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Properties
| Property Name | Value |
|---|
| Product | Winged helix-turn-helix transcription repressor |
| Orig transcript id | gnl|cribi|Naga_100196g8.3061.mrna |
| Orig protein id | gnl|cribi|Naga_100196g8.3061 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:779252..781870 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5352 ID=rna5352|Name=rna5352|organism=Nannochloropsis gaditana|type=mRNA|length=1532bp
GCTCGGCCATCATTTCCAGTCCTGTTCGTCGTATCTTGTTCATACAATTT
CTTTTTCTTTTCACCTTGCACACATCTACCCACAGTATGCTGGCCCGCTC
CATCCTTTGTCGTCCTGCCGTTAGGTATGGTTTGACGAGCTCAATCCCCT
GCCTGCGGACAAAGTGTCAAATGTCGCTGATGTCTACGGCCCCGGCAGGG
AAATGGGAAAAGGAATACGACTTCATACTGGCGGAAAAGAAGGGCAAAGT
TGCCCTTCTGACACTGAACCGGCCCAAGGCCTTGAATGCCCTGTGCAACG
GCATCATCCAAGACCTCATCGATGCCACCACGGCCATCGCGGCTGATGAT
ACTGTCGGTGCAATCGTTCTGACCGGCTCGACGAAAGCTTTCGCTGCAGG
TGCGGACATAAAGGAAATGAAGGACAAGTCATTCGTGCAGGCCTTTAGCT
CGAACATGTTTGCAGAATGGGGTCACATTGCCCGGGTAACCAAGCCTATC
GTGGCGGCTGTGAATGGTTATGCGCTAGGAGGGGGTTGTGAGCTGATGAT
GATGGCAGACATCGTCATCGCCGGAGAAAACGCCAAATTTGGACAACCTG
AGATCACGCTGGGGGTGATTCCTGGGTGCGGAGGGACGCAGCGCCTGGTC
CGGGCGATAGGGAAGAGCAAGGCGATGGAGTTGGTGTTGACAGGCGGAAT
GATAGATGCGCTGCAGGCGGAGAGAGATGGCCTCGTGTCTAAGGTGGTGC
CCGCCGAGAAAACCGTCGACGTGGCCCTGGAAATGGCGACCAAGATCGCC
TCCTATTCCTTGCCTGTGGCGGCGGCCGCCAAGGAGACTGTGAACGCGGC
ATTCGAACTCAATTTGGCGGAGGGTTTGCGGTTCGAGCGGCGGATTTTCC
ACAGCCTCTTCGCCCTCCAGGACCAAAAAGAGGGAATGGCAGCCTTCGTG
GAGAAAAGGAAGCCCACGTTCACGAATACGTAAGCGCCAACGGTGGAAGT
AGGTAGAAAGAGATTGCAAAATCGATGCTAGCGTCAGAAGGGAAATGTGG
AGGGACGGGTGCGACAAGACGTGCGGGAAAAGCACGGAAAAGCAGGGAAA
AGGAGGATACATGCATGCGATACTGGAGGCACAGGCCCCGATGATGTGAG
CACGGTGAGAAAAAACAAAGGGTTCGAGCATGCCGCGGAGGGTCTAGTGT
GAGGAATGTGCTCCTTGACGATGGGGACGGAAGGAATTTTTTTCACAGCC
CACGAGCAGCGAATCCTCTGCCAAGCGCGTGGGAGGGACCTCACGGCAGG
CTGGAAAAATGACAACGACAATGCCCGATTTCTTTGGTCACAGCAAGCGT
TGTCTCACCTATGGACAGGGTTGCGCTATGCTACTATCGACAAGCTGATT
ATGCACATGATACATTCCACCTATACTGGCTCCAATCCCTCCGAGGCTTT
CCCTCTCTGACAGCTATTGCCTCTTAACGCTCCTTCGCCACACCTTGCAT
CCATACCGCATTCGAAATATTCTCCCTCCTCC back to topprotein sequence of rna5352 >rna5352-protein ID=rna5352-protein|Name=rna5352|organism=Nannochloropsis gaditana|type=polypeptide|length=538bp
MGDSTGSKDRQRPTLRSTCPPFIPSRMFTQSSSKPTSSPSPSTVSYNYQG
QNQLQSDYNQFSNQHHYQFHQSDGERGEQRLNFRYAQQFQPHPLQHTPST
FVDDCHDPSPAFNRSVVCSSLPVNDSSFWDPALVDSLRHAIEALFSLENL
KTNYTIAKHMRSGSIPVTKLLSLPQIRQVLENVGGTCGQERLLLAQAVAH
SNSVATCENGKKIGRVDHSSGGDLAFRCVEIRSLPEGSTEASVRALVDRF
GEVTHVKLGGMDEEGKEKDEKPPCQGEQALVEFAAPAGALQCVDTLSGTK
SNWRSSVRVTFLNGFSTGQVATMAGLEILHAAQEGGATTLKGPQKESTGS
GGSCSATSGIPGPVPTTRTSTGTGGPASTLAGACLLPPVLPEGDHTGHIV
ELEVDAAGRGVRGVLKREGQRRTLVSFQYSDAAPLAVGERVAFSVKHIDS
KAVVQNLVVAPPLPSTPLSTLNSGARTGAARPLGGRVIPTTRNGGIMARG
PSGSHGFHFPRTRPSGEVLELLDALKLNGAQQKEVASK back to topmRNA from alignment at CM002465.1:779252..781870+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5352 ID=rna5352|Name=rna5352|organism=Nannochloropsis gaditana|type=mRNA|length=2619bp|location=Sequence derived from alignment at CM002465.1:779252..781870+ (Nannochloropsis gaditana)
AGCGACGTCTCCCCATGCAGCAGTGCAGGAACAGCGAGGGCATCCAAACG
GAATATTGAGCCATGTGCAATGCCCCTACCTcttcttgccttttcctcct
tcgcaaGGAGGCGGACATCACGTCCCCACGAATCGGGGAGGTTTCAATTG
TCCCGCCACGCTGGTTGGaagtctttttcccccttggtGTGCTGACGATT
ATAAAGTGTCCAGAGTAGCAGTAAAGCCGGCAGGCCTGGCCTTCGCCTGA
GTTCCTAGCTCTCGCCCGTGGTCCtggccccttcctttcccggcgccccc
ccttccttcttgccaCTTTACTTAAAGGCGCTCTCACTGCAATCACGACA
CAGCAAGCCTTCCCTATCGAGCGTCATGGGCGATTCCACGGGTTCAAAAG
ATCGCCAACGCCCAACTTTGAGGTCGACATGCCCGCCTTTCATACCTTCA
AGGATGTTCACgcagtcctcctccaagccaacctcctccccgagccCGTC
CACCGTGTCGTACAACTATCAAGGCCAAAACCAGCTTCAATCCGATTACA
ATCAGTTCTCAAACCAACATCACTATCAGTTCCACCAGTCagatggagaa
agaggcgagcaGCGGCTTAACTTTCGCTATGCACAGCAATTCCAGCCTCA
TCCATTGCAACACACACCTTCCACATTTGTGGACGACTGTCACGACCCGT
CGCCTGCCTTTAATCGGTCTGTCGTATGTTCGTCATTGCCCGTGAATGAC
TCTTCTTTCTGGGACCCCGCTTTGGTAGACTCTCTCAGGCATGCAATCGA
AGCGCTCTTCTCATTGGAGAATTTGAAGACCAACTACACAATTGCCAAAC
ACATGCGGAGTGGCTCGATTCCGGTCACAAAATTATTGTCCTTACCACAA
ATAAGGCAAGTATTGGAGAACGTTGGAGGCACATGCGGCCAGGAGCGCCT
CCTGCTGGCCCAGGCTGTTGCGCACTCTAATTCTGTGGCCACCTGTGAGA
ACGGGAAAAAAATTGGTCGCGTCGATCACTCCTCTGGGGGTGACCTGGCC
TTTCGGTGCGTGGAAATCAGGAGTTTACCGGAAGGAAGTACTGAAGCTAG
TGTACGTGCTCTTGTCGACCGATTCGGGGAGGTCACGCATGTCAAGttgg
gagggatggacgaagagggaaaagagaaggatgagaagCCTCCCTGTCAA
GGAGAGCAGGCTCTCGTCGAATTCGCTGCGCCAGCCGGTGCACTTCAGTG
TGTAGATACATTGAGTGGGACCAAGTCCAACTGGCGTTCGTCGGTGCGGG
TGACCTTCTTGAACGGATTTTCGACGGGTCAGGTGGCCACCATGGCAGGG
TTGGAAATTCTCCACGCAgctcaggagggaggggcgacgaCGCTCAAGGG
TCCCCAAAAAGAAAGCACAGGTAGTGGCGGCTCTTGCAGCGCGACAAGCG
GCATCCCTGGGCCAGTGCCGACCACGAGGACAAGCACAGGTACCGGGGGT
CCCGCCTCTACCCTGGCTGGTgcttgcctcctgcctcctgtcctccctga
AGGAGACCACACCGGACACATTGTTGAGCTCGAGGTAGATGCGGCCGGCA
GAGGAGTACGAGGGGTCCTCAAACGGGAAGGCCAGAGACGAACGCTTGTC
TCTTTTCAGTACTCGGATGCGGCACCGTTGGCCGTGGGCGAGCGGGTTGC
GTTTTCTGTCAAGCATATTGACAGCAAGGCCGTCGTCCAGAATTTGGTGG
TAgctccccccctaccctccacccctctctcaACTCTCAACTCTGGTGCC
AGGACCGGGGCGGCAAGGCCgttggggggaagggttATCCCTACGACCCG
GAACGGGGGCATCATGGCCAGAGGTCCGTCGGGCTCGCACGGTTTCCACT
TCCCTCGAACGAGGCCTTCGGGGGAAGTGCTGGAGCTCCTGGACGCTCTG
AAATTGAATGGAGCCCAGCAGAAGGAGGTAGCTAGTAAATAGGATTTCGG
GCATGGAATAGGGGATGGAAGCGGCGTAAGGAAGACATGTGCGGACTTTT
CAAAGCTTTTGCATGCATGCCTTTTGTGATATTTAAAAAATGATTTAAGC
ATATGAATAGGGCCTTTTTGCAAAAATTACGATGAAAGGCTGCAAGAAGG
CCCGTCAAAGTATCCAGAAGGCCTCGACGATTTTATCGACGCGTGTACAT
AGGGAAAATGGAATATTGTGTATTTTCAAAGTGCTTACTTGTGAGTCCAG
CATGGATTCGTACTCGTCGATAGAGAAACTTTTGAGACAGAAGAAAATAG
GACCATAACGTGTTATTGAAAGACAAAACGCAAGAAACAACCTCGATGCa
agcgggaaagaaagcgtcAAAGAAAAGGATGTCACAGTAATCGTCTCGCT
CGCTCAATGGAGGATCGGGGGCAATGCCTTTCTCATGGTTTTTGATTCGA
TGTAAAGTTCCTCATTCGGACTTGATTCCCGGgcgaaaggagaagcggat
GGCCACAGGATCGAAGACATCTTGTGGGAATATCGGGCTTCACGTCAGGC
AACTCAGAGCATCCAGGTCGACAATCCTAGTAAAgcaaagaagaagcagc
gaaGAACGTTTTTGAGCCC back to topCoding sequence (CDS) from alignment at CM002465.1:779252..781870+ >rna5352 ID=rna5352|Name=rna5352|organism=Nannochloropsis gaditana|type=CDS|length=1617bp|location=Sequence derived from alignment at CM002465.1:779252..781870+ (Nannochloropsis gaditana)
ATGGGCGATTCCACGGGTTCAAAAGATCGCCAACGCCCAACTTTGAGGTC
GACATGCCCGCCTTTCATACCTTCAAGGATGTTCACgcagtcctcctcca
agccaacctcctccccgagccCGTCCACCGTGTCGTACAACTATCAAGGC
CAAAACCAGCTTCAATCCGATTACAATCAGTTCTCAAACCAACATCACTA
TCAGTTCCACCAGTCagatggagaaagaggcgagcaGCGGCTTAACTTTC
GCTATGCACAGCAATTCCAGCCTCATCCATTGCAACACACACCTTCCACA
TTTGTGGACGACTGTCACGACCCGTCGCCTGCCTTTAATCGGTCTGTCGT
ATGTTCGTCATTGCCCGTGAATGACTCTTCTTTCTGGGACCCCGCTTTGG
TAGACTCTCTCAGGCATGCAATCGAAGCGCTCTTCTCATTGGAGAATTTG
AAGACCAACTACACAATTGCCAAACACATGCGGAGTGGCTCGATTCCGGT
CACAAAATTATTGTCCTTACCACAAATAAGGCAAGTATTGGAGAACGTTG
GAGGCACATGCGGCCAGGAGCGCCTCCTGCTGGCCCAGGCTGTTGCGCAC
TCTAATTCTGTGGCCACCTGTGAGAACGGGAAAAAAATTGGTCGCGTCGA
TCACTCCTCTGGGGGTGACCTGGCCTTTCGGTGCGTGGAAATCAGGAGTT
TACCGGAAGGAAGTACTGAAGCTAGTGTACGTGCTCTTGTCGACCGATTC
GGGGAGGTCACGCATGTCAAGttgggagggatggacgaagagggaaaaga
gaaggatgagaagCCTCCCTGTCAAGGAGAGCAGGCTCTCGTCGAATTCG
CTGCGCCAGCCGGTGCACTTCAGTGTGTAGATACATTGAGTGGGACCAAG
TCCAACTGGCGTTCGTCGGTGCGGGTGACCTTCTTGAACGGATTTTCGAC
GGGTCAGGTGGCCACCATGGCAGGGTTGGAAATTCTCCACGCAgctcagg
agggaggggcgacgaCGCTCAAGGGTCCCCAAAAAGAAAGCACAGGTAGT
GGCGGCTCTTGCAGCGCGACAAGCGGCATCCCTGGGCCAGTGCCGACCAC
GAGGACAAGCACAGGTACCGGGGGTCCCGCCTCTACCCTGGCTGGTgctt
gcctcctgcctcctgtcctccctgaAGGAGACCACACCGGACACATTGTT
GAGCTCGAGGTAGATGCGGCCGGCAGAGGAGTACGAGGGGTCCTCAAACG
GGAAGGCCAGAGACGAACGCTTGTCTCTTTTCAGTACTCGGATGCGGCAC
CGTTGGCCGTGGGCGAGCGGGTTGCGTTTTCTGTCAAGCATATTGACAGC
AAGGCCGTCGTCCAGAATTTGGTGGTAgctccccccctaccctccacccc
tctctcaACTCTCAACTCTGGTGCCAGGACCGGGGCGGCAAGGCCgttgg
ggggaagggttATCCCTACGACCCGGAACGGGGGCATCATGGCCAGAGGT
CCGTCGGGCTCGCACGGTTTCCACTTCCCTCGAACGAGGCCTTCGGGGGA
AGTGCTGGAGCTCCTGGACGCTCTGAAATTGAATGGAGCCCAGCAGAAGG
AGGTAGCTAGTAAATAG back to top
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