rna5355, rna5355 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5355
Unique Name	rna5355
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	642
Alignment location	CM002465.1:786346..788940 -

Link to JBrowse

Properties


Property Name	Value
Product	ddb1- and cul4-associated factor 8
Orig transcript id	gnl\|cribi\|Naga_100196g13.3059.mrna
Orig protein id	gnl\|cribi\|Naga_100196g13.3059
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:786346..788940 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100196g13	gene5176	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25335.1	cds5342	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5355	rna5355-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:786346..788940-
coding sequence from alignment at CM002465.1:786346..788940-

mRNA sequence

>rna5355 ID=rna5355|Name=rna5355|organism=Nannochloropsis gaditana|type=mRNA|length=642bp
ATGAGCACTTTCCTTGTCGCTTTGACTCGCGGCTCGGTGGCGTGCACCGC
TGCCGGAAGACATGGCCTCGCAAATCTTCGCAAAAAGCGTCCTTTAATAC
CAAAAGTAGATGGAGTCATGAACACTCTGCCTGTATCTCAAAATTATGGC
TTTCATAGCTCGGCGTCGGTTTTAGGGGGTGGAACGCCAACGAAATGGAA
CCATGTGTGGAATTGGAAAATGAAGCAACGTCTGGCAGCCATGAAAGAAG
CGGACGAAAAGCCTCAGCAAAGTGAGGAAAAAAGTCACGAGAAGGACAAC
ATGTTTCGACCCCTGCCGGGAGAACGGGTGATTGAGTTGGACGAGAATCT
TCCGGATGGTGTTTTGGAGGAGTACTGGGCTGAGCTTCGGAGAGAGCGAG
AGGGGTCCCATGAAGGAACTGATGGCAAACAGACCTCTGGCCGGGGGCAG
TCCAAGCGGAAAACGATCAAGAAGCACTTCCTTTATGGTTGGACTTATGC
CCCCAAAAGAAATAAACAAATTACGGAAGAAGATACAGGGGCAAACACAT
CAGAGATAGACGGGAATGCTCGCGAATTCAACAACTCGCAAAAGCCGGCA
TCAACACCTGCTGGAAGAGCTGCTCTTAGGAATGAGGGCTGA

protein sequence of rna5355

>rna5355-protein ID=rna5355-protein|Name=rna5355|organism=Nannochloropsis gaditana|type=polypeptide|length=648bp
MYRTAEERPMASDCISKYRACTAPSARLGALQQNLTFDVLFGRQQSRIIT
HHNTCRRVRSAPSMVGKLKVDGRLTGHRGCVNTVAFSEHGDFCVTGSDDT
YLMLWDVAAHECRMKHLSGHQGNIFCARFLPHTNNTEVVSVAADGQVRWN
SLARPSSLLHCPWIVLTLPLSGISKQLARHNGRAHRLAVTETTSFLTCGE
DGRVLGFDTRDAHKRHLLTVTTPEDDVIPLYALSCSPVDGHSFVVGGTSV
YMHHYDARHVREPVGRYAPFHLRDDKDGASKARKLVSDHITGTAFNWNGR
EVLATYNDECVYLFRVECDAARGGAEGEGEQVPWESSQDGLASDHGEERA
EHRRPSHMGPREAEEDGQEDASPRAGDSPALHPCSAAYSNPQKRMRQQTS
TRQTMRGDVVEEKLRGYTQVFRGHRNDHTVKQVNFFGARSEYVVSGCDTG
HIFMWETQSGELAQLLYGDRRGAVNCLETHPNLPVLATSGLEHDVKIWRP
TRGLSVRKGALKAHGGETAEKLAERNAKERKKAARISNFTRFMMGRALSS
VSGERAGSGSEEEDSENGLEGEEISGDGQSSRQAWMMDYARFLVGGDESS
EDEDESGLEGVLEDSSDVSSSESSHENDQSESGMRSGVDAEDGDTDDG

mRNA from alignment at CM002465.1:786346..788940-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5355 ID=rna5355|Name=rna5355|organism=Nannochloropsis gaditana|type=mRNA|length=2595bp|location=Sequence derived from alignment at CM002465.1:786346..788940- (Nannochloropsis gaditana)
AGGAGGCTCGATCCTCCTACTACAGGTGTACTTCCTGCTTGCCATGGTGC
TCTACACGATGAACTCCCACGGCAATACAAACATGTTCGACAACTTACAG
CTTCCTTGTATACAAACACGCACAGGGGAAACATCCGGAATCGCAGATTG
CTTACAGTGAGTGTCGTGCCTGAGGCAATCCCTACCAGGATTGCAGTGAA
GCAAGGAGAAAAAAAGCGTGGTAGAGGTCGAAAGTGATAATCGGGCTCTC
CACGCACCGGAAAGCCTTCTGTAAGACTTGCGAAGAGCCAACCCTTCGTT
GCATTTTACCCCCAGAGGTCCATGTATAGAACTGCGGAGGAACGTCCCAT
GGCATCGGATTGCATCTCAAAATATAGAGCGTGCACCGCTCCGTCGGCTC
GATTAGGAGCATTGCAGCAAAATTTGACATTCGACGTGCTTTTTGGACGG
CAGCAAAGCAGGATTATTACCCATCACAACACTTGCCGACGCGTTCGTTC
GGCTCCAAGCATGGTGGGGAAGCTCAAAGTCGACGGCCGTCTCACGGGCC
ACCGGGGGTGCGTGAATACCGTTGCTTTCTCCGAGCACGGAGACTTCTGT
GTGACCGGGTCGGACGACACTTATTTGATGCTATGGGATGTAGCAGCGCA
TGAATGTCGGATGAAACACCTCAGTGGACACCAAGGCAACATATTTTGCG
CGCGTTTCCTTCCTCACACTAACAATACTGAGGTCGTGTCTGTGGCTGCC
GACGGCCAAGTTCGATGGAACTCCCTTGCCCGACCCTCCTCTCTGCTCCA
TTGTCCTTGGATCGTCTTGACACTACCCTTGTCAGGCATCAGCAAGCAAC
TGGCTCGGCACAACGGTCGAGCCCATCGGTTGGCAGTGACGGAGACGACC
TCCTTCTTGACCTGTGGGGAGGACGGCCGCGTCCTGGGCTTCGACACGCG
CGACGCACATAAGCGTCACTTGCTGACCGTGACCACCCCTGAGGACGACG
TGATCCCACTCTACGCGTTGAGCTGCAGCCCGGTGGACGGTCATTCCTTC
GTGGTGGGAGGCACGTCGGTGTACATGCATCACTACGACGCTCGGCATGT
GCGTGAGCCGGTGGGCCGGTACGCACCCTTCCATTTGCGGGACGACAAGG
ATGGAGCAAGCAAGGCGAGGAAGCTCGTCAGCGACCACATCACGGGCACG
GCCTTCAATTGGAACGGGAGAGAGGTCCTGGCGACGTACAACGACGAATG
CGTCTACTTGTTTCGGGTGGAATGCGATGCTGCCCGAGGCGGGGCGGAGG
GGGAGGGAGAACAGGTGCCCTGGGAAAGCAGCCAAGATGGGTTGGCCTCT
GATCATGGGGAGGAGAGGGCCGAGCACCGGCGTCCCAGCCATATGGGACC
ACGCGAGGCGGAGGAAGACGGGCAGGAGGATGCCTCCCCGCGCGCGGGAG
ACTCTCCTGCCCTGCATCCATGTTCAGCGGCGTATTCGAACCCACAAAAA
CGGATGCGGCAACAGACATCGACGCGGCAAACGATGAGAGGAGATGTAGT
GGAGGAGAAGCTGCGAGGATATACCCAGGTCTTCCGAGGGCACCGCAATG
ACCACACAGTGAAGCAGGTGAACTTCTTTGGCGCCCGAAGCGAGTACGTT
GTCTCCGGGTGCGACACGGGGCACATATTCATGTGGGAAACTCAGAGCGG
GGAGCTGGCGCAGTTGCTGTACGGGGACCGACGGGGGGCGGTAAACTGCC
TCGAGACTCACCCCAACCTCCCCGTACTCGCGACAAGCGGTTTAGAGCAC
GACGTGAAAATATGGCGACCCACCAGAGGGTTGAGTGTGCGAAAAGGAGC
GTTGAAGGCTCATGGAGGGGAAACGGCAGAGAAACTAGCCGAGCGGAATG
CAAAGGAGCGCAAGAAAGCTGCGCGCATCTCGAATTTTACAAGGTTCATG
ATGGGGAGGGCGCTGTCGAGTGTATCGGGTGAGCGCGCGGGGAGCGGGTC
GGAAGAAGAAGATTCAGAGAATGGATTGGAAGGGGAAGAAATTAGTGGTG
ACGGGCAATCTTCTCGACAGGCTTGGATGATGGATTACGCAAGGTTTTTG
GTCGGCGGGGACGAGAGCAGCGAGGACGAAGATGAGAGCGGGCTAGAAGG
GGTGCTTGAGGACAGTAGCGATGTGTCGTCCTCGGAAAGTTCCCATGAAA
ACGATCAAAGCGAGAGTGGCATGAGGAGCGGTGTCGATGCTGAGGATGGA
GATACGGATGATGGCTGAGAGTTAGGCGACCAAGGCCGGGCCTGAAGCCG
ACTTAAACCGTTCGAAACATCGTAGTGGGACAATATACTTAATGATTCGC
CTGTATAAACCTTGAAGATATCTTGAAGAGAGACAACAAAACCAAATAAG
TCTTAAAAGGTTAGGTGACGGGTAAAATTCCCACGTTTTCCTTCATGAAA
ATAATCGGAAATAGTCTACTGCTTTTTGGAAGAGGTATGGGGAGGTTGAT
AGGGCTTGCTTTTGCTCACAAATATGATGTTATTGTATCGCTTGAGTTCT
CTTGGGACGCAAGAAATGGTTAAAGTTGACCTTTGTCAAAGCTGG

Coding sequence (CDS) from alignment at CM002465.1:786346..788940-

>rna5355 ID=rna5355|Name=rna5355|organism=Nannochloropsis gaditana|type=CDS|length=1947bp|location=Sequence derived from alignment at CM002465.1:786346..788940- (Nannochloropsis gaditana)
ATGTATAGAACTGCGGAGGAACGTCCCATGGCATCGGATTGCATCTCAAA
ATATAGAGCGTGCACCGCTCCGTCGGCTCGATTAGGAGCATTGCAGCAAA
ATTTGACATTCGACGTGCTTTTTGGACGGCAGCAAAGCAGGATTATTACC
CATCACAACACTTGCCGACGCGTTCGTTCGGCTCCAAGCATGGTGGGGAA
GCTCAAAGTCGACGGCCGTCTCACGGGCCACCGGGGGTGCGTGAATACCG
TTGCTTTCTCCGAGCACGGAGACTTCTGTGTGACCGGGTCGGACGACACT
TATTTGATGCTATGGGATGTAGCAGCGCATGAATGTCGGATGAAACACCT
CAGTGGACACCAAGGCAACATATTTTGCGCGCGTTTCCTTCCTCACACTA
ACAATACTGAGGTCGTGTCTGTGGCTGCCGACGGCCAAGTTCGATGGAAC
TCCCTTGCCCGACCCTCCTCTCTGCTCCATTGTCCTTGGATCGTCTTGAC
ACTACCCTTGTCAGGCATCAGCAAGCAACTGGCTCGGCACAACGGTCGAG
CCCATCGGTTGGCAGTGACGGAGACGACCTCCTTCTTGACCTGTGGGGAG
GACGGCCGCGTCCTGGGCTTCGACACGCGCGACGCACATAAGCGTCACTT
GCTGACCGTGACCACCCCTGAGGACGACGTGATCCCACTCTACGCGTTGA
GCTGCAGCCCGGTGGACGGTCATTCCTTCGTGGTGGGAGGCACGTCGGTG
TACATGCATCACTACGACGCTCGGCATGTGCGTGAGCCGGTGGGCCGGTA
CGCACCCTTCCATTTGCGGGACGACAAGGATGGAGCAAGCAAGGCGAGGA
AGCTCGTCAGCGACCACATCACGGGCACGGCCTTCAATTGGAACGGGAGA
GAGGTCCTGGCGACGTACAACGACGAATGCGTCTACTTGTTTCGGGTGGA
ATGCGATGCTGCCCGAGGCGGGGCGGAGGGGGAGGGAGAACAGGTGCCCT
GGGAAAGCAGCCAAGATGGGTTGGCCTCTGATCATGGGGAGGAGAGGGCC
GAGCACCGGCGTCCCAGCCATATGGGACCACGCGAGGCGGAGGAAGACGG
GCAGGAGGATGCCTCCCCGCGCGCGGGAGACTCTCCTGCCCTGCATCCAT
GTTCAGCGGCGTATTCGAACCCACAAAAACGGATGCGGCAACAGACATCG
ACGCGGCAAACGATGAGAGGAGATGTAGTGGAGGAGAAGCTGCGAGGATA
TACCCAGGTCTTCCGAGGGCACCGCAATGACCACACAGTGAAGCAGGTGA
ACTTCTTTGGCGCCCGAAGCGAGTACGTTGTCTCCGGGTGCGACACGGGG
CACATATTCATGTGGGAAACTCAGAGCGGGGAGCTGGCGCAGTTGCTGTA
CGGGGACCGACGGGGGGCGGTAAACTGCCTCGAGACTCACCCCAACCTCC
CCGTACTCGCGACAAGCGGTTTAGAGCACGACGTGAAAATATGGCGACCC
ACCAGAGGGTTGAGTGTGCGAAAAGGAGCGTTGAAGGCTCATGGAGGGGA
AACGGCAGAGAAACTAGCCGAGCGGAATGCAAAGGAGCGCAAGAAAGCTG
CGCGCATCTCGAATTTTACAAGGTTCATGATGGGGAGGGCGCTGTCGAGT
GTATCGGGTGAGCGCGCGGGGAGCGGGTCGGAAGAAGAAGATTCAGAGAA
TGGATTGGAAGGGGAAGAAATTAGTGGTGACGGGCAATCTTCTCGACAGG
CTTGGATGATGGATTACGCAAGGTTTTTGGTCGGCGGGGACGAGAGCAGC
GAGGACGAAGATGAGAGCGGGCTAGAAGGGGTGCTTGAGGACAGTAGCGA
TGTGTCGTCCTCGGAAAGTTCCCATGAAAACGATCAAAGCGAGAGTGGCA
TGAGGAGCGGTGTCGATGCTGAGGATGGAGATACGGATGATGGCTGA

Synonyms

Publications