 357          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|673049419|ref|XP_008878670.1| (hypothetical protein H310_13083 [Aphanomyces invadans] >gi|574465598|gb|ETV92634.1| hypothetical protein H310_13083 [Aphanomyces invadans])

HSP 1 Score: 108.227 bits (269), Expect = 3.109e-22
Identity = 99/336 (29.46%), Postives = 152/336 (45.24%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDR-KALDVGASPGGWTQYLS-DKLSQVVAVDGASLHPSLLPS-LSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVI 524
            R + +   C D  W+  S +L          L R+   ++ A+P +++  + ++L            E   +   ++ +H LHVV +P  +P FY+G+     L   + APP        PS        ++P   RAYFK        L+E   GG  + +  +D  +A+D+GASPGGWT +LS +  S VVAVD     P +L   +  V  +   +  E A   L E   F L   DIN+ P+  A LI + V P +   A VILTLK  R+PT   +Q+A+ D++                R  G  D         + WLHAN+ +ERT++
Sbjct:   74 RLYIITSVCLDPSWMPHSHDLL--------PLQRTSVFRVVAYPNHLQTKLVDLL-----------HEHGYATHPTKHTHELHVVAAPRAAPYFYFGV-----LAVVSKAPPT-------PSEAGSTVVEAIP--CRAYFK--------LQEACRGGSMQLLPPQDGFRAIDIGASPGGWTSFLSRNGASCVVAVD-----PGMLTIPVDGVSIIHLNMLVEAALPQLSEMELFDLCVCDINVRPRSMAKLI-RSVLPFLTARAKVILTLKLGRRPTETAVQQAVCDVQ------------VELGRSFGAYD---------VRWLHANTINERTLV 341          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|1173955399|gb|OQS02369.1| (ribosomal RNA large subunit methyltransferase J [Thraustotheca clavata])

HSP 1 Score: 99.3673 bits (246), Expect = 2.481e-19
Identity = 91/333 (27.33%), Postives = 148/333 (44.44%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSHSLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASLHPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVI 524
            R + V  +C D GW+A+S E+       +   +R F  K+ A+P +++  + E++      +G R+  K+ +       H LHVV++   +PLF +G+ + +   G                         L    RAY K+ E   + +            +K    ALD+GASPGGWT++L+   + VVAVD       +   + N+ H+P  +  E+A + LK    F L   DIN+ P   A LI   V P +  +A V+LT K  R+PT   + +A   +           C++  K   G  +        +L WLHAN+ +ERT+ 
Sbjct:   60 RVYQVNASCSDAGWIAWSQEMN------KDKENRVF--KVMAYPNHLQQKLVEMI----AHEGFRVHPKDYT-------HELHVVYA---APLFLFGVIERNGEFGHVD--------------------EILNVPCRAYHKLAEALADCVP-----------FKDGYHALDIGASPGGWTEFLAKNGAHVVAVDPG----EITVHVENIIHLPMLL--EQAFDHLKTMKKFDLCVCDINIRPHKMAQLIAS-VAPFLHPNATVVLTFKLSRRPTQTAVDEAFNSV-----------CKTLSK---GFHE-------FKLTWLHANTINERTLF 311          
BLAST of EWM25206.1 vs. NCBI_GenBank
Match: gi|1173932005|gb|OQR84138.1| (hypothetical protein ACHHYP_13854 [Achlya hypogyna])

HSP 1 Score: 94.3597 bits (233), Expect = 1.327e-17
Identity = 91/338 (26.92%), Postives = 146/338 (43.20%), Query Frame = 0
Query:  192 RFFYVPYACRDMGWVAFSPELRQALKTARSSLSRSFCLKISAFPKNMEVAIGEILLTAPVAQGCRLEEKELSPSASQASHVLHVVHSPEWSPLFYYGLTQSH--SLTGPTSAPPPSFLSFLPPSFEKPPSSSSLPPVSRAYFKMREIWEERLEEGMEGGMEEEMWKKDRKALDVGASPGGWTQYLSDKLSQVVAVDGASL---HPSLLPSLSNVRHVPYRIQAEEATEVLKEEGPFHLVCVDINLFPQGAADLILQHVFPHVAHHALVILTLKFPRKPTGARLQKALRDLERIWAEDPEIYCRSSRKREEGHRDDEDKSEVLRLLWLHANSSHERTVI 524
            R + V   C D+GW+  S  +R+               ++ A+P  ++  + ++L            E  +S      +H LH VH       F++G+ + H  +  G  +  P S +                    RAY+K        LEE +     +  +  + +A+D+GASPGGWT++L+ + + VVAVD   L   HP +L       H+P  +  E+A   +     FHL   DIN+ P   A LI   V P++   A ++LTLK  R+PT A +Q+A+ D+           CR     +  HR          + WLHAN+ +ERT+ 
Sbjct:   61 RIYEVDATCHDIGWIVHSVAMRKVPMAV---------FRVFAYPGLLQEKLVQLL-----------TESGISADPKVYTHELHAVHC---DGEFHFGVVKRHHDADEGQCTDDPRSHVP------------------CRAYYK--------LEEALAA---DAPFPPETRAIDIGASPGGWTEFLASQGATVVAVDPGMLTVTHPRVL-------HLPMLL--EQALPQIAVMNKFHLCVCDINIRPHLMAKLI-SSVTPYLHPQAKIVLTLKLSRRPTDAAVQQAVDDV-----------CRE--LGQACHR--------FVVTWLHANTINERTLF 315          
The following BLAST results are available for this feature:
BLAST of EWM25206.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106883|gb|EWM25206.1|0.000e+0100.00ribosomal rna methyltransferase [Nannochloropsis g... [more]
gi|585106884|gb|EWM25207.1|0.000e+0100.00ribosomal rna methyltransferase [Nannochloropsis g... [more]
gi|553192214|ref|XP_005855534.1|5.280e-81100.00ribosomal rna methyltransferase [Nannochloropsis g... [more]
gi|669140732|ref|XP_008605934.1|3.945e-2527.75hypothetical protein SDRG_02141 [Saprolegnia dicli... [more]
gi|669140734|ref|XP_008605935.1|7.469e-2527.76hypothetical protein, variant [Saprolegnia diclina... [more]
gi|813164696|ref|XP_012203408.1|3.197e-2427.03hypothetical protein SPRG_08788 [Saprolegnia paras... [more]
gi|698792778|ref|XP_009829421.1|2.152e-2331.18hypothetical protein H257_06048 [Aphanomyces astac... [more]
gi|673049419|ref|XP_008878670.1|3.109e-2229.46hypothetical protein H310_13083 [Aphanomyces invad... [more]
gi|1173955399|gb|OQS02369.1|2.481e-1927.33ribosomal RNA large subunit methyltransferase J [T... [more]
gi|1173932005|gb|OQR84138.1|1.327e-1726.92hypothetical protein ACHHYP_13854 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5480rna5480Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications