EWM25332.1, cds5334 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|585107091|gb|EWM25332.1| (TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 518.079 bits (1333), Expect = 0.000e+0 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0 Query: 1 MKTTDLLAAIQLYVDILADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKKGR 253 MKTTDLLAAIQLYVDILADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKKGR Sbjct: 1 MKTTDLLAAIQLYVDILADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKKGR 253
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|553182739|ref|XP_005853778.1| (hypothetical protein NGA_0438500 [Nannochloropsis gaditana CCMP526] >gi|422295289|gb|EKU22588.1| hypothetical protein NGA_0438500 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0 Identity = 250/253 (98.81%), Postives = 252/253 (99.60%), Query Frame = 0 Query: 1 MKTTDLLAAIQLYVDILADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKKGR 253 MKTTDLLAAIQ YVDILADRWPGL+LSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPC+IGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKKGR Sbjct: 1 MKTTDLLAAIQPYVDILADRWPGLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKKGR 253
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|553187328|ref|XP_005854585.1| (hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526] >gi|422294466|gb|EKU21766.1| hypothetical protein NGA_0175400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 507.294 bits (1305), Expect = 0.000e+0 Identity = 247/251 (98.41%), Postives = 250/251 (99.60%), Query Frame = 0 Query: 1 MKTTDLLAAIQLYVDILADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKK 251 MKTTDLLAAIQ YVDILADRWPGL+LSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPC+IGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKK+ Sbjct: 1 MKTTDLLAAIQPYVDILADRWPGLILSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCKIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKR 251
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|553183464|ref|XP_005853901.1| (hypothetical protein NGA_0463400 [Nannochloropsis gaditana CCMP526] >gi|422295156|gb|EKU22455.1| hypothetical protein NGA_0463400 [Nannochloropsis gaditana CCMP526] >gi|585102711|gb|EWM22253.1| TRAM, LAG1 and CLN8 lipid-sensing domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 159.073 bits (401), Expect = 6.079e-44 Identity = 84/232 (36.21%), Postives = 134/232 (57.76%), Query Frame = 0 Query: 23 GLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSE-GKDKGGEKKKGR 253 G+ +S WS++FG+V VLP G +F ++ R V+I HAF + L L + P EIGG NT Q IV+NV+ G+F+YD ++ + +D M FHH + L G + RSGA++ LF+ E++NPFM+ +L RE+G+ D +A N+A+FA+ TL + P L L+ P++H + +A A+G++ V+ +WF K ++K + ++ G K G K R Sbjct: 28 GVCVSATIWSLLFGIVQVLPIFKGRTFGYKTRVVAIFHAFTTMTLAYRLSFMCRPLEIGGINTPGQDIVVNVAGGFFLYDLISWIIYGYVIAKYDWMQLFHHASCLVGSWACWSSGRSGADVTFALFVAELANPFMYLRYLLREVGWKDTTLARTNQAIFALAMTLTIPILAPILACVILMEPKSHPLHQAAAVGLVVVNMMWFFKF---MTKYWAAAQTGPLKTGRKASPR 256
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|1026765301|gb|OAE26028.1| (hypothetical protein AXG93_4601s1270 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 151.369 bits (381), Expect = 1.150e-41 Identity = 94/229 (41.05%), Postives = 129/229 (56.33%), Query Frame = 0 Query: 17 LADRWPGLVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVL-LETPCE-IGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINE----------RSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAML 233 +AD W GL + TVAW FG+V L S +F NR VS++H F++AYL + V P + IGGP++ Q+ + S YF+YD+ C + R D N HH+ ++ GL G + + + G EL CL+LME+SNPFMH LF+E G D P+ AN F +IFTLAR+ GP++ Y+TL S T V+K GA+GI VS WF KI M+ Sbjct: 1 MAD-WQGLAVGTVAWGAGFGIVTALLG-KKKSGEFCNRCVSMVHVFVAAYLCMASVSDWSRPLDGIGGPSSALQMRAIKTSLAYFVYDFFCCLVVFPR----DIGNAVHHIITIMGLGYGFMTQTCPNEAKDVMQCGTELVACLWLMELSNPFMHARELFKEFGIKDTPLNMANDLSFVVIFTLARMGVGPYVVYHTLNSQSTP-VVKFGAVGIQVVSVFWFYKIARMV 222
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|255071719|ref|XP_002499534.1| (predicted protein [Micromonas commoda] >gi|226514796|gb|ACO60792.1| predicted protein [Micromonas commoda]) HSP 1 Score: 151.754 bits (382), Expect = 1.385e-41 Identity = 89/226 (39.38%), Postives = 126/226 (55.75%), Query Frame = 0 Query: 28 TVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVLLETPCE-----IGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAML----SKAFGGSEGKD 244 TV W ++F +VC S DF NR VSI+HA ++ Y + V E + IGG NT Q + + +S YF YD + C L D M+ HH+ ++ GL +G++N RSGAEL CLFLMEVSNP +H +F E+G + +A N +FA++F + R+V GP L + TL SP +++KAG GILAVS W I+ ++ K GG + K Sbjct: 26 TVFWGLMF-VVCRFALFKKYSADFSNRVVSIVHAVVAIYYSYVT--FENGWDGMFDNIGGANTEAQTLCMAISLSYFTYDLIYCALGG------DFMSVVHHMFTMGGLASGVLNGRSGAELVACLFLMEVSNPSLHLRTVFIEMGLKTSMLASINSLVFALMFLVCRLVIGPPLVWKTLASPDNDYIVKAGGFGILAVSVFWGMSIIRIIVKEVKKLMGGGKAKQ 242
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|308805829|ref|XP_003080226.1| (unnamed protein product [Ostreococcus tauri] >gi|116058686|emb|CAL54393.1| TRAM/LAG1/CLN8 homology domain [Ostreococcus tauri] >gi|1199292410|gb|OUS47498.1| TLC domain-domain-containing protein [Ostreococcus tauri]) HSP 1 Score: 149.058 bits (375), Expect = 1.756e-40 Identity = 89/229 (38.86%), Postives = 131/229 (57.21%), Query Frame = 0 Query: 28 TVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLS-AYLTLVL----VLLETPCEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGGEKKK 251 T+AW+ ++ L + + + DF NR VS++HA ++ Y L LLE +GG NT + + +S GYF+YD + C LN+ + N HH+ ++ GL +G++ RSG EL CLFLMEVSNP +H L REL D+ +A N +FA++F R+V GP L Y T+V+ +++KAGALGIL VS +W KI+ M+ + + K GG K K Sbjct: 33 TLAWTALYVLFRFV-LLRKRTADFNNRLVSLIHALVAMKYCVACLPTWGALLE---NVGGKNTSAHLDCITMSLGYFVYDLIYCVLNN------EIENVIHHMFTVGGLASGVVTGRSGPELVGCLFLMEVSNPSLHLRSLLRELDMKDSVLASVNDLIFALLFLFCRLVVGPPLVYKTVVNKDNTYLVKAGALGILIVSLMWAWKIIMMIVR----TSKKLAGGSKPK 247
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|1021527767|ref|XP_016207416.1| (transmembrane protein 136 [Arachis ipaensis]) HSP 1 Score: 144.436 bits (363), Expect = 8.057e-39 Identity = 87/226 (38.50%), Postives = 124/226 (54.87%), Query Frame = 0 Query: 24 LVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVL-LETP-CEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGG 247 +V+ V+WS F + + SFDF NR +S +HA L+ L + V + P C + ++ Q+ VL VS Y IYD V C + + D N HHL S+ GL GL ++ G+E+ C+++ E+S+PF+H L +ELGY D P+ A LFA IFT AR+V GP+LTY TL S ++IKA ALG+ VS WF KI+ M+ + G Sbjct: 9 IVVGVVSWSSAF--LVTRRILQKRSFDFSNRVISTIHAILAVTLASISVQDWKCPICPVASNSSLTQMQVLAVSVSYLIYDLVCCLFGE--RVSMD--NTIHHLVSILGLGAGLCYQKCGSEMVACVWITEMSSPFLHLRELLKELGYRDTPLNLAADLLFAAIFTFARMVAGPYLTYVTL-SANNPFLIKATALGLQLVSAFWFFKILRMVKYKLTKKKSTSING 227
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|1012186732|ref|XP_015969640.1| (transmembrane protein 136 isoform X2 [Arachis duranensis]) HSP 1 Score: 142.895 bits (359), Expect = 3.034e-38 Identity = 86/226 (38.05%), Postives = 123/226 (54.42%), Query Frame = 0 Query: 24 LVLSTVAWSVVFGLVCVLPAISGTSFDFRNRTVSILHAFLSAYLTLVLVL-LETP-CEIGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGG 247 +V+ V+WS F + + SFDF NR +S +HA L+ L + V + P C + ++ Q+ VL VS Y IYD V C + + D N HHL S+ GL GL ++ G+E+ C+++ E+S+PF+H L +ELGY D P+ A LFA IFT AR+V GP+LTY TL S ++IKA A G+ VS WF KI+ M+ + G Sbjct: 9 IVVGVVSWSSAF--LVTRRILQKRSFDFSNRVISTIHAILAVTLASISVQDWKCPICPVASNSSLTQMQVLAVSVSYLIYDLVCCLFGE--RVSMD--NTIHHLVSILGLGAGLCYQKCGSEMVACVWITEMSSPFLHLRELLKELGYRDTPLNLAADLLFAAIFTFARMVAGPYLTYVTL-SANNPFLIKATAFGLQLVSAFWFYKILRMVKYKLTKKKSTSING 227
BLAST of EWM25332.1 vs. NCBI_GenBank
Match: gi|168015700|ref|XP_001760388.1| (predicted protein [Physcomitrella patens] >gi|162688402|gb|EDQ74779.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 141.739 bits (356), Expect = 4.051e-38 Identity = 90/223 (40.36%), Postives = 119/223 (53.36%), Query Frame = 0 Query: 28 TVAWSVVFGLVCVL-PAISGTSFDFRNRTVSILHAFLSAYLTLVLVL-LETPCE-IGGPNTRNQIIVLNVSTGYFIYDYVACTLNDVRKRHFDTMNFFHHLASLAGLLTGLINERSGAELGMCLFLMEVSNPFMHTIHLFRELGYNDAPVAEANKALFAIIFTLARVVGGPFLTYYTLVSPRTHWVIKAGALGILAVSFLWFSKIVAMLSKAFGGSEGKDKGG 247 T AW+ V+ L VL PA S DF NR VS++H F+S Y V P + +G +T Q++ L VS YF YD + C + + F F HH+ ++ GL G + SG EL CL LMEVSNPFMH L +EL D+ + AN +FA+IFT+ARV GP + Y L+S T + +K GA+GI VS LWF KI M+ K Sbjct: 2 TAAWTFVYVLSRVLFPARSK---DFCNRIVSLIHVFVSCYFCSKSVADWSRPLDGVGAASTYPQMLALTVSLAYFTYDTLCCLV----ELPFSLDVFMHHVLTILGLGFGYERQISGTELVACLMLMEVSNPFMHARELLKELNLKDSSMNLANDVVFALIFTVARVFIGPIVVYKCLLSSTTPFAVKVGAVGIQVVSLLWFYKIARMVVYKLSKKPKTRKAA 217 The following BLAST results are available for this feature:
BLAST of EWM25332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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