EWM25245.1, cds5426 (CDS) Nannochloropsis gaditana

Overview
NameEWM25245.1
Unique Namecds5426
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:998463..998492 -
Alignment locationCM002465.1:998177..998283 -
Alignment locationCM002465.1:997844..997933 -
Alignment locationCM002465.1:997581..997593 -

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Properties
Property NameValue
Protein idEWM25245.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100571g3.1986.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:998463..998492 -
CM002465.1supercontigCM002465.1:998177..998283 -
CM002465.1supercontigCM002465.1:997844..997933 -
CM002465.1supercontigCM002465.1:997581..997593 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25245.1 vs. NCBI_GenBank
Match: gi|585106939|gb|EWM25245.1| (hypothetical protein Naga_100571g3 [Nannochloropsis gaditana])

HSP 1 Score: 134.42 bits (337), Expect = 1.182e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query:    1 MILARQKALQEEEERLQQQREEEEKKIAAERAAEEAELAAKEEEKRLKKEKARAKMEKQKAEGTYMTKAQREKAMRRQE 79
            MILARQKALQEEEERLQQQREEEEKKIAAERAAEEAELAAKEEEKRLKKEKARAKMEKQKAEGTYMTKAQREKAMRRQE
Sbjct:    1 MILARQKALQEEEERLQQQREEEEKKIAAERAAEEAELAAKEEEKRLKKEKARAKMEKQKAEGTYMTKAQREKAMRRQE 79          
BLAST of EWM25245.1 vs. NCBI_GenBank
Match: gi|673014130|ref|XP_008861026.1| (translation initiation factor aIF-2 [Aphanomyces invadans] >gi|574482624|gb|ETW09615.1| translation initiation factor aIF-2 [Aphanomyces invadans])

HSP 1 Score: 56.6102 bits (135), Expect = 1.541e-7
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    5 RQKALQEEEERLQQQREEEEKKIAAERAAEEAELAA--KEEE----KRLKKEKARAKMEKQKAEGTYMTKAQREKAMRRQ 78
            RQ AL+ EEERL++ +EEE++K    R AEEA L A  K+EE    KRL K   +AK++ QKA+GTYMTKAQ+EKA R Q
Sbjct:  124 RQAALKAEEERLKKIQEEEDRKF---REAEEARLEAIRKKEELAERKRLAK---KAKVDAQKADGTYMTKAQKEKAKRAQ 197          
BLAST of EWM25245.1 vs. NCBI_GenBank
Match: gi|698794350|ref|XP_009830204.1| (translation initiation factor aIF-2 [Aphanomyces astaci] >gi|574114793|gb|ETV80280.1| translation initiation factor aIF-2 [Aphanomyces astaci])

HSP 1 Score: 56.6102 bits (135), Expect = 1.666e-7
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 0
Query:    5 RQKALQEEEERLQQQREEEEKKIAAERAAEEAELAA---KEEEKRLKKEKARAKMEKQKAEGTYMTKAQREKAMRRQ 78
            RQ  L+ EE+RL+Q +EEE++K    R AEEA L     KEE    K++  +AK+E QKAEGTYMTKAQ+EKA R Q
Sbjct:  119 RQAVLKAEEDRLKQIQEEEDRKF---REAEEARLDVIRKKEELAERKRQAKQAKVEAQKAEGTYMTKAQKEKARRAQ 192          
The following BLAST results are available for this feature:
BLAST of EWM25245.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106939|gb|EWM25245.1|1.182e-39100.00hypothetical protein Naga_100571g3 [Nannochloropsi... [more]
gi|673014130|ref|XP_008861026.1|1.541e-756.25translation initiation factor aIF-2 [Aphanomyces i... [more]
gi|698794350|ref|XP_009830204.1|1.666e-754.55translation initiation factor aIF-2 [Aphanomyces a... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5439rna5439Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications