rna5425, rna5425 (mRNA) Nannochloropsis gaditana

Overview
Namerna5425
Unique Namerna5425
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length564
Alignment locationCM002465.1:971257..971830 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101244g2.1100.mrna
Orig protein idgnl|cribi|Naga_101244g2.1100
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:971257..971830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101244g2gene5245Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25261.1cds5412Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5425rna5425-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5425 ID=rna5425|Name=rna5425|organism=Nannochloropsis gaditana|type=mRNA|length=564bp
ATGACGGGCGTGGTCACTGTCACGTCCTCCGCGCAACAGCCGGACATTGC
CGCAGCCAGTGCAAGCGATGAGGCCAATGGGGCCACCATGGGTGAGGATA
CTGAGGACATAGAACAAGAGCTCTTCGGCCTTCCGGCTGGGACGGATCTC
ACCTCGACTGAGGTCGAGGCATCGCCTGCGATGGCAGAAGCAGCATTTCA
GTCCCCCAATCCCCTGTTGGAAGTACTGGTAAGGCTGATTGCGGCAGGAG
AGGGCACAGAGGAAATCAAGGCGCGTCTGAAGGAGGTAGAGGACAGGTTG
GGGCGTGAGGAGGGCGGAGATCTCTCTCCCTTACCGGGCTCTGTGATGCA
TGCTGCCACTTTGATAGCCGAGGGCGAGTACGTACGGGTATTGACAGAGA
CGCAGGTCGGACGCACCTTTTTCGCCACGGCAGCGACCGCCGCAGTTGGT
AGGAAGAATCAGGACGTGGATTCGTTGGAGGAGAGCGTGCATCAGGCCCT
CAACCTGGCGCTTACGCGAATTATTCAGGGCCCTCCATACCCGGATCTAC
CCAAGCCTGCCTGA
back to top

protein sequence of rna5425

>rna5425-protein ID=rna5425-protein|Name=rna5425|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MPRMAGWQYVRMKREAMARRTGPWRRGGRARRRRCTSVEVKREGQREGGR
SVFDEYVAEHSKEESVIFFDKVHLSNSPFRKSMYIHANGTTSQTCKSTLH
SRPCQSRMQQHCIRQNE
back to top

mRNA from alignment at CM002465.1:971257..971830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5425 ID=rna5425|Name=rna5425|organism=Nannochloropsis gaditana|type=mRNA|length=574bp|location=Sequence derived from alignment at CM002465.1:971257..971830- (Nannochloropsis gaditana)
TCCCTCCCTCCTTCCCGAGTCTCAGATCCCTGACCTTGAGGGTCAAGGCT
CGGCTTCGTCCAAGATGGAAACAACACCGCTCCGCATGAACCCCAGCACC
GGGAGTGAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGAGTGGCGGGGAAA
TCGAGGGGTGGATGCCGCGAATGGCTGGCTGGCAGTATGTGAGGATGAAG
AGGGAGGCAATGGCAAGAAGGACAGGACCGTGGAGGAGGGGAGGGAGGGC
GAGGAGGAGGAGATGCACCTCTGTTGAGGTGAAGAGGGAGGGACAGAGGG
AGGGAGGCAGGAGTGTTTTCGACGAATACGTCGCGGAGCACAGCAAGGAA
GAGTCAGTGATCTTCTTCGATAAAGTGCATTTGTCCAACTCCCCATTTAG
AAAATCAATGTACATCCATGCGAACGGTACGACCTCCCAGACATGCAAGT
CCACCCTTCACAGCCGCCCATGTCAAAGTAGAATGCAGCAACACTGCATT
CGCCAGAACGAATAAGAGCGCCGCTGGCGTCTACGTGGTTCCACGGGCCC
TCCCTTGTTGGCCTGAGCCTTGCC
back to top

Coding sequence (CDS) from alignment at CM002465.1:971257..971830-

>rna5425 ID=rna5425|Name=rna5425|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at CM002465.1:971257..971830- (Nannochloropsis gaditana)
ATGCCGCGAATGGCTGGCTGGCAGTATGTGAGGATGAAGAGGGAGGCAAT
GGCAAGAAGGACAGGACCGTGGAGGAGGGGAGGGAGGGCGAGGAGGAGGA
GATGCACCTCTGTTGAGGTGAAGAGGGAGGGACAGAGGGAGGGAGGCAGG
AGTGTTTTCGACGAATACGTCGCGGAGCACAGCAAGGAAGAGTCAGTGAT
CTTCTTCGATAAAGTGCATTTGTCCAACTCCCCATTTAGAAAATCAATGT
ACATCCATGCGAACGGTACGACCTCCCAGACATGCAAGTCCACCCTTCAC
AGCCGCCCATGTCAAAGTAGAATGCAGCAACACTGCATTCGCCAGAACGA
ATAA
back to top
Synonyms
Publications